Production and characterization of a novel alkaline protease from a newly isolated Neurospora crassa through solid-state fermentation

Production and characterization of a novel alkaline protease from a newly isolated Neurospora crassa through solid-state fermentation

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Journal Pre-proof Production and characterization of a novel alkaline protease from a newly isolated Neurospora crassa through solid-state fermentation Liufeng Zheng, Xinying Yu, Changhao Wei, Leyun Qiu, Chenwei Yu, Qian Xing, Yawei Fan, Zeyuan Deng PII:

S0023-6438(19)31332-5

DOI:

https://doi.org/10.1016/j.lwt.2019.108990

Reference:

YFSTL 108990

To appear in:

LWT - Food Science and Technology

Received Date: 2 September 2019 Revised Date:

22 December 2019

Accepted Date: 24 December 2019

Please cite this article as: Zheng, L., Yu, X., Wei, C., Qiu, L., Yu, C., Xing, Q., Fan, Y., Deng, Z., Production and characterization of a novel alkaline protease from a newly isolated Neurospora crassa through solid-state fermentation, LWT - Food Science and Technology (2020), doi: https:// doi.org/10.1016/j.lwt.2019.108990. This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. © 2019 Published by Elsevier Ltd.

Author Contributions Liufeng Zheng and Zeyuan Deng designed the experiments, interpreted the results, and wrote the manuscript. Xinying Yu, Changhao Wei, Chenwei Yu, and Leyun Qiu conducted the experiments and prepared the manuscript. Qian Xing and Yawei Fan revised the manuscript.

1

Production and characterization of a novel alkaline protease from a

2

newly isolated Neurospora crassa through solid-state fermentation

3 4

Liufeng Zhenga,†, Xinying Yua,†, Changhao Weia, Leyun Qiua, Chenwei Yua, Qian

5

Xinga, Yawei Fana, Zeyuan Denga,b,*

6

a

7

Nanchang 330047, Jiangxi, China

8

b

9

China

State Key Laboratory of Food Science and Technology, Nanchang University,

Institute for Advanced Study, University of Nanchang, Nanchang 330031, Jiangxi,

10 11

*

Correspondence to: Zeyuan Deng. E-mail address: [email protected]



L. Zheng and X. Yu contributed equally to this work.

12 13 14

1

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ABSTRACT

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Microbial proteases are widely used to prepare protein hydrolysates with

17

health-promoting biopeptides. Here, a newly isolated strain of Neurospora crassa

18

(named as CGMCC3088) was used to produce proteases through solid-state

19

fermentation of okara as the substrate. The optimal fermentation conditions are: okara,

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10 g; water, 21 mL; initial pH, 5.0; incubation temperature, 30°C; inoculation amount,

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2 mL; fermentation time, 72 h, with a corresponding protease activity of 1959.82 U/g.

22

The protease was further purified by ammonium sulphate precipitation, followed by

23

ion-exchange chromatography on DEAE-Sepharose and Sephadex G-75. The

24

molecular weight of the protease was 30 kDa, and further mass spectrometry analysis

25

clearly indicated that it was a novel protease. The protease had the optimal activity at

26

55°C and pH 9. The enzyme activity was partially inhibited by SDS and metal ions,

27

whereas little affected by organic solvents. The protease was completely inactivated

28

by phenylmethylsulfonyl fluoride, indicating its dominant serine protease activity. The

29

enzyme preferably hydrolyzed casein, and kinetic analysis showed that its Km and

30

Vmax were 2.18 mg/mL and 36.36 µg/mL/min, respectively. Therefore, Neurospora

31

crassa CGMCC3088 has the potential to produce a novel organic solvent-stable

32

alkaline protease, which may be applied to the preparation of bioactive ingredients.

33 34

Keywords: Neurospora crassa; Solid-state fermentation; Fermentation conditions;

35

Alkaline protease; Purification.

36 2

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1. Introduction

38

Proteases are a large category of enzymes and account for approximately 60% of

39

total global enzyme production (Li, Scott, Hemar, Zhang, & Otter, 2018). It has been

40

well documented that proteases can efficiently hydrolyze proteins to biopeptides,

41

which have excellent antioxidant, anti-inflammatory and anti-microbial activities

42

(Cermeno et al., 2019; Sultan, Huma, Butt, Aleem, & Abbas, 2018), and may help to

43

prevent various chronic diseases such as obesity and cardiovascular diseases (Cicero,

44

Fogacci, & Colletti, 2017). Currently, proteases of microbial origin have been widely

45

applied to the production of protein hydrolysates with bioactivities owing to their low

46

cost, high stability and specificity (Chew, Toh, & Ismail, 2019; dos Santos Aguilar &

47

Sato, 2018). However, more novel microbial proteases are still needed from natural

48

resources despite of the currently available commercial proteases.

49

Microorganisms in naturally fermented foods are an attractive source of proteases

50

due to their non-toxic nature and functional properties (Tamang, Shin, Jung, & Chae,

51

2016). Meitauza, a traditional fermented food produced from soybean residue, serves

52

as a health functional food and is widely consumed by Chinese people because of its

53

pleasant flavor and high biopeptide contents (Vong & Liu, 2016). Notably, protease

54

activity, which increases gradually with ripening, is one of the most important factors

55

that determine the quality of Meitauza (Liu, Han, Deng, Sun, & Chen, 2018). Since no

56

protease activity can be detected in the raw material, it can be speculated that

57

microorganisms used in the production of Meitauza can yield proteases. Therefore,

58

Meitauza may be an ideal material for exploring novel microorganisms with a high 3

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yield of proteases. In our previous work, a kind of fungus, Neurospora crassa

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CGMCC3088, was firstly isolated from Meitauza. This fungus can produce cellulases

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to effectively degrade fiber, and has a strong ability to yield carotenoids with potential

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benefits and nutrition to human health (P. Liu, Li, & Deng, 2016). More recently, our

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group demonstrated that the nutritional quality and antioxidant activity of soybean

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meal can be significantly improved through fermentation using this newly isolated

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fungus (J. Li et al., 2019). Therefore, Neurospora crassa CGMCC3088 can be

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regarded as a novel functional micoorganism. However, the ability of Neurospora

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crassa CGMCC3088 to produce proteases has never been reported before.

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Solid-state fermentation (SSF) is an important way for the production of enzymes.

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Production of enzymes by SSF with agroindustrial wastes as the substrates has

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attracted great interests due to its inherent advantages including low cost, high yield

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and environmental friendliness (Leite, Silva, Salgado, & Belo, 2019; Sadh, Duhan, &

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Duhan, 2018). Okara, also known as soybean residue and the major insoluble

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byproduct from the production of soy milk and tofu, is largely under-utilized in food

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industry. As an agroindustrial waste, okara has high nutritional values with abundant

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dietary fiber, protein, lipid, vitamin, mineral, and isoflavone (B. Li et al., 2019).

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Therefore, it is a promising and safe substrate in biotransformation process. Actually,

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okara has been successfully used as an excellent substrate for SSF to improve its

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nutritional composition and antioxidant activity (Gupta, Lee, & Chen, 2018).

79

However, there has been no report on the application of SSF to produce proteases

80

using okara as the substrate. 4

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Therefore, this study aims to optimize the fermentation conditions for achieving the

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maximum production of proteases from Neurospora crassa CGMCC3088 under SSF

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of okara. Then, we performed the purification and characterization of a novel

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extracellular alkaline protease, which can serve as a potential biocatalyst in food

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processing, particularly in the preparation of biopeptide-enriched hydrolysates.

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2. Materials and methods

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2.1. Materials

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Neurospora crassa CGMCC3088 was newly isolated from Meitauza by our lab (P.

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Liu et al., 2016). The okara was obtained from a local supermarket. Chromatographic

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columns used for protease purification were purchased from Amersham Biosciences

92

(Freiburg, Germany). All chemicals were of chemical grade.

93 94

2.2. Chemical composition analysis of soybean okara and its solid-state fermentation

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The moisture, protein, fat, fiber and ash of okara were detected according to the

96

methods described by AOAC (2005). The phenol-sulfuric acid method was used for

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soluble sugar determination as we previously described (Zheng, Wei, et al., 2018).

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The preparation of inoculum and SSF of okara were carried out as previously

99

described (P. Liu et al., 2016). Briefly, dried okara (10 g) and distilled water were

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added to Erlenmeyer flasks, which were sterilized at 121°C for 20 min. Spore

101

suspension was subsequently inoculated after cooling. After fermentation, the matter

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was mixed with distilled water (1:6, w/v) by shaking on a rotary shaker. The whole 5

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contents were then centrifuged at 12000 × g for 20 min, and the supernatant was used

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as crude enzyme extract. For peptide determination, an equal volume of 10% (w/v)

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trichloroacetic acid was added, followed by mixing and a 10-min standing to

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precipitate the proteins. After centrifugation at 4000 × g for 15 min, the supernatant

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was collected and used for peptide measurement by the Biuret method with a Biuret

108

reagent kit (Nanjing Jiancheng Bioengineering Institute, China).

109 110

2.3. Optimization of fermentation conditions for protease and soluble protein

111

production

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The effects of culture conditions, including water amount, initial pH, incubation

113

temperature, fermentation time, and incubation amount of fungus, were determined by

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single factor method. Furthermore, the most effective factors were optimized by

115

Box-Behnken design of response surface methodology (J. Li et al., 2019). The

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response data obtained based on the above design on protease activity or soluble

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protein content in crude enzyme extract were fitted to the following second-order

118

polynomial equation: =

+

+

+

119

, where Y, b0, bi, bij, and bii are the predicted response, intercept term, linear

120

coefficient, interaction coefficient, and squared coefficient, respectively, and Xi and Xj

121

are coded independent variables. The response surface and contour plots of the

122

predicted responses were used to estimate the optimal value of each parameter. The

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crude enzyme extract under the optimal culture conditions was used for further 6

124

protease purification by chromatography.

125 126

2.4. Determination of soluble protein content and protease activity

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Soluble protein content was quantitatively determined by a Bio-Rad Protein Assay

128

Kit with bovine serum albumin (BSA) as the standard. Protease activity was

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determined using casein as the substrate based on the national professional standard

130

method. Briefly, the crude enzyme or purified protease was incubated with casein at

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the concentration of 2 g/100 mL for 10 min at 40°C, and the reaction was

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subsequently terminated by 0.4 mol/L of trichloroacetic acid. The supernatant

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obtained by centrifugation at 10000 × g for 5 min was incubated with sodium

134

carbonate and Folin reagent for 20 min at 40°C. The absorbance was measured at 660

135

nm. A standard curve was generated by using 0, 10, 20, 30, 40 and 50 µg/mL of

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tyrosine, and one unit of protease activity was defined as 1 µg of tyrosine equivalent

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released per mL per min.

138 139

2.5. Protease purification

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2.5.1. Ammonium sulfate precipitation

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The crude enzyme extract was fractionated in 20% saturated (NH4)2SO4 solution to

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remove hybrid proteins. The supernatant was collected by centrifugation at 10000 × g.

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Subsequently, (NH4)2SO4 at 70% saturation was used to fractionate the supernatant

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for the second time. The pellets were obtained and re-dissolved by the addition of five

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volumes of distilled water. After dialysis with distilled water, the enzyme-containing 7

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solution was lyophilized.

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2.5.2.

Diethylaminoethyl

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chromatography

(DEAE)-Sepharose

Fast

Flow

anion-exchange

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After lyophilization, DEAE-sepharose Fast Flow anion exchange column (2.16 ×

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12.6 cm) was used to further purify the protease. Briefly, the column pre-equilibrated

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with 50 mmo/L Tris-HCl buffer (pH 7.5) was stepwise eluted with 0–0.7 mol/L of

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NaCl at a flow rate of 4.0 mL/min. 8 mL of each fraction was collected and assayed

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for protease activity and protein content.

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2.5.3. Sephadex G-75 gel filtration chromatography

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After anion-exchange chromatography, the fraction with the highest protease

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activity was subjected to gel filtration on a Sephadex G-75 column (1.6 × 60 cm),

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which was equilibrated with 50 mmo/L Tris-HCl buffer (pH 8.5). 4 mL of each

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fraction was collected at a flow rate of 0.4 mL/min. The purified protein in the

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fraction with the highest protease activity was freeze-dried and stored at −80°C.

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2.6. Molecular weight and zymography determination The molecular weight was determined by sodium dodecyl sulphate-polyacrylamide

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gel electrophoresis (SDS-PAGE) (Zheng, Yu, et al., 2018). The gel was stained with

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0.1% Coomassie brilliant blue R-250 and de-stained until clear protein bands were

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achieved. The molecular weight was estimated using the standard protein marker 8

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(10–180 kDa, Bio-Rad Laboratories).

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For zymography analysis, the gel was incubated in 50 mmol/L Tris-HCl buffer (pH

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8.5) containing 0.2% Triton X-100 after SDS-PAGE. After being washed with

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Tris-HCl buffer to remove Triton X-100, the gel was incubated with 2% (w/v) casein

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for 20 min at 50°C (Haddar, Bougatef, Agrebi, Sellami-Kamoun, & Nasri, 2009). The

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protein in gel was then stained with Coomassie brilliant blue R-250.

174 175

2.7. Protease characterization

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2.7.1. Effects of temperature and pH on protease activity and stability

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The optimum temperature for protease was determined as described by the standard

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enzyme assay at different temperatures (30–70°C). The optimum pH was measured at

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various pH values ranging from 4.0 to 11.0 under the optimum temperature with the

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following

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Na2HPO4–NaH2PO4 buffer (pH 6.0–8.0) and borax-boric acid buffer (pH 9.0–11.0).

buffers:

sodium

acetate-acetic

acid

buffer

(pH

4.0–5.0),

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To assess the temperature stability, the protease was pre-incubated at different

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temperatures from 30°C to 65°C for 20–120 min. The pH stability was investigated by

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incubating the protease with different pH buffers at 25°C for 2–10 h. The remaining

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protease activity was then determined by the standard enzyme assay and expressed as

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the percentage to the activity measured before pre-incubation.

187 188 189

2.7.2. Effect of metal ions on protease activity The effects of various metal ions including Ca2+, Cu2+, Co2+, Mg2+, Zn2+, and Fe2+ 9

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at 5 and 10 mmol/L on protease activity were investigated. The protease was

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pre-incubated with individual metal ions at room temperature for 1 h, and the

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remaining protease activity was then determined by the standard enzyme assay. The

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enzyme without metal ions was taken as 100%.

194 195

2.7.3. Effect of organic solvents on protease activity

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The effects of different organic solvents at the concentrations of 1% and 10% were

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determined by adding methanol, ethanol, acetone, acetonitrile, and isopropanol to the

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reaction mixture. The remaining protease activity was then determined by the

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standard enzyme assay. The enzyme without any additives was considered as 100%.

200 201

2.7.4. Effect of surfactants on protease activity

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The stability of the protease in different surfactants (SDS, Tween-80, Span and

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Triton X-100) was also studied. The protease was pre-incubated with individual

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surfactants at the concentration of 2 mmol/L for 1 h at room temperature, and the

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remaining protease activity was then determined under the standard assay conditions.

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The enzyme without surfactants was taken as 100%.

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2.7.5. Effect of inhibitors on protease activity

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The protease was premixed with each of the following inhibitors at room

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temperature for 1 h. The effects of different inhibitors (1 mmol/L) on the enzyme

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were assayed, including phenylmethylsulfonyl fluoride (PMSF) for serine proteases, 10

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ethylenediaminetetraacetic acid (EDTA) for metalloproteases, pepstatin A for aspartic

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proteases, and iodacetamide (IAM) for cysteine proteases. The enzyme without any

214

inhibitors was considered as 100%.

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2.8. Determination of substrate specificity and kinetic parameters

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To determine the substrate specificity of pure protease, casein, BSA, gelatin, and

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hemoglobin (1%, w/v) were used as the substrates. The enzyme activity was detected

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by the standard enzyme assay. The kinetic parameters were calculated by using casein

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as the substrate at the concentrations of 0–20 mg/mL. The kinetic parameters Km and

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Vmax were estimated using Lineweaver-Burk plot (Anitha & Palanivelu, 2013).

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2.9. Mass spectrometry and protein identification The band of homogeneous protease was excised from the SDS-PAGE gel and

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digested

with

trypsin.

The

protease

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chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS)

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as described by Chen et al. (2016). MS data were obtained using Q-Exactive (Thermo

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Finnigan, San Jose, CA). MS/MS spectra were analyzed using the MASCOT search

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engine against the fungal subset of NCBI non-redundant protein sequence database

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(NCBInr) and SwissProt database. Mass tolerances in MS and MS/MS modes were 20

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ppm and 0.1 Da. For MASCOT search, matches achieving a molecular weight search

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score ≥20 were considered as significant.

233 11

was

then

identified

using

liquid

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2.10. Statistical analysis

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The values were expressed as means ± standard deviation of three independent

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replicates. Differences between the mean values were analyzed using one-way

237

ANOVA followed by Duncan test, and P < 0.05 was considered as significant.

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3. Results

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3.1. Chemical composition of okara and its peptide production by solid-state

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fermentation

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The chemical composition of soybean okara was as follows (g/100 g dry matter):

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protein, 14.94±0.30; fat, 2.18±0.29; fiber, 39.29±1.02; soluble sugar, 4.23±0.07; and

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ash, 3.53±0.04. The overall chemical composition suggested that soybean okara is a

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suitable substrate for microbial fermentation. Further SSF of okara with Neurospora

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crassa resulted in the production of peptides, as confirmed by the disappearance of

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two major proteins β-conglycinin and glycinin (Figure 1A), as well as a remarkable

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increase of peptide content in okara after 24 h, 48 h and 72 h of fermentation (P <

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0.05; Figure 1B). Interestingly, novel proteins were yielded after 48 h and 72 h of

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fermentation (Figure 1A). Taken together, it can be speculated that SSF of okara with

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Neurospora crassa can produce proteases and thus contribute to the production of

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biopeptides.

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3.2. Optimal fermentation conditions In order to isolate and purify the protease produced from SSF of okara with 12

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Neurospora crassa, we firstly optimized the fermentation conditions for protease

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production. As presented in Figure 2, almost similar curve patterns were observed for

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both protease activity and soluble protein content, which were significantly affected

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by all the designed culture conditions (P < 0.05). Based on single factor experiment,

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amount of added water, initial pH, and incubation temperature were the most

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influential factors. Thus, these three factors were further optimized using

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Box-Behnken design. By multiple regression analysis on the experimental data, the

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following second-order polynomial equation was obtained to describe the protease

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activity (Y1, U/g) and soluble protein content (Y2, mg/g): = 1960.47 + 131.93 − 40.52 = 10.00 + 0.36

− 26.18 − 167.11

− 0.061

− 0.30

+ 133.85

− 1.18

− 478.28

+ 0.41

+ 0.10

+ 72.07

− 104.55

− 1153.56 − 0.37

− 0.17

− 3.69

265

, where X1, X2, and X3 are the amount of added water, initial pH, and incubation

266

temperature, respectively.

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The response surface and contour plots generated using the above regression

268

equations are presented in Figure 3. The model predicted that the maximal protease

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production (1988.39 U/g) was achieved at the amount of added water 20.50 mL,

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initial pH 5.0, and incubation temperature 30°C. The optimal conditions for the

271

maximal soluble protein content (10.11 mg/g) were determined to be: amount of water

272

added 20.80 mL, initial pH 5.0, and incubation temperature 30°C. Thus, for the

273

convenience of experimental operation, the fermentation conditions were optimized as 13

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follows according to the single factor tests and response surface analysis: okara 10 g,

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amount of added water 21 mL, initial pH 5.0, incubation temperature 30°C,

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inoculation amount 2 mL, and fermentation time 72 h. Under these conditions, the

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protease activity and soluble protein content reached 1959.82 U/g and 9.99 mg/g,

278

respectively, which were very close to the predicted values. Thus, the model for the

279

optimization of both protease activity and soluble protein content was satisfactory and

280

practicable.

281 282

3.3. Extraction and purification of protease

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Under the above-mentioned optimal conditions, a crude enzyme solution with

284

protease activity of 195.21 U/mg protein was further purified. During the elution from

285

the DEAE-Sepharose column, five protein peaks were observed (Figure 4A). Protease

286

activity was detected in the first peak, which corresponded to fractions 2–15, with the

287

highest protease activity being detected in fraction 5. Fractions 4–6 were collected,

288

pooled and then subjected to Sephadex G-75 gel filtration chromatography. Fractions

289

14–15 exhibited strong protease activities (Figure 4B) and were pooled to constitute

290

the final sample of purified protease. The purification process is summarized in Table

291

1. The enzyme was purified 28.27-fold with a recovery rate of 31.0%, and the specific

292

activity was enhanced to 5518.37 U/mg protein.

293

With the purification steps, the bands of proteins were reduced or disappeared

294

(Figure 5A). The finally obtained enzyme showed a high purity as confirmed by the

295

presence of a single band, with a molecular weight of approximately 30 kDa (Figure 14

296

5B). Furthermore, only one clear zone was found on SDS-PAGE by zymographic

297

analysis of the purified enzyme, indicating the presence of protease.

298 299

3.4. Identification of the purified protease by LC-ESI-MS/MS analysis

300

The 30 kDa band from SDS-PAGE was subjected to LC-ESI-MS/MS analysis. The

301

acquired data were compared with those in NCBInr and SwissProt database. Five

302

identified proteins are presented in Table 2. The purified protein showed significant

303

matches with the three already characterized proteins, including carbohydrate esterase

304

family 1 protein, carbohydrate-binding module family 1 protein, and endo-1,

305

4-beta-xylanase B precursor, which do not belong to proteases. Moreover, an

306

uncharacterized protein (accession No. CAD70564.1) and acetyl xylan esterase in the

307

databases exhibited little similarities to the purified protein, indicating that it is most

308

likely a novel protease.

309 310

3.5. Effects of temperature and pH on protease activity and stability

311

The purified enzyme was the most active at the temperature of 50–60°C, with a

312

significantly higher activity at the temperature of 55°C (P < 0.05; Figure 6A). The

313

protease activity decreased nearly linearly at temperatures below 55°C and above 60°C

314

(P < 0.05). As shown in Figure 6B, the protease activity significantly increased with

315

increasing pH, reached the maximum at pH 9, and then decreased with further

316

increase of the pH to 11 (P < 0.05). Additionally, the protease activity under alkali

317

conditions (pH 8–11) was significantly higher than that under acidic and medium 15

318

conditions (pH 4–7) (P < 0.05), indicating that it is an alkaline protease.

319

Thermostability studies revealed that the enzyme was relatively stable at the

320

temperature of 30–45°C, with a slight decrease in protease activity with increasing

321

pre-incubation time (Figure 6C). Besides, the protease was stable over a broad range

322

of pH from 6 to 10; it retained >90% of its original activity after 2 h of pre-incubation,

323

and >50% of original activity even after 10 h of pre-incubation in this pH range

324

(Figure 6D). These results also confirmed that the purified enzyme belongs to the

325

alkaline protease family.

326 327

3.6. Effects of metal ions, organic solvents, surfactants and inhibitors on protease

328

activity

329

The protease activity was increased by 5 mmol/L of Ca2+, but inhibited by all other

330

metal ions, especially by 5 mmol/L of Cu2+, with the enzyme retaining only 39% of its

331

original activity (P < 0.05; Figure 7A). The organic solvents had little effect on the

332

protease activity (Figure 7B). Methanol at 1% and 10%, ethanol at 10%, and acetone

333

at 10% only marginally inhibited protease activity (1–3%; P > 0.05). Surfactants,

334

namely Tween-80, Span and Triton X-100, showed negligible effects on the protease

335

activity of the purified enzyme (P > 0.05; Figure 7C), indicating that these surfactants

336

are not required for the activation of the enzyme. However, SDS dramatically

337

inhibited the protease activity by 27% (P < 0.05). Further inhibition studies

338

demonstrated that the purified protease was not a metalloprotease, aspartic protease or

339

cysteine protease, because its activity was not suppressed by EDTA, pepstatin A and 16

340

IAM (Figure 7D). However, the typical serine protease inhibitor PMSF completely

341

inhibited the protease activity (P < 0.05), implying that the purified enzyme belongs

342

to serine protease family.

343 344

3.7. Substrate specificity and kinetic parameters

345

As shown in Figure 8A, the purified enzyme exhibited particularly high protease

346

activity towards casein and moderate activity towards gelatin and hemoglobin, but

347

very low activity towards BSA (only ∼5%; P < 0.05). The kinetic parameters were

348

then calculated using casein as the substrate, and the enzyme showed a

349

Michaelis-Menten type of kinetics (Figure 8B). The kinetic parameters including Km

350

and Vmax values were estimated to be respectively 2.18 mg/mL and 36.36 µg/mL/min

351

using linearized Lineweaver-Burk plot.

352 353

4. Discussion

354

The characteristics of high stability, low production cost, and specificity make

355

microbial proteases highly valuable candidates in food processing, particularly in the

356

preparation of protein hydrolysates with biopeptides (Chew et al., 2019; dos Santos

357

Aguilar & Sato, 2018). Currently, there is a high industrial demand for proteases from

358

fungal sources because of their stability, broad diversity, and substrate specificity

359

(Banerjee & Ray, 2017). Among various fungi, Neurospora crassa has an interesting

360

advantage of high yields of carotenoids and cellulases (P. Liu et al., 2016; Zhou et al.,

361

2019), and thus represents a powerful tool in functional food production. In the 17

362

present study, the newly isolated Neurospora crassa CGMCC3088 from Meitauza can

363

contribute to a high yield of proteases using soybean okara as the substrate, and

364

thereby enhance the yield of biopeptides (Figure 1). An enzyme with a very high

365

protease activity was purified by chromatography, and further characterization and

366

mass spectrometry analysis strongly indicated that the enzyme is a novel organic

367

solvent-stable alkaline serine protease, which could be used in food applications.

368

In the late 20th century, an alkaline protease was firstly produced and purified from

369

Neurospora crassa using submerged fermentation (Lindberg, Eirich, Price,

370

Wolfinbarger, & Drucker, 1981). However, the research was mainly focused on the

371

production of cellulases and carotenoids from Neurospora crassa in the following

372

years until now, and there has been no report about its application to protease

373

production. Neurospora crassa CGMCC3088 was newly isolated by our laboratory

374

from Jiangxi Meitauza, and it was shown to be a mutant strain with enhanced

375

production capacity of cellulases and carotenoids (P. Liu et al., 2016). To the best of

376

our knowledge, this is the first report of isolation and purification of a protease from

377

SSF of okara with this mutant strain. The specific activity of the purified protease was

378

significantly increased compared with that reported by Lindberg et al. (1981)

379

(5518.37 vs. 1220 U/mg), and was even higher than that of commercial microbial

380

proteases including alcalase, neutrase and flavourzyme (Bao, Zhao, Wang, & Chi,

381

2017; da Silva & de Castro, 2018). SSF and submerged fermentation are the two main

382

methods for the production of microbial proteases. Although submerged fermentation

383

is often applied for industrial protease production, SSF was found to contribute to a 18

384

higher activity of proteases (Machado de Castro, Fragoso dos Santos, Kachrimanidou,

385

Koutinas, & Freire, 2018), possibly because more carbon sources including sucrose

386

and starch are used for energy transformation during the SSF process, and then more

387

amino acids are biosynthesized for protein production (Zhao et al., 2019). Thus, SSF

388

obviously outperforms submerged fermentation in microbial protease production.

389

Indeed, owing to the high protease production, SSF with microorganisms has been

390

successfully used to efficiently hydrolyze legume proteins to small pepetides and

391

amino acids that are easy to be absorbed, and thereby improve the nutritional

392

composition of the final products (Gupta et al., 2018).

393

Further characterization of enzymatic properties showed that the purified protease

394

belongs to the alkaline protease family (Figure 6). Notably, among different types of

395

proteases, alkaline protease is the most commonly used enzyme in food industry

396

because of its high activity and stability at highly alkaline pH (Guleria, Walia,

397

Chauhan, & Shirkot, 2016; Thakur, Kumar, Sharma, Bhalla, & Kumar, 2018).

398

Commercial alkaline proteases are primarily isolated from the Bacillus species

399

(Contesini, Melo, & Sato, 2018). The fungus in our study was isolated from naturally

400

fermented food, and its safe and non-toxic nature makes it a new ideal microbial

401

strain for producing alkaline proteases. Additionally, most of proteases tend to be

402

inactivated and unstable under the treatment of organic solvents, which severely limits

403

their applications (Doukyu & Ogino, 2010; Si, Jang, Charalampopoulos, & Wee,

404

2018). Recently, various attempts have been made to screen enzymes with natural

405

organic solvent tolerance (de Borba, Machado, Brandelli, & Kalil, 2018; Thakur et al., 19

406

2018). Our purified protease from Neurospora crassa CGMCC3088 remained active

407

in the presence of various organic solvents (Figure 7B). Therefore, Neurospora crassa

408

CGMCC3088 is expected to have promising applications in the production of organic

409

solvent-tolerant proteases and functional foods with high contents of carotenoids and

410

biopeptides.

411 412

5. Conclusions

413

The extracellular alkaline protease produced from the SSF of soybean okara with

414

Neurospora crassa CGMCC3088 was demonstrated to have several superior

415

properties of high industrial values, including alkaline pH, good thermostability and

416

organic solvent tolerance. Importantly, peptide production was observed in soybean

417

okara after SSF with Neurospora crassa, indicating the great application potential of

418

this novel protease in the production of protein hydrolysates with bioactivities.

419

However, further research is needed to apply the purified protease to enzymatic

420

hydrolysis for the production of protein hydrolysates. Besides, it is also necessary to

421

explore the structure-function relationship by using three-dimensional structure

422

modeling and site-directed mutagenesis.

423 424

Acknowledgments

425

This work was supported financially by the Research Program of State Key

426

Laboratory of Food Science and Technology, Nanchang University (Grant Number:

427

SKLF-ZZA-201610). 20

428 429 430

Conflict of interests The authors declare no competing financial interests.

431 432

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Zhou, R., Ren, Z., Ye, J., Fan, Y., Liu, X., Yang, J., . . . Li, J. (2019). Fermented soybean dregs

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534

23

535

Table 1

536

Purification of protease from the solid-state fermentation of soybean okara with

537

Neurospora crassa. Purification steps

Total activity (U)

Total protein

Specific

Purification

Recovery

(mg)

activity

fold

(%)

(U/mg protein) 74452.11±639.04a

381.39±4.75a

195.21±2.91d

1.00

100.00

51370.03±381.96b

169.78±2.46b

302.56±2.32c

1.55

69.00

DEAE Sepharose

45068.80±483.19c

25.14±0.21c

1792.93±15.86b

9.18

60.53

Sephadex G-75

23081.14±102.86d

4.18±0.05d

5518.37±35.56a

28.27

31.00

Crude extract Ammonium

sulfate

precipitation

538

Means with different letters within the same column differ significantly at P < 0.05.

539

24

540

Table 2

541

Identification of the purified protease from the solid-state fermentation of soybean

542

okara with Neurospora crassa.

Accession number

Protein name

Unique peptides

KHE83333.1

Carbohydrate esterase family 1 protein (Neurospora crassa)

KHE83062.1

Carbohydrate-binding module family 1 protein (Neurospora crassa)

CAD71059.1

Endo-1, 4-beta-xylanase B precursor (Neurospora crassa) Uncharacterized protein (Neurospora crassa) Acetyl xylan esterase (Neurospora crassa)

K.QWSNVLGVEFSR.N K.YNADASR.V R.CAM*EALK.Q R.CAMEALK.Q R.GLQHTPEEWGNFVR.N R.GLQHTPEEWGNFVR.N R.M*YTYVPDK.L R.MYTYVPDK.L R.NSYPGYTGR.R R.NSYPGYTGR.R K.IFEDTWAK.K K.IPSDIPAGDYLLR.A K.IPSDIPAGDYLLR.A K.KPSSSSGDDDFWGVK.D K.KPSSSSGDDDFWGVK.D K.GWM*PGTDR.T K.NHFDAWTR.S R.LGSVTSDGGVYDIYR.T

CAD70564.1

EAA29891.1

Sequence coverage (%)

Theoretical mass (kDa)

19.52

31.08

8.47

10.91

32.86

6.89

10.58

30.78

8.47

R.QGTNAVATAVNSLNAR.C

5.33

30.41

7.83

K.LVGVYAR.G R.GVGHSVPIR.G R.GVGHSVPIR.G

5.13

33.43

6.74

543

25

pI

544

Figure captions

545

Figure 1. Protein electrophoresis profiles (A) and peptide contents (B) of soybean

546

okara before and after the solid-state fermentation with Neurospora crassa. Arrows 1,

547

2 and 3 indicate α’-, α- and β-subunits of β-conglycinin, respectively. Arrows 4 and 5

548

indicate acidic and basic subunits of glycinin, respectively. Peptide contents are

549

expressed as mg of glutathione (GSH) equivalents/g dry weight (DW), and means

550

with different letters differ significantly at P < 0.05.

551 552

Figure 2. Effects of different culture conditions on protease activity and soluble

553

protein content from the solid-state fermentation of soybean okara with Neurospora

554

crassa. Culture conditions including the amount of added water (A), initial pH (B),

555

incubation temperature (C), fermentation time (D), and inoculation amount (E).

556

Means with different letters differ significantly at P < 0.05.

557 558

Figure 3. Surface and contour plot showing the interactive effects of different culture

559

conditions on protease activity and soluble protein content from the solid-state

560

fermentation of soybean okara with Neurospora crassa. (A and D) Amount of added

561

water and initial pH. (B and E) Amount of added water and incubation temperature.

562

(C and F) Initial pH and incubation temperature.

563 564

Figure 4. Chromatographic purification profile of proteases from the solid-state

565

fermentation of soybean okara with Neurospora crassa. (A) Chromatographic 26

566

purification profile of proteases on DEAE-Sepharose fast flow anion exchange

567

column. (B) Chromatographic purification profile of proteases on Sephadex G-75 gel

568

filtration chromatography.

569 570

Figure 5. Protein electrophoresis profile of different fractions of proteases from the

571

solid-state fermentation of soybean okara with Neurospora crassa. (A) SDS-PAGE

572

profile of the purified protease obtained after DEAE-Sepharose fast flow

573

anion-exchange

574

anion-exchange chromatography; line 2, crude supernatant. (B) SDS-PAGE profile

575

(line 1) and zymography (line 2) of purified protease obtained after Sephadex G-75

576

gel filtration chromatography.

chromatography.

Line

1,

purified

protease

obtained

after

577 578

Figure 6. Effects of temperature and pH on enzyme activity (A and B) and stability

579

(C and D) of the purified protease from the solid-state fermentation of soybean okara

580

with Neurospora crassa. Means with different letters differ significantly at P < 0.05.

581 582

Figure 7. Effects of metal ions (A), organic solvents (B), surfactants (C), and

583

inhibitors (D) on the activity of purified protease from the solid-state fermentation of

584

soybean okara with Neurospora crassa. Means with different letters differ

585

significantly at P < 0.05.

586 587

Figure 8. (A) Substrate specificity of the purified protease from the solid-state 27

588

fermentation of soybean okara with Neurospora crassa. Means with different letters

589

differ significantly at P < 0.05. (B) Lineweaver-Burk plot. Enzyme kinetic parameters

590

for hydrolysis of casein by the purified protease were determined using

591

Lineweaver-Burk plot.

592 593

594 595 596

Figure 1

28

597 598

Figure 2

599

29

600 601

Figure 3

602

30

603 604

Figure 4

605

31

606 607 608

Figure 5

32

609 610

Figure 6

611

33

612 613

Figure 7

614

34

615 616

Figure 8

35

Highlights 1. Neurospora crassa CGMCC3088 can be treated as a novel functional fermentation organism. 2. Fermentation conditions were optimized for protease producing of Neurospora crassa CGMCC3088. 3. A novel organic solvent-stable alkaline protease was purified from Neurospora crassa CGMCC3088. 4. The purified protease from Neurospora crassa CGMCC3088 can hydrolyze casein, gelatin and hemoglobin.

Conflict of interest The authors have declared that no competing interests exist.