A ran-binding motif in nuclear pore proteins

A ran-binding motif in nuclear pore proteins

A Ran-binding motif in nuclear pore proteins The small CTP-binding protein is essential for the second present in other proteins, step: translocat...

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A Ran-binding motif in nuclear pore proteins The small CTP-binding

protein

is essential for the second

present in other proteins,

step: translocation through the pore7s8. This suggests a direct

including NPC proteins. These

interaction between Ran and

proteins are: (1) the Saccharomyces cerevisiae nuclear pore protein

nuclear pore proteins at some stage of nuclear protein

(2) a 5. cerevisiae protein

Nup2p (ACC X69964;

Ref. 15),

related to Nup2p (ACC Z38060),

import.

which displays the highest

A 27 kDa Ran-binding protein

expression library by probing with

homology to Nup2p within the rbpl motif, (3) a human sequence tag (ACC M79174; Ref. 16) that is

(RanBPl) specific for Ran-GTP has been identified from a mouse Ran loaded with labelled CTP13. In a

particularly closely related to the

separate study using the same technique, proteins of 28, 86, 100

sequence, (4) the Caenorhabditis

and 6 for reviews). In particular, it is

and 200-300

elegans

a key component

The 28 kDa protein is cytosolic and

Ran/TC4 has been implicated number of different nuclear functions (Refs l-4;

in a

see Refs 5

in nuclear

transport7,*. Proteins are imported into the nucleus through the nuclear pores in an active two-step process9,10 that requires soluble factors’

l. The first step is the

NLS-dependent

5. cerevisioe NupZp-related

kDa were detected14.

probably corresponds to RanBPl ; the others were found in the highsalt/Triton-soluble nuclear fraction,

By comparing

the recently identified S. cerevisiae homologue of RanBPl (ACC 233503; Ref. 18), which shares

which also includes nuclear pore proteins.

binding of the

protein encoded by the

open reading frame (ORF) F59A2.1 (ACC 234801; Ref. 17), which contains two rbpl motifs, and (5)

40% identity with the mouse

sequences in the

protein and shows 64% identity

import substrate to the cytoplasmic side of the nuclear pore complex

CenBank database, we have identified an approximately 75

(NPC). Recently, a 60 kDa

amino acid domain in mouse

within the rbpl motif. As the rbpl motif is the most highly conserved

protein - ‘importin’ -was found to be required for this step12. Ran

RanBPl (ACC L25255), referred to here as the rbpl motif, that is also

domain in RanBPl, it seems likely that it mediates its interaction with Ran. In turn one might conclude that proteins containing the rbpl

Mouse RanBPl

motif bind Ran in its CTP-bound form. The presence of Ran-binding

Yeast RanBPl horn

interest, because it suggests Nup2p

motifs in Nup2p is of particular might serve to integrate the functions of two soluble factors that are essential for nuclear protein Yeast Nup2p-rel

import in the vertebrate system: namely Ran and importin. Nup2p has been shown to interact genetically and physically19 with

Human HHCP045

Srpl p (Ref. 20), the yeast homologue of importin12. The presence of the rbpl motif in Nup2p now suggests that it also

Nematode F59A2.1

interacts with Ran. The observation that Nup2p is essential only in certain genetic backgrounds15

Yeast Nup2p

indicates that such a central function is backed up by more than FIGURE 1 Proteins that contain the rbpl motif: schematic presentation of RanBPl -related proteins found in the GenBank database (release BS+) using the TBLASTN program26 of the NCBI e-mail server. Darkly shaded boxes indicate rbpl motifs; the striped box represents the Nupl53p-like

zinc-finger domains; and the lightly

shaded boxes indicate regions of XFXFC-like repeats. Mouse RanBPl is the mouse Ran-binding protein 1 (ACC L25255); yeast RanBPl horn is the 5. cerevisiaeRanBPl homologue SCHTNl (ACC X65925); yeast NupZp-rel is the NupZp-related protein encoded by an ORF in the 5. cerevisiae DNA sequence SC561 0 (ACC 238060); human HHCP045

is a partial sequence from the human clone HHCP045

(ACC M79174); yeast Nup2p is from 5. cerevisiae (ACC X69964); nematode F59A2.1 is encoded by the C. elegans ORF F59A2.1 (ACC 234801).

cDNA

sequences coding for proteins that contain at least parts of the rbpl motif were also found in rice (ACC D22992, ACC D39320, ACC D15902) and Arabidopsis thaliana

192

(ACC 234627, ACC T22134).

one gene product. The C. elegans F59A2.1 protein not only contains two potential Ran-binding sites but also has two additional remarkable characteristics: like the nuclear pore protein Nupl53p

it has a conserved

domain that includes zinc finger motifs; and it contains 13 hydrophobic pentapeptide repeats, which resemble the XFXFC motif found in several nuclear pore proteins, such as Nupl p, NupZp, Nspl p, ~62, POMl21, rat INMACIA and also Nupl53p review). Nupl53p

(see Ref. 21 for a is a DNA-binding

TRENDS IN CELL BIOLOGY VOL. 5 MAY 1995

Mouse RanBPl

36

QEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLK--HKEKG--TIRLLMRRDKTLKICANHYIT~~LK~

112

Yeast RanBPl horn

74

VDVKTMEEDEEVLYKVRAKLFRF--DADAKEWKERGTGDCKFLKN-KKTN---KVRILMRRDKTLKICANHIIAPRYTLKP

148

Yeast NupZp

597

INLQNGEEDEVALFSQKAKLTF--NAETKSYDSRGVGEMKLLK--KKDDPS-KVRLLCRSDGMGNVLLNATVVDSFKYRP

672

Nematode

F59A2.1_N

258

~EVKTGEEGEQTMFCNRSKLYIY--ANETKEWKERGTGELKVLY--NKDKK--SWRVVMRRDQVLKVCANFPILGSMTIQQ

332

Nematode

F59A2.1_C

729

~EVKTGEEDEEVMFSARCKLYKY--YSDLKENKERGLGDIKLLK--SNDN---KYRIVMRREQVHKLCANFRIEKSMRLSP

802

203

QEVKSGEESEECIYQVNAKLYQL--SNIKEGWKERGVGIIKINK--SKDDVE-KTRIVMRSRGILKVILNIQLVKGFTVQK

278

VEVITGRRAESNVLQMQCKLFVF--DKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDK

81

Yeast Nup2p-rel

3

Human HHCP045

Consensus

vevktgEEdEe..f..raKL..f--....kewkeRG.G Y

c

lk.caN..i...m...p

..kllk--.kd----k.R.lmRrd.. rn

fY Y

lf

il

IV i v

FIGURE 2 The rbpl motif: rbpl motifs are shown aligned in single-letter code. The protein sequences were aligned by using the MACAW program. Sequence names are explained in the legend to Fig. 1. F59A2.1_N and F59A2.1_C are the N-terminal and C-terminal rbpl motifs, respectively, in the F59A2.1 protein from C. elegans. A consensus rbpl motif was calculated from the shown sequences. Amino acids that are conserved in all sequences are shown in the consensus

as capital

letters.

Lower-case

letters

in the

upper

line indicate

conservation

in more

than

50%

of the

sequences. Similar amino acids in one position are shown in the lower lines. protein

exclusively

nucleoplasmic

found

4

on the

and is therefore implicated

5 6

motifs, nucleoporin-like

7 8

9 10

BLOBEL, G. (1993)

23

SUKEGAWA,

Cuff.

1. and BLOBEL, C. (1993)

GRUNDMANN,

U., NERLICH,

LOTTSPEICH, 1. Cell Biol. 123,

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C., REIN, T.,

F. and KUEPPER, H. A.

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MOORE,

M. S. and

BLOBEL, G. (1994)

Proc. Nat/ Acad. Sci. USA 91, 10212-l

NEWMEYER,

D. D. and FORBES, D. J.

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26

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Cell 52,641-653

RICHARDSON,

M. et al. (1987)

0216

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W. D., MILLS, A. D., 5. M., LASKEY, R. A.

ADAM,

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S. F., GISH, W., MILLER, W.,

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D., PREHN, S., LASKEY, R. A.

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Cell 79,

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translocation step of nuclear

FABRE, E. and HURT, E. C. (1994)

Cell 72, 29-38

807-816 12

cytosolic protein that binds to and cooperates with Ran in the

COUTAVAS,

1. D., D’EUSTACHIO,

and RUSH, M. (1993)

factor

Medizin, Berlin,

ftir Molekulare

Robert-Rdssle-Str.

10, 13125

Acknowledgements

Germany.

We thank

P.

Nature 366,

Wellcome/CRC

constructive

Institute,

Road, Cambridge,

UK

Tennis

Court

comments

CB2 1 QR.

14

LOUNSBURY, MACARA,

whether a consensus for those proteins can also be found.

11285-l

A. L. and

/. Biol. Chem. 269,

1290

15

LOEB, D. 1. D., DAVIS, L. I. and FINK, C.

16

ADAMS,

References

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NOTE ADDED IN PROOF

supported

Similarfindings to those detailed in this

Deutsche

letter have been described Dingwall mun.).

by Colin

and colleagues (pers. comAfter

this

manuscript

finished,

further

the rbpl

motif were reported.

was

proteins containing These

Forschungsgemeinthe Cancer Research Campaign

32-38

are RBPX [BISCHOFF, F.R., KREBBER,H.,

(SP1961)

BUTLER, C. and WOLFE, K. H. (1994)

SMIRNOVA,

E.,

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long-term

(1991) Proc. Not/ Acod. SC;. USA 88,

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PONSTINCL,

H. (1995)

EM80 /. 14,

fellowship

10830-l

711-712

705-7151

and RUSH, M. C. (1993)

P.

/. Cell Viol. 120,

619-630

313-323

TRENDS IN CELL BIOLOGY

BELANGER, K. D., KENNA, and DAVIS, L. I. (1994)

VOL. 5 MAY 1995

M. A., WEI, 5.

/. Cell B/o/. 126,

accession U10248 Nat/ Acad.

DONC,

W.

and two proteins with the numbers [BEDDOW,

U19240

and

A.L. et al. Proc.

Sci. USA (in press)]

by the

schaft (SFB366),

10, 1793-l 798

REN, M., DRIVAS, C., D’EUSTACHIO,

This

work was

BISCHOFF, F. R. and PONSTINCL, H. 0834

on the

manuscript.

585-587

RCCl (Ref. 25), contains this motif. It remains to be seen

Ron

Laskey for

Dirk GiWlich

E., REN, M.,

OPPENHEIM,

protein import24, nor the Ran

3

22

F., PASCHAL, B., EVANS, E.

GERACE, L. (1990)

mediates interaction with Ran. For example, neither PP15 (Ref. 23), a

P. (1990)

21

655-664

unlikely to be the only one that

2

MELCHIOR,

and DINGWALL, 11

It is also clear that this motif is

D’EUSTACHIO,

BLOBEL, C. (1994)

M. S. and

DILWORTH,

so far, it is likely

that more of these proteins will be found to contain the rbpl motif.

COUTAVAS,

M. 5. and

MOORE,

(1988)

As only a few nuclear pore proteins have been

1

MOORE,

1649-l

interactions.

M.,

M. (1992)

Opin. Cell Biol. 6, 335-342

and CERACE, L. (1993)

distinct from nuclear protein import, such as nuclear-pore-chromatin

guanine-nucleotide-exchange

Trends Biochem. SC;.

Nature 365, 661-663

(F59A2.1) suggests that it might mediate functions of Ran that are

J. A. and NOMURA,

Mol. Cell. Biol. 12, 5640-5651

DASSO, M. (1993)

Trends Biochem. SC;. 19, 2 1 l-21 6

repeats, and Nupl53p zinc finger motifs in one C. elegans protein

YANO, R., OAKES, M., YAMACHISHI, DODD,

/. Cell Biol. 125,

18, 96-l 01

interactionsz2. The combination

characterized

20

S., DASSO, M. and J. (1994)

705-719

in

nuclear-pore-chromatin of two rbpl

KORNBLUTH, NEWPORT,

side of the NPC,

and a of the

Human

Frontier

Science

Program

Organization (to D. C.).

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