Bibliography of the current world literature This
bibliography
is drawn from the journals
listed at the end of this issue and is selected from a comprehensive
that is compiled by structural
biologists.
and 31 st May 1995
are generally added to the database about two and a half months after publication).
the bibliography
(articles
The bibliography
contains every paper annotated by reviewers;
databases and published
between the beginning of the review period and the time of going to press. The bibliography
l l
number
In addition,
these references were obtained from a variety of bibliographic
grouped into topics that relate to the reviews
The
bibliography
is based on literature entered into our database between 1 June 1994
Papers considered
0 Papers considered
in square brackets following
by the reviewers
by the reviewers
to be of special interest. to be of outstanding
interest.
a selected paper, e.g. [7], refers to its number corresponding
has been
in this issue.
in the annotated references of the
review.
Contents Carbohydrates
Biophysical
and glycoconjugates
Oligosaccharide structure and conformation
707
Neoglycolipids and glycolipids
711
Glycosylation Structural
inhibitors,
and functional
enzymology
711
and synthesis
712
studies of c:arbohydrate binding
proteins Protein
glycosylation
713
and proteoglycans
713
Miscellaneous
Carbohydrates Oligosaccharide conformation Related reviews:
structure
Three-dimensional
structures
of oligosaccharides
Microbial
recognition
glycoconjugates
and
(pp 591-598);
of target-cell
(pp 622-635H
Abe Y, Harata K. Fujiwara M. Ohbu K: Crystal Structures of Methyl 6.0-n-alkanoyl-beta-D-gl~opyran~d~. Carbohydr Res 1995. 269:43-51. Acquonl D, Cantu L. Ragg E, Sonmno 5: l* Geometrical and Confornwtional Properties of GanRliosidc GaINAc-Go,,, IV4 CalNAclV3. Ne”5A&~Neu5AcCgOse4Cer. Eur I Biochem 1994. 225:271-288. 1551. Adler P, Wood SI, Lee YC, Lee RT, &tr; Jr WA, Schwa RL: . High Affinity Binding of the fntamoeba tfistolytica Lcctin to Polyvalent N-acetylgalactusaminides. / Btof Chem 1995. 270:5164-5171. l65tl. Albert Ml, Holme T. Landberg 6, Lindbetl: 1, Mor~hurzaman M. Qadn F, Rahman MM: Structurd Studies of the Shiwlla Bovdii Tvw 5 0.ant&n Polvsaccharide. Ca&hydr kes 1594, 265:121u-127. Anderson AN, Parohs LAS, Parohr H: Structural Determination of the Capsular Antigen of Escherichia Coti 08:K2S:H9. Carbohydr Res 1994, 265:41-+7. Andersson M, Kenne L. Stenutz R, Widmalm C: Synthesis Of, and NMR and Cd Studies On, Methyl 4-0-[(R)And (S)-l-Carboryethyl]-alpha-1.Rhamnopyrano and Methyl 6-O-[(R)- And (S).1.Carboxyethyl]. alpha-D-Galactopyranoside. Carbohydr Res 1994, 254:35L41. Andre C, Luger P, Bach R. Fuhrhop ,H: On the Conforrnattonal and Packing Behaviour of Acyclic Sugar Amphiphiln: the Crystal Structures of N-(l-octyl)-D-arabinoMmidc and N-(l-dudecyl)D-ribonamide and the Supramolecular Assembly forming Properties of N-(l-octyl)-D-pentoMmi~. Cadwhydr Res 1995, 266:15-35. Andre C, Luger P, Nehmzow D, Fuhrhop )H: The X-ray Crystal Structure of the Double-headed Amphiphile
’
Crystallization
methods
X-ray structure Automated
Field gradient techniques
in NMR
in NMR
714
spectra
spectroscopy
715
Microcalorimetry
716
Laser desorption
mass spectroscopy
716
Surface plasmon
resonance techniques
717 717
Miscellaneous
and glycoconjugates
.
Biology
714
analysis
resonance assignments
(lS,2S)-1,2-bis(D-gluconamido)cyclohexane. CarbohydrRes 1994, 261:1-Il. Angstram I, Ten&w S, Karlrson KA: Delineation and l*‘ Comparison of’Cangliosidc-binding Epitopes for the Toxins of Vibrio Cholerae. fscherichia Co/i. and Clostridium Tetani: Evidence for Overlapping Epitopes. Proc Natl Acad Sri U S A 1994, 91:11859-11863. [42:1. Angyal 51. Craig DC: The Unusually Stable Crystal Structure of Newinositd. Carbohydr Res 1994, 263:149-154. Asens~o IL, Imwnez-Bartxro I: The use of the Amber Force Field in Conformational Analysis of Carbohydrate Molecules: Determination of the Solution Conformation of Methyl a-lactosidc by NMR Spectroscopy, Assisted by Molecular Mechanics and Dynamics Calculations. Blopolymers 1995. 3555-73. [451. Banac 2. Kojicprodlc B, Kroanbatenburg 1, Keglewc D: Conformational An&sir and Cornwter Modellinc of Muramic Acid D&a-l&am St&tures. Cad&ydr Res 1994, 259:159-l 74. Bardet M, Vlncendon M: High Resolution Solid State C-13 NMR Study of Crystalline Methyl Dxylopyranoside Anomeric Mixtures. Carbohydr Res 1994, 264:135-140. Barone C, Corsaro MM, Decastro C. Lanretfa R. Manxon L, Parrllli M: Structural Investigation of Ccratozamia Spinosa Mucilage. Carbohydr Res 1994. 260:259-270. Becker B. Lommerse IPM. MelLonIan M, Kamerhng JP, Vltegenthart JFC: The Structure of an Acidic Trisaccharidc Comoonent from a Cell Wall Pdysaccharide Pr&ration of the Green Alga Tetraselmir Striata Butcher. Carbohydr Res 1995, 267:313-321. Bell AF. Barron LD, Hecht L: Vibrational Raman Optical Activity Study of D-glucose. Cxbohydr Res 1994, 257:11-24. Bell AF. Hecht L, Barron LD: Disaccharide Solution Stereochemistry from Vibrational Riman Optical Activity. I Am Chem Sot 1994, 116:5155-5161. Benesi Al, Falzone CJ, Banerjee S, Farber CK: NMR Assignments fur the Aldopentoses. Carbohydr Res 1994. 258:27-33.
0 Current
714
techniques
Ltd ISSN 0959-440X
Bernab M, Jim Ner-Barbero J, Planas A: The Conformation . of the Tri- and Tetrasaccharide Produced in the Hydrolysis of Barley Clucan with the Enzyme Endo1.3.1.4~BRlucan Celucanohvdrdare frum RaciNus licheni&nis. / Ca&hydr them 1994, 13:799-817.
[6x1. Bernlmd
C, Oscarson
S, WadmaIm
G: Synthesis,
NMR,
.
and Conformational Studies of Methvl Aloha-Dmannopyranoside 2-, 3., 4.. and 6.monophosphates. Carbohyd, Res 1994, 263:173-180. Bevnon LM. Richards IC. Perrv MB: The Structure of the Lipopolysaccharide 0 A&igen from Yersinia Ruckeri Serotype 01. Carbohydr Res 1994. 256:303-317. Bezemer L. Ku11ME, Leyte IC: The Thermodynamic Characteristics of the Conformational Transitions of Native Xanthan. Carbohydr Res 1994, 263:197-207. Blzlk F, Tvaroska I, Remko M: Conformational Analy$s of Ester and Ether Linkages in Lignin-arabinoxyian Comolcxes. Carfwhvdr Res 1994. 261:91-102. Boume l
*
Y, Bolg~ano
Herrberg
0.
8, L,ao
Fear
D-l,
Strecker
T, Camballau
C, Cantau
P,
C: Crosslinking
of Mammalian
Lectin (galectin-1) by Complex Biantennary Saccharides. Nature Srrucr &o/ 1994. 1:863-870. 1741. Brown CM, Huckrrby TN, Morris HC, Abram BL, Nedusrynski IA: Oligusaccharides Derived from Bovine Arlicular Cartilage Kentan Sulfates after Keratanase II Digestion -Implications fur Kera(an Sulfate Structural Fingerprinting. Blochemrsrry 1994, 33~4fi7h-I846 Bullough l*
PA. Hughron FM. Skehel II, Wiley DC: Structure of Influenza Hemagglutinin at the pH of Membrane Fusion. Nature 1994, 371:37-l3. [2t].
Bundle l*
DR.
Zdanov
Baumann
H, Bnrson
A. Cvelet
M: Sdution
J-R, Cagn Structure
SM. of a
trisaccharide-antibody Complex: Comparison of NMR Measurements with a Crystal Structure. Emchemistry 1994, 33:5183-5192. [40]. Bundle DR. Erchler E, C,dney MAJ, Meldal M. Ragauskas A. Sigurskrold BW, Smnott B, Watson DC, Yaauchb M, Young NM: Mdrcular Recognition of a Sal&n& Trisaccharide Epttope by Monoclonal Antibody Se155-4. 6,ochemisrry 1994, 33:5172-5182.
707
708
Carbohydrates and glycoconjugates Oligosaccharide Chat WC. Hounsell EF. Barer Cl, Lawson AM: Characterization by 1%MS and H-l NMR Spectroscopy of T&a-, Hexa-, and Octa-saccharides of Porcine Intestinal Heparin. Cxbohydr Res 1995. 269:139-l 56. Chandrasekaran R, lee El. Thallambal VC. Zevenhulzen . LPTM: Molecular Architecture of P Calactoelucan From Rhizobium Melilofi. Carbohydr Res I <94, 261:279-295. IS,]. Colquhoun II, R&t MC, Thibault IF, Faolds CB, Williamson G: Structure Identification of Fendoylated Oligosaccharides from Sugar-beet Pulp by NMR Swctrwoov. Carbohvdr Res 1994. 263:243-256. Cook; RM, Hale’RS, Liaer’SC, Shah C, Weir MP: l* The Conformation of the Sialyl Lewis X Lignd Changn Upon Binding to E-selectin. Biochemstry 1994, 33:10591-10596. [53]. Cower I, Moesby L, Erukulla RK. Reddy KC, Bmman R, . Wllschut I: Sphingolipid-dependent Fusion of Semliki Forest Virus with Cholesterol-containg Liposomes Requires Both The 3-hydroxyl Crwp and the Double Bond of the Sphingolipid Backbone. I Vim/ 1995. 69:3220-3223. [17t]. Cros S, lmberty A. Bouchemal N, Herv Du Penhoat C, P . Rer S: Modelinn of Arabinofuranose and Arabinan. II. NMR and Conf&mationaI Analysis of Arabinobiose and Arabinan. Bropolyrners 1994, 341433-l 447.
WA
Da15 P: A Quantitative Approach to Describe the Overall Motion of Monosaccharides in Solution. A C-13 NMR Relaxation Study of 1,6-anhydrwbeta-Dglwopyranose in Dimethyl Sulfoxide. Carbohydr Res 1994, 263:13-24. Dallocchro F, Tomasl M, Eellmr T: Activation of the Sendai l* Virus Fusion Protein by Receptor Binding. Bmchem Emphys Res Common 1995, 208:36-41. [14t]. Dantas L, Courto~r 1. Cwrtois B, Segur” IP, Cey C. Heyraud A: NMR Spectroscopic Investigation of Olinonlucuronates PreDared bv Enzvmic Hrdrolvsis of ;(i->4)-beta-D-glu;uroMn: Carbohydr kes I b94, 265:303-310. De Beer T, Van Zuylen CWEM, Hrd K, Boelens R, Kaptem l* R. Kamerlmg IF’, Vhegenthan JFC: Rapid and Simple Appoach for the NMR Resonance Assignment of the Carbohydrate Chains of an Intact Glycoprotein. Application of Gradient-enhanced Natural Abundance tli.% HSQC and tiSQC-TOCSY to the a-subunit of Human Chorionic Gonadotropin. FEBS Lerr 1994, 34&l-6. [31]. Detrees SA, Kosch W, Way W, Paulson JC. Sabesan 5, Halcomb RL, Huani DH, lchrkawa Y, Wang CH: Ligand Recognilion by E-selectin: Synthesis, Inhibitory Activity, and Conformational Analysis of Bivalent Sialyl Lewis X Analogs. I Am Chem Srw 1995. 11766-79. Deplnto CL, Manlner M. Rlvas C: Chemical and Spectroscopic Studies of Cercidium Praecox Cum Exudate. Carbohydr Res 1994, 26D:l7-25. Dowd MK, French AD, Rally PI: Modeling of Aldopyranosyl Ring Puckering with MM3(92) Carbohydr Res 1994, 264:lm19. Edebrrnk P, lansson PE, Rahman MM, Widmalm G, Holme T, Rahman M: Structural Studies of the O-antigen Oligosaccharides from Two Strains of Moraxella Catarrhalis Serotype C. Carbohydr Res 1995, 266~237-261. Edebrmk P, lansson PE, Rahman MM, Wbdmalm G, Holme T, Rahman M, Weintraub A: Structural Studier of the 0.polvsaccharide from the Lipormlvsaccharide of Mo&~lla (Branhamella) CatarihHlis’Serotype a (strain ATCC 25238). Carbohydr Res 1994, 257:269-284. Engelsen SB, Perez S, Toupet L. Plusquellec 0: Crystal Structure and Mdecular Mechanics Analvsis of Methyl 6-0.(N-heptylcarbanoyl)-alph;-Dglucopyranoside (HECAMEC). Carbohydr Rer 1994. 264:161-171. Enale AR, Purdue N, Hyatt IA: Induced Circular Dichroism Study of the Aqu&us Solution Complexation of Cell+olieosaccharide and Related Polvsaccharides with Ar&atic Dyes. Carbohydr Res l9b4. 265:181-195. Ensley HE, Tobias B. Pretus HA, Mcnamee RE, loner EL, Browder IW, Wrllrams DL: NMR Spectral Analysis of a water-insoluble (I-73).beta-D-glucan Isolated from Saccharomyces Cerevisiae. Carbohydr Res 1994, 258:307-311. Epand RM, Nrr S, Parolini M, Flana&w TD: The Role of . the Canglioside CDla as a Receptor for Sendai Wrus. Brorhemrsrry 1995, 34:1084-1089. ]lSt]. Evans SV, Rose DR, to R, Youna NM. Bundle DR: Exploring the Mimicry of &Jysaccharide Antigens bv Anti-idiotvnic Antibodies - the Cnstallization. hi&c&r R&icement, and Refiner&t to 2.8 Angstrom Resdution of an Idiotope-anti-idiotope Fab Complex and of the Unliganded Anti-idiotope Fab. /MO/ Biol ,994, 241:691-705.
structure and conformation
Evans SV, Slgursklold BW, lennmgs HI, Bnrson I-R, ,o R, . Tse WC, Altman E, Frosch M. We~sxerber C. Krdtrm HD. e! al.: Evidence for the Extended Helical Nature of Polvsaccharide Eoitooes. The 2.8a Resolution Struct;re and Ther&d~namics of LiRand BindinR of an Antigen Binding Fragment Specific for a-(2-8c polysialic Acid. Biochemrsrry 1995, 34:6737-6744. 1601. Falk PC, Bry I., Holgersson I, Gordon II: Expression of a . Human a-1.314.fucosvltranra~ in the Pit Cell Lineage of FiB/N M&e Stanach Results in Production of LeB-containing Clycoconjugates: a Potential Transgenic Moue Model for Studying Helicobacter PyIori Infection. Proc Nat/ Acad Sci U SA 1995, 92:1515-1519. [53tl. French AD, lelfrey GA, Pfefter P, Dudley RL. Yeon Y, Nitrch E: An NMR, X-ray Crystal Structure, and Molecular Mechanics Study of Di-(3-dcoxy-dglycero-pentulose) 1,2’:2,1’ Dianhydride. Carbohydr Res 1994, 260:1-15. Fu DT. Chen L, One111RA: A Detailed Structural Characterization of Ribonuclease B Oligosaccharides bv H-l NMR Spectroscow and Mass Soectrametrv. tarbohydr Res.1994, 26i:‘173-186. Fukamrro T, Ohkawa T, lkeda Y, Torrkata T, Coto S: Binding Mode of N,N’,N”,N”‘-tetraacetylchitotetraitol to Hen Egg White Lysozyme. Carbohydr Res 1995, 267:135-142. Galema SA, Howard E, Engberts IBFN, Crrgera JR: The Effect of Stereochemistry Upon Carbohydrate Hydration. A molecular Dynamics Simulation of BelaD-galactopyrannse And (alpha,beta)-D-talopvranose. Ca&hyd; kes 1994, 265:i15-225. Camran A. Kalrenellenboaen E. Romanowska E. Dabrowskr LJ, Dab&ski I: Lipopolysaccharide Core Region of Hafnia Alvei: Structure Elucidation Using Chemical Methods, Gas Chromatography-mass Spectrometry, and NMR Spectroscopy. Carbohydr Res 1995, 266:221-228. Gatti E, Pop010 L, Vai M, Rota N, Alberghina L: O-linked Oligosaccharides in Yeast Clycosyl Phosphatidylinusitol-anchored Protein Cp115 are Clustered in a wine-rich Region not Essential for Its Function. I Brol Chem 1994, 269:19695-19700. Cesrler K, Krauss N. Sterner T, Bet& C, Sandman” C, . Saenger w: Crystal slructure of BD-cellotetrause Hemihydrate with Implications fur the Structure of Cellulose II. Science 1994, 266:1027~1029. [SS]. GIli R. Kacurakova M, Mathlouthl M, Navarini I, Paolettl S: FTIR Studies of Sodium Hyalurorwte and Its Oligomcrs in the Amorphous Solid Phase and in Aqueous Solution. Carbohydr Res 1994. 263:315-326. Glennon TM, Zheng Y-J, LeGrand SM, Shut&erg BA. . Merz KM lr: A Force Field for Monosaccharides and 0-4) Linked Polysaccharides. I Comour Chem 1994. 15:1019~1040. [tw]. Cooneratne I. Needs PW, Ryden e Selvendran RR: Structural Features of Cell Wall Pdysaccharides from the Cotyledons of Mung Bean Vigna Radiata. Carbohydr Res 1994, 265:61-77. Gouwon C, Mareau K, Heyraud A, Taravel FR, Tvaroska I: Conformational Study of Digalacturonic Acid and Sodium Digalacturonate in Solution. Carbohydr Res 1994, 261:187-202. Grimmecke HD, Kntrel YA. Kresel B, Voges M, Rretschel ET: Structure of the Acetobacter Methanolicus MB 129 Capsular Pdysaccharide, and of Oligusaccharides Resulting from Degradation by Bacteriophage Acm7. Carbohydr Res 1994, 259:45-58. Gronber~ C, N~lsso” LJ, Bock K, Ma~nusso” G: Nuclear Magnetic Resonance and Conformational Investi~tions of the Pentaraccharide of the Fors&n Antigen and Overlapping Di-, Tri-, and Tetra-saccharide Sequences. Cdrbohydr Res 1994, 257:35-54. Grue MR. Parol,r H, Parohs LAS: Structure of the Capsular Antigen of Escherichia Coli O&KS&H. Cdrbohydr Res 1994, 258:233-241. Grue MR, Parolls H, Parolts LAS: Structural Investigation of the Capsular Pdysaccharide of Escherichia Cdi OlOl:K103:HUsing Bacteriophage Degradation and NMR Spectroscopy. Carbohydr Res 1994, 262:311-322. Crreszcryk 6. Zamojski A: Benzyl 7.0.allyl-2,3-Oisopopylidene-4-O-pmethoxybenzyl-L-glycero-alpha. D-m Anno-heptopyranoside, P Versatile LD-manHepp Derivative. Carbohydr Res 1994, 262:49-57. Gyu Y, King OS, Shin YK: Insertion of a coiled-coil Peptidc l from Influenza Virus Hemagglutinin into Membranes. Science 1994, 266:274-276. [3t]. Haalaja 5, Tlkkanen K, Nilsson U, Magnusson G. l* Karlsron KA. Frnne I: Oligosaccharide-receptor Interaction of the C.&l-4Cal Binding Adhesin of Sireptococcus Sub. Combining Site Architecture and Characterization of Two Variant Adhesin Specificities. I 81ol Chem 1994. 269~27466-27472. 14811.
’
Hare 61. Rare F, Aubln Y. Prestegad IH: ‘3C NMR Studies . of Wheat Germ Aeelutinin Interactions With Nacetylglycosamine at a MaRnetically Oriented Bilavcr Surfack Bwhemistry 1994. 33:10137--10148. [34j. Harket M. Deieso t3. Lamwe IC. Perraud M. Ratter M: Application of the Si-29 NMR 20 INEPT Spin-flip I-&olved Technique to the Structural Anaiysir df Trimethvlsilvlated Clvcosides. Carbohvdr Res 1994 263:l Sj-l&l Hasegawa M. Iso&ar A, Onabe F: Molecular Mass Distribution of Chitin and Chitosan. Carb&wrfr Rrc 1994, 262:161-166. Hawley SR. Galbralh L, Wllklnson SC: Structure of a Surface Pdysaccharide from Acinetobxter Baumannii Strain 214. Carbohydr Res 1994, 258:199-206. Hareley SR, Wllkmson SG: Structure of the Putative 010 Antigen from Acinetobacter Baumannii. Carbohvdr Res 7994, 264:73-81 Herbst R, Steiner T, Piannemuller B. Saenger w: Crystal and Mdecular Structure of N-(n-octyl).6-deoxyD-gluconamide: a Novel Packing of Amphiphilic Molecules. Carbohydr Rer 1995, 269:2941. Hevraud A. Dantas L. Courto~r I, Courtois B. Helbert W. Chanzy H: Crystallographic Data on Bacterial (I->4)-beta-D-glucuronan. Carbohydr Res 1994. 258~275-279. Hofsteenge I, Muller DR. Debeer T, Lotfler A. Rrchter WI, Vlregenthan IFC: New Type of Linkage Between a carbohydrate and a Protein: C-glycosylation of a Specific Tryptophan Residue in Human RNase U-s. Biochemisrry 1994, 33:13524-13530. HolllnRswotth RI. Zhanr YA. Pr~efer LJB: Structure of the Unusual Tri&haride Lipopolysaccharide Component Produced bv a Svmbioticallv Defective Mutant of Rhirobium Legum/nosarum B&r M&e. Carbohydr Res 1994. 264:271-280. Hwovm~ M. Torrr C: Dvwwnics in Aqueous Solutions of the Pentasaccharid& Correspondbg to the Binding Site of Heoarin for Antithrombin Ill Studied hv NMR Rel&ion Meawrements. Carbohydr Res 1995, 26&l 59-175. Hullernan SHD. Vanhazendonk IM. Vandam IEG: Determination of Crystallinity in Native cellulose from Higher Plants with Diffuse Reflectance Fourier Tranrform Infrared Spectroscorrv. Cdrbohvdr Res 1994, 261:163-172. lmkrty A, P Rez S: Molecular Modelling of l* P&e&carbohydrate Interactions. Understinding the Specificities of Two Legume Lectins Towards Oligosaccharides. Glycobiology 1994, 4:35 l-366. ]791. lmpenalr B. Rickert KW: Conformational Implications of Asparagine-linked Clycorylation. Proc Ndrl Acad SC; U S A 1995. 92:97-101. lnw” PL, Pteffer PE. Doner LW, Sapers GM. Brewster ID, Nagahashr C. Hicks KB: Binding Geometry, Stoichiometry, and Thermodynamics of CyclomaltoOligosaccharide (Cycladextrin) lnchrsion Complex Formation with Chlorogenic Acid, the Major Substrate of Apple Pdyphenol Oxidase. Carbohydr Res 1994, 256:13-27. lachymek W, Petersson C, Helander A, Kenne L, Lugowrkl C. Nfedzrela T: Structural Studies of the 0.soectic Chain and a Core Hexasaccharide of Hafnia Alvei Strain 1192 Lipopolysaccharide. Carbohydr Res 1995. 269: 125-l 38. Ian” B, Sharhkov AA, Kochanowskr H, lann K: Structural Comparison of the 06 Specific Polysaccharides from E Coli OtiK2:Hl. E Coli 06zK13:Hl, and E Coli 06zK54:HlO. Carbohydr Res 1994, 263:217-225. la”” B, Shashkov AS, Hahne M, Kochanowskr H, la”” K: Structure of the 083~specific Pdysaccharide of Escherichia Coli 083:K24:H31. Cxbohydr Res 1994, 261:215-222. la”” 8. Shashkov AS. Kochanowskr H. Jann K: Structure of the 016 Polysaccharide from Escherichia Coli 016:Kl: an NMR Investigation. Carbohydr Res 1994, 264:305-3 I lansron PE, Kenne L, Kolare I: NMR Studies of Some (1 -%)-linked Disaccharide Methyl Clycosides. Carbohydr Res 1994, 257:163-l 74. lanrso” PE. Lmdberg 8. Manca MC, Nrmmrch W, Wrdmalm C: Structural Studies of the Capsular Polysaccharide from Klebsiclla Type 38: a Reinvestigation. Carbohydr Res 1994, 261:lll -I 18. lxws MC: Relationship of Chemical Shift to Clycosidic Conformation in the Solid-state C-l 3 NMR Spectra of (I->4)-linked Glucose Polymers and Oligomers: Anomeric and Related Effects. Carbohydr Res 1994, 25!+311-318. lohansson A, lansson PE, Wldmalm C: Structure of the Polysaccharide Zantlo Elaborated by Envinia Tahitica ATCC 217 11. Carbohydr Res 1994, 264:129-134. loseph CK, Wright SD, Bornmann WC. Randolph IT, Kumar ER. Brltman R. Llu I, Kolesnlck RN: Bacterial Lipopolyraccharih Has Structural Similarity to -I~
1
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LameB.
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’
Lee
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Lcms .
structure
and conformation
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Carbohydrates and glycoconjugates Structural and functional studies of carbohydrate binding proteins Thyroid Cancer Cells. Arch Otolaryngol Head Neck 5urg 1994, 120:389-394. [27]. Goss PE, Baptiste J, Fernandes B, Baker M, Dennis • JW: A Phase I Study of Swainsonine in Patients wilh Advanced Malignancies. Cancer Res 1994, 54:1450-1457. [25]. Haga K, Harata K, Nakamura A, Yamane K: Crystallization and Preliminary X-Ray Studies of Cyclodexlrin Glucanotransferase from Alkalophilic Bacillus Sp 1011.1 Mol Bio11994, 237:163-164. Hahn M, Oisen O, Politz O, Borriss R, Heinemann U: Crystal Structure and Site-direcled Mutagenesis of Bacillus Macerans Endo-l,3-1,4-heta B-glucanase. J Biol Chem 1995,270:3081-3088, Hammond C, Braakman I, Helenius A: Rote of N-linked • • Oligosaccharide Recognition, Glucose Trimming, and Calnexin in Glycopeotein Folding and Quality Control. Proc Natl Acad Sci U S A 1994, 91:913-917. 1331. Hart Pl, Pfluger HD, Monzingo AF, Hollis T, Robertus JD: The Refined Crystal Structure of an Endochitinase from Hordeum Vulgare L Seeds at 1.8 Angstrom Resolution. J Mol Biol 1995, 248:402 ~,13. Hata Y, Natori K. Katsube Y, Ooi 1-. Arai M, Okada H: Crystallization and Preliminary X-ray Diffraction Studies of an Endoglucanase from Aspergillus Aculeatus. J Mol Bio11994, 241:278-280. Kadziola A, Abe l, Svensson 8, Haser R: Crystal and Molecular Slrocture of Barley Alpha-amylase. J Mol Bio11994, 239:104-121. Kang MS, Liu P5, Bernotas, RC, Harry BS, Sunkara • PS: Castanopsermine Analogues: Their Inhibition of Glycoprotein Processing ct-glucosidases from Porcine Kidney and BI6FIO Cells. Gtycobiology 1995, 5:147-152. [21]. Kearse KP. Wdliams DS, Singer A: Persistence of Glucose • o Residues on Core Oligosaccharides Prevents Association of TCRctand TCR~Proteios with Calnexin and Results Specifically in Accelerated Degradation of Nascent TCRotProteios Within Ibe Fndoplasmic Reliculum. EMBO J 1994, 13:3678-3686. [36]. Kuhn P, Tarentino AL, Plummer TH, Vanroey P: Crystallization and Preliminary Crystallographic Analysis of Pepllde-N-4-(N-acetyl-heta-Dglucosaminyl)asparagine Amidase PNGase E, J Mol Biol 1994, 241:622~23. Kuhn P, Tarenlino AL, Plummer TH, Vanroey P: Crystal Structure of Peptide-N-4-(N-acetyl-beta-Dglocosaminyl)asparagine Amidase F AI 2.2-angstrom Resolution. Biochemistry 1994, 33:11699-11706. Lawson CL, Vanmontfort R, Slrokopytov 8, Rozeboom HJ, Kalk KH, Devries GE, Penninga O, Dijkhuizen L, Dijkstra 8W: Nucleotide Sequence and X-Ray Structure of Cyclodexlrin Glycosyltransferase from Bacillus Circulans Strain 251 in a Maltose-Dependent Crystal Form. J Mol Bio11994, 236:590 600. Lee JH, Brown RM, Kuga S, Shoda S, Kobayashi S: Assembly of Synthetic Cellulose I. Proc Natl Acad Sci U S A 1994, 91:7425-7429. Lloyd LF, Gallay O8, Akins J, Zeikus JG: Crystallization and Preliminary X-ray Diffraction Sludies of Xylose Isomerase from Tbemaoonaerobacterium Thermosulfurigenes Strain 4B. I Mof Bio11994, 240:504 506. Maenaka K, Matsushima M, Song H, Sunada E, Walanabe K, Kumagai I: Dissection of Protein-carbohydrate Interactions in Mutant Hen Egg-white Lysozyme Complexes and Their Hydrolytic Activity. J Mol Biol 1995, 247:281-293. Manzi AE, Higa HH, Diaz 5, Varki A: Jntramolecular Self-cleavage of Polysialic Acid. J Biol Chem 1994, 269:23617 23624. Mikami B, Degano M, Hehre El, Sacchettini JC: Crystal Structures of Soybean Beta-amylase Reacted with Beta-maltose and Maltah Active Site Components and Their Apparent Roles in Catalysts. Biochemistry 1994, 33:7779-7787. Mudgapalli A, Roy SK, Holmes EH, Vijay IK: Photoidentification of Mannosyltraosferases of Doiichol Cycle in the Mammary Gland - Purification and Characterization of GDPMan:Man Beta 1.>4GIcNAc Beta 1->4GIcNAc-PP-dolichol Mannosyltransferase. J Biol Chem 1994, 269:11327 11336. Norris GE, Flaus AJ, Moore CH, Baker EN: Purification and Crystallization of the Endoglycosidase PNGase F, a peptide:N-glycosidase from Flavobacterium Meningosepticum. J Mol Bio11994, 241:624 626. Penninga O, 5trokopytov B, Rozeboom HI, Lawson CL, Diikstra BW, Bergsma J, Diikh~Jizen L: Sitedirected Mutations in Tyrosine 195 of Cyclodextrin Glycnsyltransferase from Bacillus Circulans Strain 251 Affect Activity and Product Specificity. Biochemistry 1995, 34:3368-3376. Platt FM, Neises GR, Dwek RA, Butters 1D: N• butyldeoxynojirimycin is a Novel Inhibitor of
Glycolipid Biosynthesis. I Biol Chem 1994, 269:8362 8365. [43]. Platt EM, Neises GR, Kadsson GB, Dwek RA, Butters • TD: N-bulyldeoxygalactonojirimycin Inhibits Glycolipid Biosynthesis But Does not Affect Nlinked Olignsaccharide Processing. 1 Biol Chem 1994, 269:27108-27114. [44], Sanzaparicio J, Romero A, Martinezripoll M, Madarro A, Elors A, Polaina J: Crystallization and Preliminary Xray Diffraction Analysis of a Type I Beta-glucosidase Encoded by the BglA Gone of Bacillus Polymyxa. / Mol Biol 1994, 240:267-270. Strokopytov B, Penninga D, Rozeboom HJ, Kalk KH, Dijkhuizen L, Dijkstra BW: X-ray Structure of Cyclodextrin Glycnsyltrans'ferase Complexed wilb Acarbose. Implications for the Catalytic Mechanism of Glycosidases. Biochemistry 1995, 34:2234-2240. Stroud MR, Levery SB, Martensson S, Salyan MEK, Clausen H, Hakomori S: Human Tumor-associated Le(a)-Le(x) Hybrid Carbohydrate Antigen IV3(Gal Beta 1->3[Fuc Alpha 1->4]GlcNAc)-111(3)FocnLc(4) Defined by Monoclonal Antibody 43-9F: Enzymatic Synthesis, Structural Characterization, and Comparative Reactivity with Various Antibodies. Biochemistry I994, 33:10672-10680. Tan A, Van Den Broek L, Bolscher I, Vermaas OI, Past•ors • L, Van Boeckel C, Ploegh H: Introduction of Oxygen into the Alkyl Chain of N-decyl-dNM Decreases Lipophilicity and Results in Increased Retention of Glucose Residues on N-linked Oligosaccharides. Glycobiology 1994, 4:141-149. [22[. Taylor DL, Kang MS, Brennan TM, Bridges CG, 5unkara • PS, Tyms AS: Inbibilion of ct-glucosidase I of lhe Glycoprolein-processing Enzymes by 6-Obutanoyl Castanopermine (MDL 28,574) and Its Consequences in Human Immunodeficiency Virusinfected T Cells. Antimicrob Agents Chemotherap 1994, 38:1780-1787. [20]. Tomic S, Vaneijck BP, Kroon J, Kojicprodic B, Lacan G, Magnus V, Duddeck H, Hiegemann M: Synthesis and Conformational Analysis of 2-(indol-3-yl)ethyl Alpha-L-arabinopyranoside and Its 2,3,4-lri-O-acetyl Derivative. Carbohydr Res 1994, 259:175-190. Van Kemenade FI, Rotteveel ETM, Van Den Brook LAGM, • Boars PA, Van Lier RAW, Miedema F: Glucosidase Trimming Inhibitors Preferentially Perturb T Cell Activation Induced by CD2 MAb. J Leukoc Biol 1994, 56:159 165. [28]. Vanmontfort RLM, Piining T, Kalk KH, Schuurmanwohers GK, Reizer J, Saier MH, Robillard G, Dilkstra BW: Crystallization of Enzyme liB of the Cellobinsespecific Phnspholraosferase System of Eschesichia Coli. J Mol Biol 1994. 239:588-590. Vanroey P, RoD V, Plummet TH, Tarentino AL: Crystal Structure of Endo-beta-N-acetylglucosaminidase F-l, an Alpha/beta-barrel Enzyme Adapted for a Complex Substrate. Biochemistry 1994, 33:13989-13996. Vanroey P, Silva GH, RoD V, Plummer TH, Tarenlino AL, Guan C: Crystallization and Preliminary Crystallographic Analysis of Two Endo-heta-NAcetylglucosaminidases, Endo H and Endo F-1. J Mol Bio11994, 237:157-159. White A, Withers SG, Gilkes NR, Rose DR: Crystal Structure of the Catalylic Domain of the Beta-l,4glycanase Cex from Cellulomonas Fimi. Biochemistry 1994, 33:12546-12552. Yamasaki R, Kerwood DE, Schneider H, Quinn KP, Griffiss IM, Mandrell RE: The Slructure of Lipooligosaccharide Produced by Neisseria Gonorrhoeae, Strain 15253, Isolated from a Patient with Disseminaled Infection - Evidence for a new Glycosylation Pathway of the Gonococcal Lipooligosaceharide. J Biot Chem 1994, 269:30345-30351.
Structural and functional studies of
carbohydrate binding proteins Related reviews: Increasing diversity of animal lectin structures (pp 612-616); X-ray crystal structures of animal lectins (pp 61 7-621 )t Adler P, Wood SJ, Lee YC, Lee RT, Petri WA, Schnaar RL: High Affinity Binding of the Entamoeba Histolytica Lectin to Polyvalent N-acetyigalactosaminides. J Biol Chem 1995, 270:5164-5171. An•start• MJ, Huang K-S: Modulation of E-selectin • Structure/function by Metal Ions: Studies of Eimited Proteo|ysls and Metal Ion Regeneration. J Blot Chem 1995, 270:8138~144. [34]. Arai T, Parker A, Busby W, Clemmons DR: Heparin, Heparan Sulfate, and Dermatan Sulfate Regulate Formalion of the Insulin-like Growth Factor-I
and Insulin-like Growth Factor-binding Protein Complexes. I Biol Chem 1994, 269:20388-20393.
Afar C, Carpentier V, Le Caer l-P, Monsigny M, Legfand oe A, Roche A-C: ERGIC-53, a Membrane Protein of the Endoplasmic Reficulum-Golgi Intermediate Compartment, is Identical to MR60, an Intracenular Mannnse.specific Lectin of Myelomonocyfic Cells. l BIol Chem 1995, 270:3551-3553. [49]. Bajorath J, Aruffo A: Molecular Model of the Extracellular Lecfin-like Domain in CD69. / Biol Chem 1994, 269:32457 32463. Banerjee R, Mande SC, Ganesh V, Dos K, Dhanaraj V, Mahanta SK, Suguna K, Surolia A, Vijayan M: Crystal Structure of Peanut Lectin, a Protein with an Unusual Quaternary Structure. Proc Natl Acad Sci U S A 1994, 91:227 231. Barondes SH, Cooper DNW, Girt MA, terrier H: Galecfins: • Structure and Function of a Large Family of Animal Lectios. J Biol Chem 1994, 269:20807 20810. [4]. Bezouska K, Vlahas G, Horvath O, Jinochova G, Fiserova • A, Giorda R, Chambers WH, Eeizi T, Pospisil M: Rat Natural Killer Cell Antigen, NKR-P1, Related to Ctype Animal Lectins is a Carbohdrate-binding Protein. I Biol Chem 1994, 269:16945-16952. [35]. Bezouska K, Yuen C-T, O'Brien J, Childs RA, Chat W, • Lawson AM. Drbal K, Fiserova A, Pospisil M, Feizi T: Oligosaccharide Ligands for NKR-P1 Protein Activate NK Cells and Cytotoxicity. Nature 1994, 372:150-157. [361. Bourne Y, Ayouba A, Rouge P, Cambillau C: Interaction of a Legume Lectin with 2 Components of the Bacterial Cell Wall - a Crystallographic Study. / Biol Chem 1994, 269:9429-9435. Bourne Y, Bolgiano B, Lind D I, Slrecker G, Cantau P, • o Herzberg O, Feizi T. Cambillau C: Crosslinking of Mammalian Leclin (galectin-t) by Complex Bianlennary Saccharides. Nature Struct Biol 1994, 1:863-870. [12] [13+]. Brennan ], Takei F, Wong S, Mager DL: Carbohydrate • Recognition by a Natural Killer Cell Receptor, Ly-49C. l Biol Chem 1995, 270:969I 9694. 137]. Brown KL Parish CR: Histidine-rich Glycoprotein and Plalelet Factor 4 Mask Heparan Sulfate Proleoglycaos Recognized by Acidic and Basic Fibroblast Growth Factor. Biochemistry 1994, 33:13918 13927. Cerenius L, Clang ZC, Duvic B, Keyser P, Hellman U, Palva ET, Iwanaga S, Soderhall K: Structure and Biological Activity of a 1,3-heta-O-glucan-binding Protein in Crustacean Blood. J Biol Chem 1994, 269:29462 29467. Chang CYY, Sastry KN, Gillies 5D, Ezekowitz RAB, Sheriff S: Crystallization and Preliminary X-ray Analysis of a Trimeric Form of Human Mann•so Binding Protein. J MOI Blot 1994, 241:125-127. Cho M, Cummings RD: Galectin-l, a galactuside-binding • Lectin in Chinese Hamster Ovary Cells. J BiD/Chem 1995, 270:5198-5206. [26+]. Christa L, Felin M, Morali O, Simon M-T, Lasserre • C, 8rechot C, Sere A-P: The Human HIP Gene, Overexpressed in Primary Liver Cancer Cells Encodes for a C-type Carbohydrate Binding Protein with Lactose Binding Activily. FEBS Iett 1994, 337:114-118. [38]. Crocker PR, Mucklow S, 8ouckson V, McWil[iam A, • * Willis AC, Gordon S, Milon G, Kelm S, Bradtield P: Sialoadhesin, a Macrophage Sialic Acid Binding Receptor for Ha•re•pot•tic Cells with 17 Immunoglobulln-like D@qnaios. EMBO J 1994, 13:4490-4503. [39]. Davis SJ, Davies EA, Barclay AN, Daenke S, Bodian DL, Jones EY, Stuart DI, Bullets TD, Dwek RA. Vandermerwe PA: Ligand Binding by the Immunoglobulin Superfamily Recognition Molecule CO2 is Glycosylation-independenl. J Biol Chem 1995. 270:369-375. Feizi T, Solomon JC, Yuen CL long KCG, Frigeri tG, Hsu DK, tiu FT: The Adhesive Specificity of the Soluble Human Lectln, IgE-binding Protein, Toward Lipidlinked Oligosaccharldes. Presence of the Blood Group A, B, B-like, and H monnsoccharides Confers a Binding Activity to Tetrasaccharide (lacto-N-letraose and tacto-N-neotetranse) Backbones. Biochemistry 1994, 33:6342 6349. Fernandez P, Jimenezbarbero J, Mar6nlomas M, 5olis D, Diazmaurino T: Involvement of the Glucose Moiety in lhe Molecular Recognition of Methyl Beta-Lactoside by Ricin - Synthesis, Cooformational Analysis, and Binding Studies of Different Derivatives at the C-3 Region. Carbohydr Res 1994, 256:223 244 Eiedler K, Simons K: A Putative Novel Class of Animal o • Lectios in the Secretory Pathway Homologous to Leguminous Lectins. Cell 1994, 77:625 626. [50J. Gitt MA, Wiser MF, Leffler H, Herrmann J, Xia Y-R, Massa • SM, Cooper DNW, Lusis AL Barondes SH: Sequence and Mapping of Galactin-5, a ~galactoside-blnding Lectin, Found in Rat Erythrucytes. J Biol Chem 1995, 270:5032 5038. [5].
Carbohydrates and glycoconjugates Protein glycosylation and proteoglycans. Miscellaneous Gowda LR, Savilhri HS, Ran DR: The Complete Primary Structure of a Unique Mannose/glucose-specific Lectin from Field Bean (Dolichos Lab Lab). J Biol Chem 1994, 269:T8789-18793. Gupta D, 8hattacharyya L, Fant [, Macaluso f, Sabesan S, Brewer CF: Observation of Unique Cross-Linked Laltices Between Multiantennary Carbohydrates and Soybean Lectin -Presence of Pseudo-2-Fold Axes of Symmetry in Complex Type Carbohydrates. Biochemistry 1994, 33:5614-5622. Gupta D, Brewer CF: Homogeneous Aggregation ot the • 14 kDa ~galactoside Specific Vertebrate Leclin Complex with Asialofeluin in Mixed Systems. Biochem 1994, 33:552E~5530. [25f]. Hadari YR, Paz K, Dekel R, Mestovic T, Accili D, Zck Y: • Galectin 8: a New Ral Lectin, Related to Galectin-4. J Biol (.'hem 1995, 270:3447 3453. [7]. Hare BL Rise F, Aubin Y, Preste,qard JH: C-13 NMR 51udies of Wheal Germ Agglutinin Interactions wilh Nacetylglucosamine at a Magnetically Oriented Bilayer Surface. Biochemistry 1994, 33:10137-10148, Hart• WE, 8aiorath I: Synergism of Calcium and Carbohydrate Binding to Mammalian Lecfin. J Am Chem Soc ]994, 116:]0394-10398. Iobst ST, Drickamer K: Binding of Sugar Ligands Io • Ca2+-dependenl Animal Lectins. l Biol Chem 1994, 269:15512 15519. [22~-]. Iobst ST, Wormald MR, Wets Wl, Dwek RA, Drickamer K: • Binding of Sugar Ligands Io Ca2+-dependent Animal Lectins. J Biol Chem 1994, 269:15505-15511. [211"]. lshizaki ), Hanasaki K, Higashino K, Kishino ), Kiklchi N, • Ohara 0, Arita H: Molecular Cloning of Pancreatic Group I Phospholipase A 2 Receptor. J Biol Chem 1994, 269:5897-5904. [21|. Jiang W, Swiggard WJ, Heufler C, Pens M, Mirza A, • Steinman RM, Nussenzweig MC: The Receplor DEC-20S Expressed by Dendritic Cells and Thymic Epithelial Cells is Involved in Antigen Processing. Nature 1995, 375:151-155. [22]. Kelm S, Pelz A, Schauer R, Filbin MT, Tar~g S, De Bellard • • M-E, 5chnaar RL, Mahoney JA, Hartnell A, 8radheld P, Crocker PR: Sialoadhesin, Myelin-assuciated Glycoprotein and CD22 Define a New Family of Sialic Acid-dependent Adhesion Molecules of the Immunoglobulin Superfamily. Curt Biol ~994, 4:965-972. [41]. Kim D, Kim C, Park C: Engineered Tyrusine Residues Serve as the Local Probes to Detect a Kinetic Intermediate in the Folding of Ribose-binding Protein. J MO.t B,:Oi 1994, 240:385 395. Lambeau G, Ancian P, Barhanin ), tazdunski M: Cloning • and Expression of a Membrane Receptor for Secretory Phospholipases A 2. J Biol Chem 1994, 269:1575-1578. |20]. Lee RT, Yang GC, Kiang J, Bingham JB, Golgher D. Lee YC: Major Lectin of Alligator Liver is Specific for Mannose L-fucnse. J Biol Chem 1994, 269:19617-19625. Lemieox RU, Do MH, Spohr U: Relative Effects of Ionic and Neutral Substiluents on lhe Binding of an Oligosaccharide by a Protein. J Am Chem Soc 1994, 1E6:9803-9804. Loris R, SEas PPG, Wyns L: Conserved Waters in Legume Leclin Crystal Structures - the Importance of Bound Water for the Sequence-structure Relationship Within the Legume Lectin Family, J Biol Chem 1994, 269:26722 26733. Lyon M, Deakin JA, Mizuno K, Nakamura I-, Gallagher JT: Interaction of Hepatocyte Growth Factor with Heparan Sulfate - Elucidation of Ihe Major Heparan Sulfate Structural Delerminants. J Biol Chem 1994, 269:11218 11223. Madsen P, Rasmussen HH, Flint T, Gromov P, Krose TA, • Honor• B, Vorum H, Cells IE: Cloning, Expression, and Chromosome Mapping of Human Galectin-7. / Bio/Chem 1995, 270:5823 5829. [6]. McCourt PAG, Ek B, Forsberg N, Gustafson S: Intercellular • Adhesion Molecule-1 is a Cell Surface Receptor for Hyaluronan. J Biol Chem 1994, 269:30081-30084. 1421.
Mehul 8, 8awumia S, Martin SR, Hughes RC: Structure of Baby Hamster Kidney Carbohydrate-binding Protein C8P30, an S-type Animal kectin. J Biol Chem 1!194, 269:18250-18258. Moore KL, Eaton SF, Lyons DE, Lichenstein HS, Cummings RD. Mcever RP: The P,selectin Glycoprotein tigand from Human Neulrophils Display~ Sialylated, Fucosylated, O-linked Poly-N-acetytlactosamine, J Biol Chem 1994, 269:23318-23327. Mullin NP, Hall KT, Taylor ME: Characterizafion of tigand • Binding lo a Carbohydrale-recognition Domain of the Macrophage Mannose Receptor. J Biol Chem 1994, 269:28405 28413. [33]. Ornilz DM, Herr A8, Nilsson M, Westman J, Svahn CM, • • Waksman G: FGF Binding and FGF Receptor Activation by Synlhetic Heparan-derived Di- and Trisaccharides. Science 1995, 268:432~36. [ 14f1.
Overvoorde PI, Grimes HD: Topographical Analysis of the Plasma Membcaue-associaled Sucrose Binding Protein from Soybean. I Biol Chem 1994, 269:15154-15161. Powell LD, Varki A: The Olignsaccharide Binding oe Specificites of CD22a, a Sialic Acid-specific Lectin of B cells. J Biol Chem 1994, 269:10628-10636. [401. Rini JM: Lectin Struclure. Annu Rev Biophys Biomol Struct e. t995, 24:551-577. [lOt|. Sharff A], Rodselh LE, Szme}cman S, HoMung M, Quiocho FA: Refined Structures of Two Insertion/deletion Mutants Probe Function of the Mallodexlrln Binding Protein. JMol Bio11995, 246:8~T 3. Sheriif S, Chang CYY, Ezekowilz RA8: Human Mannnseeo binding Protein Carbohydrate Recognition Domain Trimerizes Through a Triple c~-helical Coiled-coil. Struct Biol 1994, 1:789 794. [11f]. Song HW, Inaka K, Maenaka K, Matsushima M: Structural Changes of Active Site Cleft and Different Saccharide Binding Modes in Human Lysozyme Co-crystallized with Hexa-N-acelyl-cbitohexanse at pH 4.0. J Mol Bio11994, 244:522-540. Varki A: Seleclin kigands. Pro(- Natl Acad Sci U S A 1994, 91:7390-7397. Viriyakosol S, Kirkland TN: A Region of Human CD14 Required for Lipopolysaccharide Binding. ] Biol Chem 1995, 270:361-368. Ware FE, Vassilakos A, Peterson PA, lackson MR, tehrman e e MA, Williams DB: The Molecular Chaperone Calnexin Binds GlclMangGIcNAc 20ligosaccharide as an Initial Slep in Recognizing Unfolded Glycoproleins. J BJol Chem 1995, 270:4697~704. [46]. Wautier IL, Waulier MP, Schmidt AM, Anderson GM, Hurl O, Zoukourian C, Capron L, Chappey O, Yan SD, Brelt L Guillausseau PI, Stern D: Advanced Glycalion End Products (AGEs) on the Surface of Diabetic ErylhrocyJtps Bind to the Vessel Wall Via a specific Beceptoe~lnducing Oxidant Slress in the Vasculature: a Link Between Surface-associated AGEs and Diabetic Complications. Proc Natl Acad Sci U S A 1994, 91:7742 7746. Wets WI, Drickamer K: Trimeric Structure of a Cee type Mannose-hiuding Protein. Structure 1994, 2:1227 1240. [12t]. YamamoIo K, Ishida C, Shinohara Y, Hasegawa Y, Konami Y, Osawa T, Irimura T: Interaction of Immobilized Recombinant Mouse C-type Macrophage Leclin with Glycopeptides and Olignsaccharldes. Biochemistry t994, 33:8159 8166. Zhang Q, T~ctor M, Sailer RD: Calnexin Recognizes e e Carbohydrate and Protein Determinants of Class I Major HislocOmpalibility Complex Molecules. J Biol Chem 1995, 270:3944 3948. [45].
Protein glycosylation and
proteoglycans Allen S, Naim HY, 8ulleid NJ: Inlracellular Folding of Tissue-type Plasmiongen Activator -Effects of Disulfide Bond Formation on N-linked Glycosylafion and Secretion. J Biol Chem 1995, 270:47974804. Brittis PA, Silver ~: Exogenous Glycosaminoglycans Induce Complete Inversion of Retinal Ganglion Cell Bodies and Their Axons Within the Rellnal Neuruepithelium. Proc Natl Acad Sci U S A 1994, 91:7539-7542. Downs D, Xu YY, Tang I, Wang CS: Proline-rich Domain and Glycosylalion are not Essential for the Enzymic Activity of Bile Salt-actlvated Lipase. Kinetic studies of T-BAL, a Truncated Form of the Enzyme, Expressed in Escherichia CoIL Biochemistry 1994, 33:7979-7985. Kasturi S, labbar MA, Sen GC, Sen I: Role of Glycosylation in the Biosynthesis and Activily of Rabbit Testicular Angiotensin-converfing Enzyme. Biochemistry 1994, 33:6228 6234. Kaushal S, Ridge KD, Khorana HG: Slructure and Function in Rhodopsin - lhe Role of Asparagine-tinked Glycosylalion. Proc Natl Acad Sci U S A 1994, 91:4024~1028. Kim HH, Yamaguchi Y, Masuda K, Matsunaga C, Yamamoto K, Irimura T, Takahashi N, Kalo K, Arata Y: O-Glycnsylalion in Hinge Region of Mouse Immunoglobulin G2B. J Biol Chem 1994, 269:12345 12350. Kimura F, Suzu S, Nakamura Y, Wakimoto N, Kanatani Y, Yanai N, Nagala N, Motoyoshi K: Struclural Analysis of Proteoglycan Macrophage Colony-stimulating Factor. J Biol Chem 1994, 269:19751-19756. Kokenyesi R, Bernfield M: Core Prolein Slructore and Sequence Determine the Sile and Presence ot Heparan Sulfate and Choudroifin Sulfate on Syndecan-l. I Biol Chem 1994, 269:12304 12309. Kusui T, Benya RV, Barley JE, lensen RT: Glycnsylation of Bomb•sin Receptors: Characterization, Effect on Binding, and G-prolein Coupling. Biochemistry 1994, 33:12968 12980.
Leconle I, Carpenher JL, Clauser E: The Functions of the Human Insulin Receptor are Affected in Different Ways by Mutation of Each of the Four N g l y c o s y l a t i o n Sites in Ihe Beta Subunit. I Bin/Chem 1994, 269:18062 18071. Lu HS, Chang D, Philo JS, Zhang K, Narhi LO, Liu NL, Zhang M, Sun JL, Wen J. Yanagihara D, Karunagaran D, Yarden Y, Ra(zkin 8: Studies on the Structure and Function of Glycosylated and Nonglycosylated Neu Differentiation Factors *Similarities and Differences of the Alpha and Beta Isoforms. J Biot Chem 1995, 270:4784~791. Lubas WA, Smith M, Start CM, Hanover JA: Analysis of Nuclear Pore Prolein P62 Glycosylalion. Biochemistry 1995, 34:1686 1694. Nunez E, Aragon C: Slruclural Analysis and Functional Role of lhe Carbohydrale Compouenl of Glycine Transporter. J Biol Chem 1994, 269:16920-16924. Taverna FA, Wang LY, Macdonald JF, Hampson DR: A Transmembrane Model for an Ionolropic Glutamate Receptor Predicted on Ihe Basis of the Location of Asparagine-linked Otignsaccharides. J Biol ChPm 1994, 269:14159 14164. Tse CM, Levine SA, Yun CHC, Khurana S, Donowitz M: Na+/H+ Exchanger-2 is an O-linked Bul nol an N-linked Sialoglycoprotein. Biochemistry 1994, 33:12954 12961. Wojczyk B, Shakineshleman SH, Doms RW, Xiang ZQ, Ertl HCJ, Wunner WH, Spitalnik SL: Stable Secretion of a soluble, Oligomeric Form of Rabies Virus Glycoprotein: Influence of N-glycan Processing on Secretion. Biochemistry 1995, 34:2599 2609. Zhang LI, Esko ID: Amino Acid Determinants that Drive Heparan Solfale Assembly in a proteoglycan. J Biol Chem 1994, 269:19295-19299.
Miscellaneous Boer H, Tenhoeveduurkens RH, Lolkema IS, Robillard GT: Phosphorylation Site Mutants of the Mannitol Transport Protein Enzyme limb of Eschecichia Colt: Studies on the Interaction Between the Mannitol Translocating C-docnain and the Phnsphorylation Site on the Energy-coupling B-domain. Biochemistry 1995, 34:3239 3247. 8ucala R, Makita Z, Vega G, Grundy S, Koschinsky 1, Cerami A, Vlassara H: Modification of Low Density Lipoprotein by Advanced Giycation End Products Contributes to the Dyslipidemia of Diabetes and Renal Insufficiency. Proc Nail Acad Sci U S A 1994, 91:9441-9445. Chap•lie S, Verchere JF: A C-13 and W-183 NMR Study of the Structures of Tungstale and Molybdale Complexes of Volemitol. Carbohydr Res 1995, 266:161-170. Elashry ESH, Harold HA, Elhabrouk M: Isobutylidenation of 1-C-subslituled Polyols. Attempted Exleosiou of the NMR Shift Rule Via Ibe Chemical Shift Difference of Their Two Methyl Groups. Carbohydr Res 1995, 267:177-186. Ho SN, Buyer SH, Schreiber SL, Danishefsky SJ, Crabtree GR: Specific Inhibition of Formation of Transcription Complexes by a Calicheamicin Olignsaccharide: a paradigm for the Development of Transcriptional Antagonists. Proc Natl Acad Sci U S A 1994, 91:9203-9207. Hresko RC, Kruse M, Strube M, MueCkler M: Topology of the Glut 1 Glucose Transporter Deduced from Glycosylafion Scanning Mutagenesls. J glol Chem 1994, 269:20482 20488. Katakis I, Ye L, Heller A: Electrostatic Control of the Electron Transfer Enabling Binding of Recombinant Glucose Oxidase and Redox Polyeleclrolytes. J Am Chem Soc 1994, 116:3617-3618. Ledesma MD, 8onay P, Colaco C, Avila J: Analysis of Microtubule-associated Protein Tau Glycalion in Paired Helical Filaments. J Biol Chem 1994, 269:21614-21619. Miyata T, Inagi R, Wada Y, Ueda Y, lida Y, Takahashi M, Tani~uchi N, Maeda K: Glycation of Human Beta(2)-microglobulin in Patients with Hemodialysisassociated Amyloidnsis: Identification of the Glycated Sites. Biochemistry 1994, 33:12215-12221. Mossine W, Glinsky GV, Barnes CL, Feather MS: Crystal Struclure of an Amadori Compound, N-(1-deoxybeta-D-fructopyranns-l-yll -glycine ("D-fructnseg|ycine'). Carbohydr Res 1995, 266:5 14. Raiet MC, Axeios MAV, Thibauh IF: Pectins of Lemon Cell Walls. 2. Gelation Properties of Extruded Lemon Cell Walls and Their Water-soluble Pectins. Carbohydr Res 1994, 260:271 282. Spooner PJR, Rutherford NG, Waits A, Henderson PlY: N M R Observation of Subslrale in Ihe Binding Site of an Active Sugar-H+ Symport Protein in Native Membranes. Proc Nail Acad Sci U S A 1994, 91:3877-3881.
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Biophysical methods Crystallization techniques • X-ray analysis • Automated assignments Takahashi M, tu YB, Myint 1-, Fujii J, Wada Y, Taniguchi N: In Vivo Glycation of Aldehyde Reduclase, a Major 3-deoxyglucnsone Reducing Enzyme: Identification of Glycation Sites. Biochemistry 1995, 34:1433-1438. Wellsknecht KJ, Zyzak DV, Litchlleld JE, Thorpe SR, 8aynes JW: Mechanism of Autoxidative Glycosylallon: Idenlificalion of Glyoxal and Arabinose as
Intermediales in the Autoxidative Modification
of Proteins by Glucose. Biochemistry 1995, 34:3702-3709. Yan SD, Chen X, Schmidt AM, Brett J, Godman G, Zou YS, Scott CW, Caputo C, Frappier T, Smith MA, Perry G, Yen SH, Stern D: Glycated Tau Protein in Alzheimer Disease: a Mechanism for Induction
of Oxidant Slress. Proc Natl Acad 5ci U 5 A 1994, 91:7787-7791. Yang CW, Vlassara H, Peten EP, He CJ, Striker GE, Striker LJ: Advanced Glycation End Products Up-regulate Gene Expression Found in Diabelic Glomerular Disease. Proc Natl Acad Sci U S A 1994, 91:9436-9440.
Biophysical methods Crystallization techniques Related reviews: Epitaxial growth of protein crystals from two-dimensional crystals on lipid layers (pp 640-644); Crystallization and structure determination of RNA (pp 645-649)% ; Freeze trapping of reaction intermediates (pp 656-663)~. Appleyard RJ, Shuttleworth WA, Evans iNS: Time• • resolved Solid-stale NMR Spectroscopy Of 5Eonlpyruvylshikimate-3-phosphale Synthase. Biochemistry 1994, 33:6812-6821. [32:[:]. Baeyens KJ, De 8ondt HL, Holbrook SR: Structure of an • • RNA Double Helix Including Uracil-uracil Base Pairs in an Inlemal Loop. Nature 5truct Bio11995, 2:56-62. [271]. Baeyens KJ, Jancarik J, Holbrook SR: Use of Low- - Molecular-Weight Polyethylene Glycol in the Crystallization of RNA Oligomers. Acta Crysta/logr /DJ 1994, 50:764-767. [34t"]. Berriman L Unwin N: Analysis of Transienl Structures • • by Cryomicroscopy Combined with Rapid Mixing of Spray Droplets. Ultramicroscopy 1994, 56:241-252. [3t~l.
Betzel C, Lorenz S, Furste JP, Bald R, Zhang M, Schneider • • TR, Wilson KS, Erdmann VA: Crystal Structure of Domain a of Thermus Flavus 5S RRNA and the Contribolion of Water Molecules 1o Its Structure. FEBS Lett 1994, 351:159 164. [42%]. Bo]duc JM, Dyer DH, Scott WG, Singer P, Sweet RM, • • Koshland DE Jr, Stoddard 8L: Mutagenesis and Laue Slructures of Enzyme Intermediates: Isocitrate Dehydrogenase. Science 1995,268:1312-1318. [16~]. Celia H, Hoermann L, Schultz P, Lebeau L, Mallouh V, Wigley DB, Wang IC, Mioskowski C, Oudet P: Three-Dimensional Model of Escherichia Coli Gyrase B Subonil Crystallized in Two.Dimensions on Novobiucin-Linked Phospholipid Films. J Mol Biol 1994, 236:618-628. Cruse WB, Saludjian P, Biala E, Strazewski P, Prange T, • • Kennard O: Structure of a Mispaired RNA Double Helix at 1.6-~ Resolution and Implicalions for the Prediction of RNA Secondary Structure. Proc Natl Acad Sci U S A 1994, 91:416(~4164. [43#]. Dins X, Rasmussen 8F, Petsko GA, Rinse D: Direct • • Slru(tural Observation of an Acyl-enzyme Inlermediate in the Hydrolysis of an Ester Substrate by Elastase. Biochemistry 1994, 33:9285-9293. [22~:]. Duke EMH, Wakatsuki S, Hadfield A, Johnson LN: Laue • and Monochromatic Diffraction Studies on Catalysis in Phosphorylase b Crystals. Protein Sci 1994, 3:1178-1196. [6:~]. Edwards AM, Oarst SA, Hemming-Ju]seth S, Kornberg " • RD: Epitaxial Growth of Three-dimensional Protein Crystals from Two-dimensional Crystals on Lipid Layers. Nature 5truer Biol 1994, 1:195-197. [4]. Frank J: Approaches 1o Large.scale Structures. Curr Opin • Struct Bio11995, 5:194-201. [411]. F016p V, Phizackedey RP, Soltis 5M, Clifton II, Wakatsuki • S, Err'nan ], Hajdu I, Edwards SL: Laue Diffraction Study on the Structure of Cytochrome c Peroxidase Compound I. Structure 1994, 2:201-208. [85]. Hemming SA, Bochkarev A, Darst SA, Kornberg RD, Ala P, • • Yang DSC, Edwards AM: The Mechanism of Protein Crystal Growth from Lipid Layers. J Mol Bio11995, 246:308-316.15]. Kundrot CE: The Preparation and Crystallization of RNA: • • a Sparse Matrix Approach. Methods Enzymo11996, in press. [58"i"]. Leonard GA, McAuley HK, Ebel 5, Lough DM, Brown T, • • Hunter WN: Crystal and Molecular Structure of R(CGCGAAUUAGCG): an RNA Duplex Containing Two G(anti).A(anti) Base Pairs. Structure 1994, 2:483~194. [231]. Mcdermott AE, Creuzet F, Gebhard R, Vanderhoef K, Levitt MH, Herzfeld J, Lugtenburg J, Griffin RG:
Determination of Internuclear Distances and the Orientation of Functional Groups by Solid-state NMR: Rotational Resonance Study of the Conformation of Retinal in Bacteriorhodopsin. Biochemistry 1994, 33:6129-6136. Navaza J: AMoRe: an Automated Package for Molecular • Replacement. Acta CrystaUogr [AI 1994, 50:157-163. [56+]. Nienhaus GU, Mourant JR, Chu K, Erauenfelder H: • • Ligand Binding lo Heine Proteins: the Effect of Light on Ligand Binding in Myoglobin. Biochemistry 1994, 33:13413-13430. [37~]. Pley HW, Flaherty KM, McKay DB: Three-dimensional • • Structure of a Hammerhead Ribozyme. Nature 1994, 372:68 74. [261]. Rodgers OW: Cryocrystallography. Structure 1994, • • 2:1135-1140.. [8~] [29~]. Ruiz T, Erk I, Lepault l: Electron Cryomicroscopy of • • Vitrified Biological Specimens-lowards High Spatial and Temporal Resolution. Bio Cell 1994, 80:203-210. [40~:]. 5amatey FA, Zaccai G, Engelman DM, Etchebest C, Popot JL: Rotational Orientation of Transmembrane AlphaHelices in Bacteriorhndopsin - a Neutron Diffraction Study. J Mol Bio11994, 236:1093 1104. Schindelin H, Zhang M, Bald R, Ffirste J-P, Erdmann • • VA, Heinemann U: Crystal Structure of an RNA Dodecamer Containing the Escherlchia Coil ShineDalgarno Sequence. l Mol Bio11995, 249:595-603. [571]. Schlichting I, Berendzen J, Phillips GN Jr, • • Sweet RM: Crystal Structure of Photolyzed Carboomonoxymyoglobin. Nature 1994, 371:808812. [50~]. Tens T-Y, Srajer V, Molfat K: Photolysis-induced • • Structural Changes in Single Crystals of Carbonmonoxymyoglobin al 40K. Nature Struct Biol 1994, 1:701-705. 149~-]. Yu CA, Xia D, Deisenhofer }, Yu L: Crystallization of Milochondrial Cyluchrome B-c(1) Complex from Gel with or Without Reduced Pressure, l Mol Biol 1994, 243:802-805.
X-ray structure analysis Related review: Ab initio phase determination and phase extension using non-crystallographic symmetry (pp 650-655) Cornea-Hasegan MA, Zhang Z, Lynch RE, Marinescu • DC, Hadfield A, Muckelbauer IK, Munshi S, Tong L, Rossmann MG: Phase Refinement and Extension by Means of Non-crystallographic Symmetry Averaging Using Parallel Computers. Acta Crystallogr IDI 1995, in press. [25]. Drendel WB, Dave RD, Jain S: Forced Coalescence Phasing: a Method for Ab Initio Determination of Crystallographic Phases. Proc Nat/Acad Sci U S A 1995, 92:547-551. llang JS, 8runger AT: Protein Hydration Observed by X-ray Diffraction - Solvation Properties of Penicillopepsin and Neuraminidase Crystal Structures. J Mol Biol 1994, 243:100-115. Kroeger KS, Kundrot CE: A Gas Cell for Collecting X-ray Diffraction Data from Proteins. J Appl Crystallogr 1994, 27:609-612. Muckelbauer JK, Kremer M, Minor I, Tong L, Zlomick • A, Johnson JE, Rossmann MG: The Structure Determination of Coxsackievirus B3 (CVB3) to 3.5,~ Resolulion. Acta Crystallogr [DJ 1995, 51:653-667. [29]. Muller I-, Oehlenschlager F, Buehner M: Human Interteukin-4 and Variant R88Q: Phasing X-ray Diffraction Data by Molecular Replacement Using X-ray and Nuclear Magnetic Resonance Models. l Mol Bio11995, 247:360~372
Pascal SM, Cross TA: Polypeplids Cooformalional Space - Dynamics by Solution NMR Disorder by X-ray Crystallography. / Mol Biol 1994, 241:431 ~,39. Schiffer CA, Huber R, Wuthrich K, Vangunsteren WF: Simultaneous Refinement of the Slructure of BPTI Against NMR Data Measured in Solution and X-ray Diffraction Dala Measured in Single Crystals. J Mot Bio11994, 241:588 599. Shi D, Hsiung HH, Pace RC, Stokes DE: Preparation and Analysis of Large, Flat Crystals of Ca2+-ATPase for Electron Crystallography. Biophys ] 1995, 68:1152 1162. Shinzawaitoh K, Ueda H, Yoshikawa S, Aoyama H, Yamashita E, Tsukihara T: Effects of Ethyleneglycol Chain Length of Dodecyl Polyethyleneglycol Monoelher on lhe Crystallization of Bovine Heart Cylochrome C Oxidase. J Mol Biol 1995, 246:572-575. Speir JA, Munshi S, Wang G, Baker TS, Johnson JE: • Structures of the Native and Swollen Forms of Cowpea Chlorotic Motile Virus Determined by Xray Crystallography and Cryo Eleclron Microscopy. Structure 1995, 3:63-78. [41].
Automated resonance assignments in NMR spedra Related review: Automated analysis of nuclear magnetic resonance assignments for proteins (pp 664-673) Abseher R, Ludemann S, Schreiber H, Steinhauser O: Influence of Molecular Motion on the Accuracy of NMR-Derived Distances. a Molecular Dynamics Study of Two Solvated Model Peptides. J Am Chem Soc 1994, 116:4006~I018.
Barrels C, WLithrich K: A Spectral Correlation Function • for Efficient Sequential NMR Assignments of Uniformly tSN-labeled Proteins. I Biomol NMR 1994, 4:775 785. [53]. Blommers MJ), Nanz D, Zerbe O: Determination of the Backbone Torsion Angle Epsilon in Nucleic Acids. J Biomol NMR 1994, 4:595 601. Boelens R, Burgering M, Fogh RH, Kaptein R: Time-Saving Methods for Heteronuclear Multidimensional NMR Of (C-13,N-15) Doubly Labeled Proteins. ] Biomol NMR 1994, 4:201-213. 8ornet O, Lancelot G, Chanteloup L, Thuong NT, Beau JM: Selectively C-13-enricbed DNA: C-13 and H-1 Assignments of a Triple Helix by Two-dimensional Relayed HMQC Experiments. J Biomol NMR 1994, 4:575 580.
Brown IW, Huestis WH: Quantification of Twodimensional NOE Spectra Via a Combined Linear and Nonlinear Least-squares Fit. J Biomol NMR 1994, 4:645-652.
8ruschweiler R, Case DA: Adding Harmonic Motion to the Karplus Relation for Spin-spin Coupling. l Am Chem SOC 1994, 116:11199-11200. Bruschweiler R, Wright PE: NMR Order Parameters of Biomolecules: a New Analytical Representation and Application to the Gaussian Axial Fluctuation Model. J Am Chem Soc 1994, 116:8426-8427. Celda B, Biamonli C, Arnau MJ, Tejero R, Montelione GT: Combined use of C-13 Chemical Shift and H-1 AlphaC-13 Alpha Heteronuclear NOE Data in Monitoring a Prolein NMR Structure Refinement. I Biomol NMR 1995, 5:161-172. Clore GM, Robien MA, Gronenbom AM: Exploring the Limits of Precision and Accuracy of Protein Structures Determined by Nuclear Magnetic Resonance Spectroscopy (VOl 231, Pg 82, 1993). J Mol Bio11994, 237:243. Connolly PJ, Stern AS, Hoch JC: Estimating Protein Fold from Incomplete and Approximate NMR Data. I Am Chem Soc 1994, 116:2675-2676. Curley RW, Panigot MJ, Hansen AP, Fesik SW: Sterenspecific As~ignmenls of Glycine in Proteins