Cell free transcription and translation of rotavirus RNA

Cell free transcription and translation of rotavirus RNA

Vol. 88, No. 3, 1979 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS June 13, 1979 Pages 791-796 CELL FREE TRANSCRIPTION AND TRANSLATION J...

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Vol. 88, No. 3, 1979

BIOCHEMICAL

AND BIOPHYSICAL

RESEARCH COMMUNICATIONS

June 13, 1979

Pages 791-796

CELL FREE TRANSCRIPTION

AND TRANSLATION

J. Cohen* *

Station

de Recherches

Grignon,

Received

and P. Dobos**

de Virologie

et d'Immunologie

INRA 78850,

Thiverval-

France

** Department Guelph,

OF ROTAVIRUS RNA

of Microbiology, Guelph,

April

College

Ontario

of Biological

Science,

University

of

NlG 2Wl

3,1979

SUMMARY ____ Rotavirus single stranded RNA synthesized in vitro by endogenous RNA transcriptase consists of 11 segments that hybr??ii%-i?with genomic RNA. It displays messenger activity when incubated with rabbit reticulocyte lysate. The products of translation were precipitable by anti-rotavirus serum, but not by normal serum. INTRODUCTION Rotavirus

RNA polymerase

when the outer

capsid

calcium

chelation

(1,2).

exhibit

a highly

active

stranded RNA.

is

layer

is

rotavirus

with

polypeptide

MATERIALS

AND METHODS

a) Preparation

from

that

single

reovirus might

the rotavirus

stimulate

removed

polymerase

enzyme product

characterize

within

Dense (D) particles

genome as template, By analogy

found

the

virion

fully

synthesizes,

stranded

serve

as messenger.

double

hybridizes

with

product

in a rabbit

that

The data

its

viral

the --in vitro

presented

and demonstrate reticulocyte

by

treatment

the

can be hypothesized

active

particles

by this using

RNA that

it

and becomes infectious

obtained

(3,4)

polymerase

synthesis

the

here

ability

to

lysate.

of SS RNA

The isolation and purification of calf rotavirus, as well as the in vitro production of rotavirus SS RNA have been described previously (1). For mass production of SS RNA 500 pg of D particles were suspended in 5 ml of reaction mixture (containing the four nucleoside triphosphates, 2 mM each; MgC12, 10 mM; phosphoenol pyruvate, 5 mg/ml; pyruvate kinase, 0.5 mg/ml; tris pH 8, 100 mM). The reaction mixture was incubated at 370C for 6 hours, followed by ultracentrifugation at 35,000 rpm for 60 minutes to remove rotavirus particles. The supernatant was extracted twice with phenol and 0006-291X/79/110791-06$01.00/0 791

Copyright @ 1979 by Academic Press. Inc. rights of reproduction in any form reserved

All

Vol. 88, No. 3, 1979

BIOCHEMICAL

AND BIOPHYSICAL

RESEARCH COMMUNICATIONS

the RNA precipitated with 66% ethanol at -200C. The dense precipitate was dissolved in sterile distilled water and an equal volume of 4 M LiCl solution was added and SS RNA was allowed to precipitate overnight at -2ooc. This procedure was repeated twice in order to remove trace amounts At this step the yield, of DS RNA which remained in the supernatant. estimated by spectrophotometry (O.D. 260) was 1.2 mg of RNA. The transcription product was analyzed by electrophoresis either in 5% polyacrylamide slab gels or using composite agarose-acrylamide (0.6% vs 2%, respectively) slab gels as described by Loening (5). The RNA was stained with ethidium bromide, or in case of isotopically labeled RNA, it was detected by fluorography as described by Laskey and Mills (6). b) Cell

free

protein

synthesis

Rotavirus SS RNA was translated in a rabbit reticulocyte lysate prepared essentially as described by Pelham and Jackson (7). Incorporation [35S]-LMethionine into protein was measured by spotting 1 ~1 aliquots of the 25 ul incubation mixture on Whattman 3 MM paper. After precipitation in cold, followed by hot 5% TCA (containing 5% casamino acids), the papers were washed in ethanol, dried, and the radioactivity counted in a liquid scintillation counter using a toluene based scintillation cocktail. All values were corrected for 0 time control. The translation products were analyzed by electrophoresis in 12.5% polyacrylamide slab gels as described by Laemmli (8) followed by autoradiography. Immunoprecipitation was performed as described by Kerr --et al. (9). RESULTS AND DISCUSSION a) Characterization

of the

When tritiated profile

polymerase

SS RNA was hybridized

obtained

to the

rotavirus

after

pattern

with

fluorography

obtained

with

(Fig.

purified

product an excess

viral

DS RNA (Fig.

that

each of the viral

genome segments

vitro

into

SS RNA.

the

did

not

correspond

particle. large the

virion

size

class

RNA's.

would segment

class

were

(Fig.

1B) indicating

RNA is

reduced

less

1C).

be expected (Mol.

wt.

than

gel

the

stranded

2.2 x 106)(10,11).

of each

in the

segment virus of the

to that

present

with

copy of the

and small

bands

no precise

size by

of SS RNA were

23s ribosomal largest

in

of large

was analyzed

eight

indi-in

hybrid

transcription

polymerase

However,

792

transcribed

of the middle

band co-migrated

This

the dsRNA hybrids

the --in vitro

electrophoresis,

single

fully

when compared

those

identical

16).

observed

lA,

of the endogenous

The slowest for

of those

in quantity that

were

amounts

in Figure

efficient

agaros-acrylamide (Fig.

ratio

as shown

When the product

composite resolved

to the molar

For example, size

relative

RNA, the gel

1A) was qualitatively

cated

However,

of viral

RNA as

DS RNA genome

molecular

weight

Vol. 88, No. 3, 1979

BIOCHEMICAL

AND BIOPHYSICAL

t 16s

t 23s Figure

1:

Electrophoretic

pattern

of j&

RESEARCH COMMUNICATIONS

vitro

transcription

product

Acrylamide gel electrophoresis in 5% gel of 3H-uridine labeled transcription product (SS RNA) annealed with excess unlabeled, denatured virion DS RNA (line A). Approximately 5 ug of purified DS RNA was annealed with 15,000 cpm of transcriptase product as described previously (1). The preparation was treated with RNase A (10 ug/ml in 0.3 M NaCl) precipitated with 66% ethanol and resuspended in Loening's buffer. After electrophoresis, the gel was processed for fluorography. On line B and C the genome template and the transcriptase product are analyzed in composite agarose - 2% E. coli 23s and acrylamide gels and stained with ethidium bromide. 16s rRNA's were run in parallel wells to serve as molecular weight markers. L, M, and S indicates the location of large, medium, and small size class virion dsRNA's in lines A and B. Migration was from left to right.

determination

could

denaturing

be done as electrophoresis Traces

conditions.

--in vitro

transcription

product

When used in protein

synthesis,

tation

since

b) Translation

of --in vitro

lysates

resulted

molecular

weight,

at a linear

rate

lower

was analyzed

for

30 minutes

however,

the

initial it

stopped

rate

at 37'C

precipita

removed

by LiCl

protein

synthes is

precipi-

and for

synthesis

incorporation

2 hours acid

continued

at 22'C

incorporation

large

(Fig.

was higher

2).

was

15 fold above the control.

20 minutes

(12).

lysates

into

This

the

tion.

[35S]-L-Methionine

of amino

793

1C where

reticulocyte

RNA about

after

LiCl

under

SS RNA to rabbit

product.

of protein

completely

free

performed

in Fig.

reticulocyte

of

the extent

increased by the added rotavirus 37'C,

cell

rotavirus

precipitable

temperature,

before

rabbit

the incorporation

acid

visible

DS RNA was always

SS RNA in produced

in

of DS RNA are

known to inhibit

of rotavirus

Addition

At the

DS RNA is

was not

than

at 2Z°C,

of incubation.

The

At

Vol. 88, No. 3, 1979

8lOCHEMlCAL

AND BIOPHYSICAL

RESEARCH COMMUNlCATlONS

6 6

40

hf’l mM Figure

2:

Time

course

of protein

Mg2+ concentration lation of rotavirus

3:

120

160200

IRNA1

pg/ml

synthesis

Control lysates (open symbols) and reticulocyte mented with 24 ug/ml of rotavirus SS RNA (filled [35S]-L-Methionine incubated at 370C and 220C. assayed by taking 1 ~1 aliquots at various times lysate 220C (0) and 370C (A); and lysate with 24 220C (0) and 370C (A). Figure

80

optimum and RNA saturation SS RNA

lysates supplesymbols) were incorporation was as shown. Control rig/ml of SS RNA at

curve

for

the

trans-

assays were performed In the rabbit reticulocyte system, translation Samples of 1 ~1 were removed at at 22OC in a total volume of 25 ~1. and processed to measure the incorpora20, 40, 835 and 120 minutes, tion of [ S]-L-Methionine into TCA precipitable material. The Mgtt concentration optimum was determined using 80 mM Kt and 24 pg/ml of SS RNA. The RNA saturation curve was measured using a Kt of 80 mM and a Mgtt of 0.7 mM.

optimal

magnesium

concentration

ion

was 0.6

DS RNA could

of exogenous

100 mM) potassium

shown

a 25 ~1 assay for

inhibition

RNA.

concentration

concentration

synthesized

of added in

was 1 mM and the

Figure

messenger

(Fig.

In the limited

of 1 mM (data

in the RNA after

pattern cell

free

794

3).

not

SS RNA

Residual

traces

synthesis

range influence

tested

of

at high (from

on protein

50 to syn-

shown).

on SDS polyacrylamide system

a two hour

4.

optimal

of protein

had little

of the electrophoretic

of protein

absence is

ion

at a Mg"

A comparison gels

ng for

be responsible

concentrations

thesis

concentration

in the presence

incubation

period

slab or at 22'C

0

Vol. 88, No. 3, 1979

BIOCHEMICAL

DISTANCE Figure

4:

Analysis lysate

of the

AND BIOPHYSICAL

OF

protein

MIGRATION

products

synthesized

Purified rotavirus and --in vitro 12.5% polyacrylamide slab gels. proteins stained with coomassie radiograms of labeled products and analyzed in the same gel. the polypeptides produced with represents the immune precipitate B. Curves below are densitometric Track C (lower). Direction of

Without

added

reticulocyte products

lysate shows

to 12,000. protein. serum

SS RNA, little

several

4C).

proteins

(Fig.

polypeptide

4D).

of glycoprotein

in

molecular

weight

two bands

are also

for

the

synthesized

the molecular

precipitated

to the unglycosylated

by the

incubated

SS RNA directed

weight

range

as the major

a little

capsid

glycosylated

reticulocyte

from

rotavirus

by anti-rota-hyperimmune

migrate

outer

rabbit

in nuclease

of the rotavirus

is precipitated

in the

in

translation products analyzed in Track A shows rotavirus structural blue. Track B, C, and D are automade --in vitro (22OC, 2 hr incubation) Track B and C respectively represents or without rotavirus SS RNA. Track D of the material analyzed in Track tracings of Track B (upper) and migration is from left to right.

same mobility

Two heavy bands present

is

Analysis

One of them has the This

correspond

(Fig.

protein

RESEARCH COMMUNICATIONS

peptides,

faster

layer

of rotavirus 33,000

hyperimmune

form of the

795

than

structural

capsid rabbit

the doublet (apparent

and 31,000).

serum,

44,000

These

and could polypeptides

(Fig.

Vol. 88, No. 3, 1979

4D).

It

is

reticulocyte the

noteworthy

that

product

in Track

C (also

product

(Track

immunoprecipitated

smaller

polypeptides

termination class,

which

into in

BIOCHEMICAL

high the

the

compared very

fidelity

conditions

weight

polypeptides. control.

of labeled

labeled

results

messenger

(3,4).

Some of the

virion

culture, is

the

not

provide

evidence

activity

as it

studies

because

were

could

rotavirus

at present.

synthesized

by a specific

directed

not

protein

[35S]-L-

For this

reason

immune serum.

SS RNA obtained for

The results synthesis

be

of

seem to be virus

immune serum.

maps of

replicates

anti-rotavirus

rotavirus

detectable

peptide

and purification

using that

system

size

be translated

proteins

has been shown previously

polypeptides

on virus

free

eight

large

not

tryptic

growth

feasible

was established

are precipitated

used could

the cell

in

to premature

SS RNA of the

No labeled

proteins

thus

rotavirus

of translation

in

not present

immune precipitate

Unfortunately,

produced

as an endogenous

B) is

correspond

the experimental

in tissue

use in further

could

under

exhibits

they

In the

D).

they

present

in Track

due to degraded

to those

The above

present

or products

polypeptides

Methionine

polypeptide

products

immune precipitate

poorly

single

are visible;

molecular

labeled

the

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

--in vitro reovirus

specific will

in the

as be of

infected

cell. REFERENCES Cohen, J. (1977) J. Gen. Virol. 36, 395-402. Cohen, J., Laporte, J., Charpilienne, A., and Scherrer, R. (1978) Archiv. of Virology (In Press). 3. Levin, D.H., Kyner, D., and Acs, G. (1971) Biochem. Biophys. Res. Commun. 42, 454-461. 4. McDowell, M.J. and Joklik, W.K. (1971) Virology 45, 724-733. 5. Loening, V.E. (1967) Biochem. Journal 102, 251-257. 6. Laskey, R.A. and Mills, A.D. (1975) Eur. J. Biochem. 56, 335-341. Pelham, H.R.B. and Jackson, R.J. (1976) Eur. J. Biochem. 67, 247-256. ;: Laemmli, U.K. (1970) Nature (Lond.) 227, 680-685. 9. Kerr, I.M., Olshevsky, U., Lodish, H.F.,and Baltimore, D. (1976) J. of Virology 18, 627-635. 10. Verly, E. and Cohen, J. (1977) J. Gen. Virol. 35, 583-586. 11. Bellamy, A.R. and Joklok, W.K. (1967) 3. Mol. Biol. 29, 19-26. 12. Baglioni, C., Lenz, J.R., Maromey, P.A., and Weber, L.A. (1978) Biochemistry 17, 3257-3262. ::

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