Four types of possible founder mutations are responsible for 87% of Japanese patients with Xeroderma pigmentosum variant type

Four types of possible founder mutations are responsible for 87% of Japanese patients with Xeroderma pigmentosum variant type

144 Letters to the Editor LETTER TO THE EDITOR Four types of possible founder mutations are responsible for 87% of Japanese patients with Xeroderma ...

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144

Letters to the Editor

LETTER TO THE EDITOR Four types of possible founder mutations are responsible for 87% of Japanese patients with Xeroderma pigmentosum variant type KEYWORDS Xeroderma pigmentosum variant type; Hot spots; Immunoprecipitation; Minimum erythema dose

Xeroderma pigmentosum (XP) is classified into nucleotide excision repair (NER) deficient types, A through G, as well as a variant type. XP-variant (XPV, OMIN: 278750) is characterized by late onset of clinical skin symptoms such as skin cancers. XP-V cells show proficient NER but display an exaggerated delay in the recovery of the replicative DNA synthesis after UV irradiation. XP occurs at higher frequency in Japan (1:22,000) [1] than in the United States (1:250,000) [2]. Approximately 50% of all Japanese patients with XP are assigned to XP-A and 25% to XP-V [2]. The responsible gene for XP-V was cloned and its

product was identified as DNA polymerase eta (POLH, Genebank accession number NM006502), which enables cells to synthesize the correct daughter strands, despite the presence of thymidine dimers, onto the UV-damaged template DNA [3,4]. After the cloning of POLH, genetic analysis revealed many mutation sites in the POLH gene in patients with XP-V [5—7]. We previously reported that an immunoprecipitation (IP) analysis with antiPOLH antibodies is a useful method for screening patients suspected of XP-V, showing clear coincidence between the molecular defect in the POLH gene and its protein loss [7], although this method has limitation that miss mis-sense mutation which generate a stable but non-functional protein. In this study after obtaining written informed consent, additional 13 Japanese patients were diagnosed as XP-V by IP analysis and POLH mutations were identified for those patients without 83 kDa POLH protein band. We combined 13 XP-V patients in this study together with 14 XP-V patients in our previous study [7] and analyzed both mutation frequency among Japanese patients (Fig. 1) and genotype—

Fig. 1 Mutation sites and its frequency of POLH gene in Japanese XP-V patients. (a) The mutation sites and the number of patients are indicated. ‘‘Homo’’ stands for homozygous mutation and ‘‘Hetero’’ stands for heterozygous mutation. As for the possible founder mutations, the allele frequencies were indicated. (b) Genotype and its predicted POLH protein. NLS stands for nuclear localization signal.

Cell strain

Age

Genotype

Amino acid changes

IP band

UDS (%)

Age onset of skin cancers BCC

SCC

MM

45

52 45

Homozygous/Hemizygous nonsense mutation XPV6HM d 53 C725G S 242 stop XPV4KO d 55 C725G S 242 stop XPV11HM d 69 G916T E 306 stop XPV10KO 62 G916T E 306 stop XPV6KO d 55 G916T E 306 stop XPV3 TK 69 G916T E 306 stop

Absent Absent Absent Absent Absent Absent

75 72 70 ND 92 89

37 45 59 41

Homozygous nonsense mutation XPV8KO 50 G916T XPV2HM d 68 C1066T

Absent Absent

ND 87

44 57

48

47.2

53.7

E 306 stop R 356 stop

C725G, G916T, C1066T average Homozygous/Hemizygous deletion XPV12HM d 43 del1661A XPV9KO

13

del1661A

XPV14KO e

71

del1661A

XPV17KO e

61

del1661A

Homozygous deletion XPV11KO 79 del1661A XPV13KO

67

del1661A

Absent

66

Absent

92

Absent

90—100

Absent

89.35

554 frameshift stop at 584 554 frameshift stop at 584

Absent

57.2

76

Absent

83

36

del1661A average Homozygous/ Hemizygous splicing mutation 54 G490T Frameshift or XPV7HM d large deletion# XPV10HM d 67 G490T Frameshift or large deletion# XPV12KO 49 G490T Frameshift or large deletion#

a

MED (mJ/cm2)

51

100 150 WNR

44 Multiple

150



136

Freckles

7—8 6—7

c

— — ND — — — + +

48

No Skin Cancers 71 No Skin Cancers

77 67 57.0

Consanguinity b

10

43

56

Sunburn

ND — ND — — ND

54 68

554 frameshift stop at 584 554 frameshift stop at 584 554 frameshift stop at 584 554 frameshift stop at 584

Photosensitivity

Letters to the Editor

Table 1 Genotype and phenotype in Japanese patients with XP-V

ND

ND

100





100

+



100





60



>116



14

+ +

67

Absent

115

47



6

ND

Absent

105

47

ND

13

ND

Absent

65

48



4



80

145

146

Table 1 (Continued )

Cell strain

Age

Genotype

Amino acid changes

IP band

UDS (%)

Age onset of skin cancers BCC

XPV15KO

28

G490T

XPV1TK

75

G490T

Homozygous splicing mutation 82 G490T XPV1HM d XPV2KO d

69

G490T

XPV5KO d

57

G490T

XPV2 TK

28

G490T/C1066T

MED (mJ/cm2)

Sunburn

Consanguinity b

Freckles

110

27

80



Absent

89

73

WNR

ND

Frameshift or large deletion# Frameshift or large deletion# Frameshift or large deletion#

Absent

109

71

57

120

+

7

+

Absent

91

22

45

60



5

+

Absent

75

45

70

+

7

+

56

WNR

NS

35

WNR 100

ND — —

24

WNR

ND

A117P

Faint

88

S 242 stop + K589T S 242 stop + K589T Frameshift or large deletion# + E 306 stop Frameshift or large deletion# + R 356 stop

Absent Absent Absent

96 ND 108

Absent

ND

Multiple 35 24

7

c

Absent

48.25

Compound heterozygote XPV8HM d 39 C725G/A1766C XPV16KO 35 C725G/A1766C XPV1KO d 34 G490T/G916T

MM

a

Frameshift or large deletion# Frameshift or large deletion#

G490T average Homozygous missense mutation XPV3KO d 50 G349C

SCC

Photosensitivity

— —

48.2 + 15 13 13

— — — —

Letters to the Editor

BCC: Basal cell carcinoma, SCC: Squamous cell carcinoma, MM: Malignant melanoma, NS: not specified, WNR: within normal range in terms of the institution standard, IP: immunoprecipitation, ND: no data. a MED for normal Japanese are between 60 and 140 mJ/cm2. b Experience of severe sunburn in their childhood according to patient’s history. c Age onset freckles on the sun-exposed area were indicated d Mutations for these patients are reported in ref. [7]. e Siblings. # 164 frameshift stop at 192, deletion from G-134 to K-163.

Letters to the Editor phenotype relationship (Table 1). Previously, we have reported that G490T was a possible hot spot. Here, we identified del1661A is the second most frequent mutation. Eighteen (33%) out of 54 alleles (27 patients) were G490T, 12 (22%) were del1661A, 11 (20%) were G916T and 6 (11%) were C725G. These four types of mutations were responsible for 47 (87%) out of 54 mutated alleles of Japanese patients with XP-V (Fig. 1a). Among Japanese XP-A patients, founder mutation has been indicated, where one particular type of mutation was detected in high frequency (85%) [1,8]. In XP-V also we identified four types of possible founder mutations, namely G490T, del1661A, G916T and C725G. Among 27 patients, 8 patients had consanguinity. Since XPV3KO is the only patient with homozygous G349C and his parents are second cousin, G349 C might be infrequent. Because most patients did not have consanguinity and all patients except XP14KO and XP17KO are not related and their origin were diverse, it could be possible that these mutations are not founder mutations but hot spots. However considering that all these mutations were not reported in countries other than Japan so far (Fig. 1a), it is likely that these mutations arose in Japan long time ago and spread over here. Two unrelated patients, XPV16KO in this study and XPV8HM [7] in the previous study, showed the same type of compound heterozygotes, C725G and A1766C. Although we have already confirmed a missense mutation A1766C is not a single nucleotide polymorphism [7], the second case of this type of compound heterozygote reconfirmed that A1766C should be the cause of the disease. The POLH protein consists of 713 amino acids and its polymerase activity resides entirely in the first 511 sequence [9], containing highly conserved among damage bypass replication proteins (Fig. 1b). We assessed genotype—phenotype relationships, by comparing clinical features including minimal erythema dose (MED), sun-induced freckles, age onset of skin cancers and repair ability in relation to the predicted amino acids (Fig. 1). Clinical features were summarized and arranged according to the genotype (Table 1). Unscheduled DNA synthesis levels were not significantly different among different genotypes. All patients except for XPV9KO and XPV17KO developed skin cancers. Among homozygous/hemizygous mutations detected, del1661A mutations cause frameshift at codon 554, which results in termination at codon 584 outside the catalytic domain, whereas C725G, G916T and C1066T cause a termination codon inside the catalytic domain. Thus, we compared clinical features of 6 patients having homozygous/hemizygous del1661A with patients having the other homo-

147 zygous/hemizygous mutations causing premature termination in the catalytic domain (Table 1). The average age of onset of BCC, SCC, and MM in patients with homozygous del1661A was 56, 63.7 and 67 years old, respectively, which were older than 47.2, 53.7, 48 in patients with C725G, G916T or C1066T. Furthermore, XP17KO, a younger sister of XP14KO with homozygous del1661A, has no skin cancer at the age of 61. It could be possible that patients having mutations outside the catalytic domain is less susceptible to skin cancers in comparison with those having mutations inside the catalytic domain, although we have to be careful to draw a conclusion since the development of skin cancer is very much influenced by the accumulative sun exposure. Additional factors other than the POLH gene might be also related with the development of skin cancer and might cause some heterogeneity within the same genotype. Broughton et al. reported that he could not find any genotype—phenotype relationship, although there were a few cases for each genotype [5]. We need more patients to draw a definite conclusion. MED was determined for 20 patients (Table 1) by standard phototesting [10] using FL32SE-30 sunlamps. Normal MED range for Japanese in our institution fall into 60—140 mJ/cm2. MED for our patients we could examined were all within normal range, which is consistent with clinical information that few patients experienced severe sunburn and their only signs were freckles before the age of 10. All patients grew up without protection from sunlight. Taken together, slight freckles on the sunexposed area, like XP9KO, can be the only clue to diagnose XP-V in their childhood. Combination of IP analysis of POLH protein and detection of these founder mutations in the POLH gene is a very useful method for genetic diagnosis for Japanese XP-V patients, especially for young patients, whose clinical features are not fully developed.

References [1] Hirai Y, Kodama Y, Moriwaki S, Noda A, Cullings HM, MacPhee DG, et al. Heterozygous individuals bearing a founder mutation in the XPA DNA repair gene comprise nearly 1% of the Japanese population. Mutat Res 2006;601:171—8. [2] Moriwaki S, Kraemer KH. Xeroderma pigmentosum–—bridging a gap between clinic and laboratory. Photodermatol Photoimmunol Photomed 2001;17:47—54. [3] Masutani C, Kusumoto R, Yamada A, Dohmae N, Yokoi M, Yuasa M, et al. The XPV (xeroderma pigmentosum variant) gene encodes human DNApolymerase eta. Nature 1999;399: 700— 4. [4] Johnson RE, Kondratick CM, Prakash S, Prakash L. hRAD30 mutations in the variant form of Xeroderma pigmentosum. Science 1999;285:263—5.

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[5] Broughton BC, Cordnonnier A, Kleijer WJ, Jaspers NG, Fawcett H, Raams A, et al. Molecular analysis of mutations in DNA polymerase eta in xeroderma pigmentosum-variant patients. Proc Natl Acad Sci 2002;99:815—20. [6] Gratchev A, Strein P, Utikal J, Goerdt S. Molecular genetics of xeroderma pigmentosum variant. Exp Dermatol 2003;12: 529—36. [7] Tanioka M, Masaki T, Ono R, Nagano T, Otoshi-Honda E, Matsumura Y, et al. Molecular analysis of DNA polymerase eta gene in Japanese patients diagnosed as xeroderma pigmentosum variant type. J Invest Dermatol 2007;127: 1745—51. [8] Nishigori C, Moriwaki S, Takebe H, Tanaka T, Imamura S. Gene alterations and clinical characteristics of xeroderma pigmentosum group A patients in Japan. Arch Dermatol 1994;130:191—7. [9] Masutani C, Araki M, Yamada A, Kusumoto R, Nogimori T, Maekawa T, et al. Xeroderma pigmentosum variant correcting protein from Hela cells has a thymine dimmer bypass DNA polymerase activity. EMBO J 1999;18:3491—501. [10] Baron ED, Stern RS. Correlating skin type and minimal erythema dose. Arch Dermatol 1999;135:1278—9.

Taro Masaki Ryusuke Ono Division of Dermatology, Graduate School of Medicine, Kobe University, Kobe, Japan

Miki Tanioka Department of Dermatology, Graduate School of Medicine, Kyoto University, Kyoto, Japan Yoko Funasaka Tohru Nagano Division of Dermatology, Graduate School of Medicine, Kobe University, Kobe, Japan Shinichi Moriwaki Department of Dermatology, Osaka Medical College, Osaka, Japan Chikako Nishigori* Division of Dermatology, Graduate School of Medicine, Kobe University, 7-5-1 Kusunoki-cho, Chuo-ku, Kobe 650-0017, Japan *Corresponding author. Tel.: +81 78 382 6134; fax: +81 78 382 6149 E-mail address: [email protected] (C. Nishigori) 13 February 2008 doi:10.1016/j.jdermsci.2008.07.001

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