14,
Februory
AND BIOPHYSICAL RESEARCH COMMUNICATIONS Pages 934-942
BIOCHEMICAL
Vol. 118, No. 3, 1984 1984
HUMAN APOLIPOPROTEIN A-I AND C-III GENES RESIDE IN THE pll+q13 REGION OF CHROMOSOME 11
S. W. Law', G. Gray', H. 6. Brewer, Jr.1, 2 A. Y. Sakaguchi, and S. L. Naylor' 1 Molecular 2
Received
Disease National
Department
January
Branch, Institutes
National Heart, Lung, and Blood of Health, Bethesda, Maryland
of Human Genetics, Buffalo,
Roswell Park New York
Memorial
Institute
Institute
4, 1984
SUMMARY: Apolipoprotein (apol A-l is a major protein of high density lipoms (HDL). The gene for apoA-I has been localized to the pll + q13 regjon of chromosome 11 by filter hybridization analysis of mouse-human hybrid cell cDNAs containing chromosome 11 translocations utilizing a cloned human apoA-I cDNA probe. The known linkage of apoA-I and apoC-II I also permitted the simultaneous assignment of the apoC-III gene to the same region on chromosome 11. Comparison with previously established gene linkages on the mouse and human genome suggests that apoA-I + apoC-III may be linked to the esterase A4 and uroporphyrinogen synthase genes which are present on the long arm of human chromosome 11. The localization of the apoA-I + apoC-I II genes in the pll+ql3 region of chromosome 11 represents a definitive chromosomal assignment of a human apolipoprotein gene, and will now enable more detailed analysis of the geneomic organization and linkages of the apolipoprotein genes.
Plasma separated
lipoproteins, by hydrated
the density
into
VLDL , IDL,
LDL, and HDL (1).
proportions
of triglycerides,
and proteins
reviews,
'Abbreviations:
plasma
low
TBE,
are
Tris
934
composed
esters,
of varying
phospholipids,
have
been
isolated
have been for
LDL, low
lipoproteins;
borate
chylomicrons,
as cofactors
lipoproteins; density
in man, can be
designated
and several
function
$1.50 Inc. reserved.
lipoproteins
lipoproteins
pH 7.1.
0 1984 by Academic Press. qf reproduction in any form
classes
transport
apolipoproteins
density
HDL, high
lipid
cholesteryl
Apolipoproteins
Kb, kilobase;
Copyright A// rights
major
Thirteen
VLDL, very
citrate,
for
cholesterol,
proteins;
0006-291X/84
five
from human plasma see 2-51.
vehicle
These
(apolipoproteins).
and characterized (for
major
apo,
EDTA, ph 8.3;
sequenced
enzymes,
density
lipo-
apolipoproteins; SSC, standard
salin
Vol. 118, No. 3, 1984 ligands
for
exchange
interaction
proteins
particles,
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS with
for
the
specific
high
transfer
and structural
affinity
of lipid
components
cellular
constituents
of lipoprotein
receptors, between
particles
lipoprotein
(for
reviews,
see 5,6).
Plasma as apoA-I, with
HDL is of major the major
shown
complete
nucleic
studies
of premature
acid
in man have
post-translational
peptidase
(16).
(20,21),
the
biosynthesis
ceptibility
of subjects
In order of apoA-I
viously
plasma
levels
which
reported Cloned
the expression
apoA-I
with
reported
DNA polymorphism
(e.g.,
analysis of the
and characterization
organization
variants
of the in
was found
A-I
region patients
and 5% in the control
hemoglobinpathies),
useful
however,
in the its
population. evaluation
potential
the
structure
type
sus-
as well We have
probes
apoA-I
as
pre-
apoA-I
Recently,
of the with
in
and metabolism
gene in normal (15).
modulate
disease.
of human liver
apolipoprotein
the 3' -flanking
which
vascular
apoA-I gene.
apoA-I
apOA-IMilano
influencing
biosynthesis of the
specific
importance
as hybridization
of the
in 44% of the
to be extremely
The factors
of premature
proapoA-I
hypertriglyceridemia,
and HDL, thereby
of the
plasma
(17-191,
mild
In
--In vivo
by an apparent
may be of major
cDNAs have been utilized
genomic
hyperlipoproteinemia,
with
as HDL.
understanding
modulate
patients
shown
our
a systematic
of the
has been
of apoA-I
the cloning
polymorphism
of apoA-I
initiated
analysis
This
as well
and the (13-15).
cell
aPOA-ITangier
to the development
to improve
we have
factors
apoA-I
reported
from the apoA-I
associated
Human apoA-I
to proapoli-I.
secretion
including
are
and processing
the
(10).
( 221,
of plasma
determining
the
of apoA-I
associated
(7-91.
has been
to mature
as well
(lo-121
cleavage
following cleavage
Variants
levels
disease
co-translational
and apOA-I#arburg
and reduced
cardiovascular
of preproapoA-I
shown that
undergoes
HDL-cholesterol
as a preproapolipoprotein
sequence
undergoes
since
of HDL, have been inversely
to be synthesized
man, preproapoA-I
importance
apolipoprotein
the development
has been
clinical
mRNA for
subjects
and
Rees et al gene
(23).
IV and type
V
DNA polymorphism of monogenic
usefulness
for
diseases
evaluation
BIOCHEMICAL
Vol. 118, No. 3, 1984 of genetic
markers
for
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
hyperlipoproteinemia
and atherosclerosis
remains
to be
established. A detailed
knowledge
and expression structural
of apolipoprotein and functional
linkage
data,
to our
thirteen
apolipoproteins.
indirectly
localized
complement
C3 which
Advances specific
both
with genes
distance that
assigns
has not
resides
Olaisen
In this
analysis
have been
identified apoA-I
the apoC-III
have
direct
we assign
cell
study
which
of apoE to
genes
was less
chromosomal
to chromosome
to obtain
chromosomal
+q13
DNAs.
phage
genomic
clone
than
11 pll+ql3
in
a DNA of
(25,26).
3 Kb apart.
position
gene
usiny
Recently,
and the
on chromosome
assign-
the human apoA-I
to pll
hybrid
recombined
same region
MATERIALS
for
of apoA-I
a constant
gene to the
a family
methods
has been reported
and apoC-III
any of the
a linkage
provided
report,
in a single
of apoA-I
reported
Direct
19 (24).
localization
gene occupies assignment
present
absence
for
19 by establishing
of human-mouse
+ apoC-III
the
et al
the
gene complexes.
been reported
can be used as probes
apoA-I
our
as yet
location,
to establish
apolipoprotein
DNA technology
which
chromosomal
be required
on chromosome
11 and a regional
the apoC-III
population,
will
in the
Recently,
genes.
between
organization,
apoE to chromosome
hybridization
kindred
linkages
knowledge,
DNA sequences
to chromosome
genes
in recombinant
ment of specific
filter
of the genomic
The Assuming
the human
simultaneously 11.
AND METhODS
Apolipoprotein A-I cDNA Probe: The cDNA probe used in this study was obtained from clwibed earlier (10, 15). This clone contains the nucleic acid sequence which encodes for the entire mature apoA-I protein and A 866 base pair long cDNA insert 10 amino acid residues of the prepropeptide. was obtained by cleavage with Msp 1 [l ug DNA/2 units of enzyme for 1 hour at 37"Cl and purified by agarose gel electrophoresis (1.1%). 0.25 ug of purified DNA was radiolabeled to high specific activity (2.5 x 108 cpm/ug) by nick translation (27). Human-Mouse Somatic Cell Hybrids: Human-mouse somatic cell hybrids were constructed by fusing mouse LM/TK (thymidine kinase deficient) or RAG (hypoxanthine phosphoribosyl transferase deficient) fibroblasts with human fibroblasts or leukocytes. Proliferating cell hybrids were selected in hypoxanthine-aminopterin-thymidine medium (28). Cell hybrids were characterized for human chromosome content by trypsin-Giemsa banding (29). Filter' Hybridization: High molecular weight DNAs were isolated from human-mouse cell hybrids as previously reported (30), at the same passage as for karyotype analysis (31). Isolated DNAs (10 ug) were digested with 30 units of EcoRI 936
Vol. 118, No. 3, 1984
BIOCHEMICAL
AND BIOPHYSICALRESEARCH
COMMUNICATIONS
(Bethesda Research Laboratory) for 3 hrs at 37°C. The restriction fragments were separated by 0.7% agarose gel electrophoresis (0.8 cm x 11 cm x 14 cm) at 35 volts for 16 hours. DNA was transferred to nitrocellulose filter paper (Schleicher and Schull) for 16 hrs in TBE buffer. Hybridization was performed for 24 hrs at 42"C, and washed briefly at room temperature with 2 x SSC, 0.1% SDS, then for 30 mins at 50°C with 0.1 x SSC, 0.1% SDS as previously described (32,33). RESULTS As previously 12.5
Kb EcoRI
lane
1).
fragment
Under
was observed DNAs were the
the
with
techniques
same hybridization
from
1
a panel
technique. performed
1 illustrates for
the apoA-I
cDNA probe
of human DNA by Southern
blotting
simultaneously Figure
(15)
mouse DNA (Fig.
extracted
Southern
were
reported
cell
Filter
2
3
Therefore, cell
hybridization
on cells
lines
2).
at the
12.5 high
(Fig.
weight
and analyzed
and karotype
by
analyses
with
the apoA-I
5
6
the hybridization
gene
(lane
7
3, Xer-9;
6
12.5- -w
FIGURE
1. DNA from human diploid fibroblasts (lane 11, and mouse RAG cells lane 2) and human-mouse cell hybrids (lanes 3-8) were hybridized with a 3 1 PThe probe hybridizes to a single labelled apoA-I specific DNA fragment. 12.5 kb EcoRI human DNA fragment (indicated by the arrow), but not to mouse DliA. Cell hybrid DNAs in lanes 3-6 contain the human apoA-I gene, whereas in lanes 7 and 8 the apoA-I gene was absent. The cell hybrid DNAs in lanes 3-8 are respectively: XER-9, XER-11, XER-7; RtW-11; USL-15; EXR-5 CSAZ (See Table I for the human chromosome content of each of the hybrids).
937
1,
Kb fragment
molecular
hybrids
obtained
contained
4
(34)
same passage.
results
which
to a single
analysis
no similar
of 19 human-mouse
representative
hybrid
blotting
condition, 1, lane
hybridized
BIOCHEMICAL
Vol. 118, No. 3, 1984 lane
4, XER-11;
(lane
lane
7, NSL-15;
lane
The results shown in Table the
apoA-I
well
8, EXR-5
gene segregated
cell
the apoA-I
on chromosome
Hybridization
illustrating
11 is
shown
of an apolipoprotein
apoA-I
19 human-mouse
with
were
chromosome
performed
EXR and XER, which
gene to the
diagram
of the
11 analyses
hybrids,
(35,361.
and when the
gene was absent
CsAZl.
The apoA-I
gene on chromosome
A schematic
6, REW 11)
analysis
I.
translocations
lane
of the complete
characterized
localized
5, XER-7;
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
analysis
with
pll
+ q13 region
the
regional
in Figure
This
2.
gene to a specific
To localize
chromosome
of chromosome
study
of the
permitted
are
previously
the apoA-I
assignment
lines
11.
with
contain
cell
11
cUNA probe
I).
11 (Table
apoA-I gene
a direct
assignment
chromosome.
DISCUSSION The application permitted
of recombinant
the development
of major
DNA techniques new concepts Table
Segregation
of the Apolipoprotein Human-Mouse
to human genetics of gene structure
has and organi-
1
A-l Gene with Human Chromosomes Somatic Cell Hybrids
in
Chromosomes Hybrid
1 TSL-2
-
ATR-13
-
NSL-9
-
NSL-15 JSR-17s WlL-6
+W +
2
-+ ++ -+ +-+
3
4
-++ -+ +-+
5
6
++ -+ +++++
WIL-2 WIL-14
+-
-
WIL-13 REW-11
+
XTR-22
+
WIL-7
+
WILdX
+
JWR-26C JWR-22H
+
XER-7
+
XER-9
+
XER-11
+ -
EXR-SCSAz
dmignsWd fibr&ksts fibrob!Ssts
TWV3klCSIiOll
ApoA-I
-+ -+ -+
+
++ -+ ++-
-++ --+ ++ +- ++ ++ ++ ++ ++ + -+ ++ ++ -+ -++ -+ ++ ++
7
6
-++ -+ ++ -+ ++ + -+ ---+ --+ ++-++ -+ ++ ++
9 10 11 12 13 14 15 16 17 18 19 20 21 22
X
-+ -+ -+ -++ -+ --+ ---+ -+ -+ ++ -+ ++ -+ -+ -+
+
-+ -+ -+ -+ ++ +-+ --ff+++ ++ +-+ -+ -+ -+
--+ ++ ++ ++ -+ --+ -+-+* -+ -+ -+ ++ --++
-+++ +++ -----+ ---+ ++ -+ ++ ++ ++ ++
-+ ++ +++ ++ +++++ --+ ++ ++ ++ ++ -+ ++ ++ ++
-+ --+ +-+ ++ ----+ ++ -++ -+ -+ ---+ ++
+-++ ++ ++ f+-++++ +f++-+-+ ++
hybrkh snd &-mm (mm lhe’hukm pm&al c&s usml for c&l hl&ma (20). XER hyWif& *nn oOn9trucbd cqmWinii m X;ll tran-ion: 16. X, del(11) (pllql3). t (X;ll) (qll; ~11). EXA hybrids were conStnx@d conmining a dikmnt X$1 translocation: 46. X. t (X:11) (q22; q13).
938
Chromosomes 1713 5/x
+
1719 7q-
+ + + + + + +
lP-
+
11/x
x13
2/I
11/x
+
x/11,11/x
with humm from human
GM 2SSS GM 3322
Vol. 118, No. 3, 1984
BIOCHEMICAL
AND BJOPHYSICALRESEARCH
COMMUNICATIONS
SRO pl1-D q'3
apo A-I gene
+
2. The region within the human chromosome 11 to which the apoA-I gene has been localized is shown in this schematic diagram. The normal hunan chromosome 11 is shown for reference on the left. In the center (a) is the region llpll+qter involved in the 11/X translocation segregating in the XER hybrids. On the
FIGURE
right
(b) is the region
llql3+qter
gating in EXR hybrids. or absence ("-" ) of the pll +q13.
zation
in normal
field
of lipoprotein
subjects
and physiological
virtually
nothing
protein
is
genes.
linkage
restricted
study
19 mouse-human
somatic
genetically
Since
the
apoC-III
a large
structure
cloned
11 translocations gene
has been
however, of the apolipo-
(37)
have
localized
The human
and genetic
studies
as was utilized
in establishing
as probes
permitted Further localized identified 939
presence
analysis apoA-I
sequences
assignment of cell
with
of the
hybrids
to the region
in combination
now permit
chromosome.
of apoA-I
the direct
the
19 (24).
will
of a gene to a specific of the
have
on chromosome
DNA sequences
assignment
In the on the
apolipoproteins,
locus
("+"I
(SRO) is
diseases.
and organization
of complement
11.
of overlap
genetic
et al
segre-
presence
body of information
Lusis
analysis
hybrids
the
9 and 1, respectively.
the identification cell
specific
heterogeneous
C3 component
apoA-I gene to human chromosome chromosome
the
of purified
In the present
taining
is
mouse strains,
as unequivocal
in the X/11 translocation
of the plasma
to kindred
of apoE to the
as well
there function
inbred
is
The availability direct
with
to mouse chromosome
however,
been usually
involved
each chromosome is indicated gene. The smallest region
and patients
known about
Using
and apoA-II
population,
Below apoA-I
research,
chemistry
apoA-I
+
conpll+q13.
apoA-I
in a
in
BIOCHEMICAL
Vol. 118, No. 3, 1984 single
recombinant
the pll+
q13 region
Current apoA-I the
phage
information
available within
of other
genes
homologous
of human chromosome
on mouse chromosome
proximal
to this
the
homologous recently
linked
to esterase
esterase located
17 is
identified
esterase
apoA-I
and apoC-III
on the
long
on the
and the
Human
Both
located
near 11.
resolution
--in
Thus,
to the
In the mouse,
2.
on chromosome (39).
which
would
apoA-I-esterase
the
9 (371
suggest
techniques
(40)
Genes in the Mouse
INS
Ins-l
7 7 7 7 2
Mouse Chromosome
HRASI ACPL
Acp-2
Catalase Apolipoprotein
CAT APOA-I
cs-1
2
Sep-1
9
UPS
Ups
9
ESAU
ES-1 7
9
Synthetase
Symbols reference
and (39).
chromosome
assignments
for
the
human
940
and
mouse
genes
11,
should
HBB LDHA
Esterase
group
hybrids
c-Ha-rasl Acid Phosphatase
Uroporphyrinogen
that
linkage
Mouse Gene Symbol
A-l
are
17-uroporhyrinogen
Human Gene Symbol
A
of
synthase
Hbb Ldh-1 Hras
Dehydrogenase
and
of human chromosome
of Homologous
gene
synthase
of additional
region
are
centromere;
A4 and uroporphyrinogen
hybridization
Table 2 11 Genes and the Locations
have
The human homolog
9 may have a homologous
of this
on
short-arm
and catalase
respect
Examination
Insulin @Globin Lactate
with
11 (39)
the
11.
situ
on the
A4 and uroporphyrinogen
esterase
based
of human chromogenes
phosphatase-2
synthase
esterase
genes
LDHA, and c-Ha-rasl
was located
translocations
Chromosome
Several
B-globin,
on the short-arm
of human chromosome
use of high
21.
Acid
as apoA-I,
of linked
and long-arms
(Table
on mouse chromosome
informative
group
short-
of human chromosome
are
gene can also
are on mouse chromosome
A4.
gene complex
containing
a conserved
7 (38,391.
arm of chromosome
long-arm
that
17 and uroporphyrinogen
on the long-arm
synthase
on the mouse and human gene map suggests
insulin,
of genes
mouse genes
Sep-1,
to
on the
11 including
group
be localized
mouse genes
homologs
apoC-III
the
11.
may reside
location
some 11 and the
(261,
of chromosome
+ apoC-III
known
clone
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
have
been
taken
from
Vol. 118, No. 3, 1984 add additional
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
insights
apoA-I and apoC-III
into
the structural
organization
and linkages
of the
genes. ACKNOWLEDGEMENT
We would
like
preparation
to thank of this
Ms. Barbara
Ziarnik
for
her
expert
assistance
in the
manuscript. REFERENCES
1.
Havel,
R. J.,
Eder,
H. A.,
and Bragdon,
1345-l 353. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24.
J. H. (1955) J. Clin.
Invest.
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Jackson, R. L., Morrisett, J. D., and Gotto, A. M., Jr. (1976) Physiol. Rev. 56-, 259-316. Osborne, J. C., Jr. and Brewer, H. B., Jr. (1977) Adv. Prot. Chem. 3l-, 253-337. Scanu, A., and Teng, T. (1979) In: The Biochemistry of Atherosclerosis (A. M. Scanu, ed.), Marcel Dekker, Inc., New York and Basel, pp. 107-121. Brewer, H. B., Jr. (1981) Klin Wochenschr 2, 1023-1035. Brewer, H. B., Jr., Schaefer, E. J., Osborne, J. C., Jr., and Zech, L. A. (1979) Proceedings of the High Density Lipoprotein Methodology Workshop, Washington, DC, U.S. Govt. Printing Office, DHEW Publ. No. 79, pp. 29-42. Gordon, T., Castelli, W. P., Hjortland, M. C., Kannal, W. B., and Dawber, T. R. (1977) Am. J. Med. 62, 707-714. Castellf, W., Doyle, J. T., Gordon, T., Hames, C. G., Hjortland, M., Hulley, S. B., Kagan, A., and Zukel, W. J. (1977) Circulation 55, 767-772. Maciejko, J. J., Holmes, D. R., Kottke, B. A., Zinsmeister, A.-R., Dink, D. M., and Mao, S. J. T. (1983) N. Eng. J. Med. 309, 385-389. Law, S. W., Gray, G., and Brewer, h. B., Jr. (19m Bfochem. Biophys. Res. Commun. 112, 257-264. Gordon, J. I .,ms, H. F., Lentz, S. R., Edelstein, C., Scanu, A. M., and Straus, A. W. (1983) J. Biol. Chem. 258, 4037-4044. Zannis, V. I., Karathanasis, S. K., Keutiii%, h. T., Goldberger, G., and Breslow, J. L. (1983) Proc. Natl. Acad. Sci. USA 80, 2574-2578. Shoulders, C. C., Kornblihtt, A. R., Munro, B. S., anbBaralle, F. E. (1983) Nucl. Acid. Res. 11, 2827-2837. Cheung, P., and Chan, L.7l983) Nucl. Acid. Res. 11, 3703-3715. H. B., Jr. (1983) Proc. NXl. Acad. Sci. USA, Law, S. W., and Brewer, in press. E. J., Law, S., Light, J. A., and Brewer, H. B., Jr. Ghisellf, G., Schaefer, (1983) Clfn. Kes. 31, 500A. Kay, L. L., Ronan,-R., Schaefer, E. J., and Brewer, H. B., Jr. (1982) Proc. Natl. Acad. Sci. USA 79, 2485-2489. Schaefer, E. J ., Kay,-C. L., Zech, L. A., and Brewer, h. B., Jr. (1982) J. Clin. Invest. 70, 934-945. Brewer, H. B., Jr: Fairwell, T., Kay, L., Meng, M., Ronan, R., Law, S. W., and Light, J. A. (1983) Biochem. Biophys. Res. Commun. 113, 626-632. Weisgraber, K. H., Bersot, T. P., Mahley, R. H., Francemini, G., and Sfrtori, C. R. (1980) J. Clin. Invest. 66, 901-907. Franceschini, G., Sfrtori, C. R., Capurz, A., Weisgraber, K. H., and Mahley, R. W. (1980) J. Clin. Invest. 66, 892-900. Utermann, G., Feussner, G., FranceschiiiT, G., Haas, J., and Steinmetz, A. (1982) J. Biol. Chem. 257, 501-507. Rees, A., Shoulders, CT., Stocks, J ., Galton, D. J ., and Baralle, F.E. (19831 Lancet 1, 444-446. Olaison, O., Eisberg, P., and Gedde-Dahl, T., Jr. (1982) tium. Genet. -'62 233-236. 941
Vol. 118, No. 3, 1984 25. 26. 27. 28. 29. 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40.
BIOCHEMICAL
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
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