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Contents of Volume 62
Contents of Volume 62 (2005) 357 –359 www.elsevier.com/locate/jmicmeth
Contents of Volume 62 Issue 1, July 2005 Research papers High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction H. Bertrand, F. Poly, V.T. Van, N. Lombard, R. Nalin, T.M. Vogel and P. Simonet (France) Detection of antibiotic resistance genes in different Salmonella serovars by oligonucleotide microarray analysis A.H.A.M. van Hoek, I.M.J. Scholtens, A. Cloeckaert and H.J.M. Aarts (The Netherlands, France) Application of a microplate scale fluorochrome staining assay for the assessment of viability of probiotic preparations H.-L. Alakomi, J. Ma¨tto¨, I. Virkaja¨rvi and M. Saarela (Finland) Design and application of an oligonucleotide microarray for the investigation of compost microbial communities I.H. Franke-Whittle, S.H. Klammer and H. Insam (Austria) An oligonucleotide microarray for the identification and differentiation of trichothecene producing and non-producing Fusarium species occurring on cereal grain M. Nicolaisen, A.F. Justesen, U. Thrane, P. Skouboe and K. Holmstrøm (Denmark) Evaluation of DNA extraction methods from mouse stomachs for the quantification of H. pylori by real-time PCR Y. Roussel, M. Wilks, A. Harris, C. Mein and S. Tabaqchali (United Kingdom, Australia) Comparison of NaOH-N-acetyl cysteine and sulfuric acid decontamination methods for recovery of mycobacteria from clinical specimens P.C.A.M. Buijtels and P.L.C. Petit (The Netherlands) Assessment of self-organizing maps to analyze sole-carbon source utilization profiles J. Leflaive, R. Ce´re´ghino, M. Danger, G. Lacroix and L. Ten-Hage (France) The use of RAPD genomic fingerprinting to study relatedness in strains of Acidithiobacillus ferrooxidans D.R. Waltenbury, L.G. Leduc and G.D. Ferroni (Canada) A Pyrosequencing assay for rapid recognition of SNPs in Mycobacterium tuberculosis embB306 region D. Isola, M. Pardini, F. Varaine, S. Niemann, S. Ru¨sch-Gerdes, L. Fattorini, G. Orefici, F. Meacci, C. Trappetti, M. Rinaldo Oggioni, the LONG-DRUG study group and G. Orru` (Italy, France, Germany)
1 13 25 37
57 71 83 89 103
113
Notes Bioactivity quantification of crude bacteriocin solutions A. Delgado, D. Brito, P. Fevereiro, R. Tenreiro and C. Peres (Portugal) Rapid protocol for electroporation of Clostridium perfringens A. Jira´skova´, L. Vı´tek, J. Fevery, T. Ruml and P. Branny (Czech Republic, Belgium) Enhanced swarming of bacteria on agar plates containing the surfactant Tween 80 C. Niu, J.D. Graves, F.O. Mokuolu, S.E. Gilbert and E.S. Gilbert (USA) Instructions to Authors
121 125 129 I
Issue 2, August 2005 Research papers A simple solid phase assay for the detection of 2,4-D in soil F.A. Toba and A.G. Hay (United States)
doi:10.1016/S0167-7012(05)00213-7
135
358
Contents of Volume 62
In situ and non-invasive detection of specific bacterial species in oral biofilms using fluorescently labeled monoclonal antibodies F. Gu, R. Lux, L. Du-Thumm, I. Stokes, J. Kreth, M.H. Anderson, D.T. Wong, L. Wolinsky, R. Sullivan and W. Shi (United States) The effect of different media on the survival and induction of stress responses by Campylobacter jejuni C. Murphy, C. Carroll and K.N. Jordan (Ireland) Sensitive genus-specific detection of Legionella by a 16S rRNA based sandwich hybridization assay T. Leskela¨, A. Tilsala-Timisja¨rvi, J. Kusnetsov, P. Neubauer and A. Breitenstein (Finland) Rapid mycobacteria drug susceptibility testing using Gel Microdrop (GMD) Growth Assay and flow cytometry Y. Akselband, C. Cabral, D.S. Shapiro and P. McGrath (United States) PCR restriction fragment length polymorphism analysis (PRA)-algorithm targeting 644 bp Heat Shock Protein 65 (hsp65) gene for differentiation of Mycobacterium spp. H. Kim, S.-H. Kim, T.-S. Shim, M.-n. Kim, G.-H. Bai, Y.-G. Park, S.-H. Lee, C.-Y. Cha, Y.-H. Kook and B.-J. Kim (South Korea) Advantages of peptide nucleic acid oligonucleotides for sensitive site directed 16S rRNA fluorescence in situ hybridization (FISH) detection of Campylobacter jejuni, Campylobacter coli and Campylobacter lari M.J. Lehtola, C.J. Loades and C.W. Keevil (United Kingdom) Multiplex PCR for screening of integrons in bacterial lysates B. Dillon, L. Thomas, G. Mohmand, A. Zelynski and J. Iredell (Australia) Rapid decay of Salmonella flagella antibodies during human gastroenteritis: A follow up study T. Dalby, M.A. Strid, N.H. Beyer, J. Blom, K. Mølbak and K.A. Krogfelt (Denmark) Fabrication and optimization of the multiplex PCR-based oligonucleotide microarray for detection of Neisseria gonorrhoeae, Chlamydia trachomatis and Ureaplasma urealyticum G. Shi, S.-Y. Wen, S.-H. Chen and S.-Q. Wang (China)
145 161 167 181
199
211 221 233
245
Issue 3, September 2005 Special Issue: 5th International Symposium on the Interface between Analytical Chemistry and Microbiology Guest Editors: D.S. Wunschel and K.L. Wahl Preface 5th International symposium on the interface between analytical chemistry and microbiology—April 19th to 21st, 2004: Hosted at Pacific Northwest National Laboratory A. Fox (United States), L. Larsson (Sweden), G. Allmaier (Austria), D. Wunschel and K. Wahl (United States)
257
Research papers Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on Matrix Assisted Laser Desorption/ Ionization whole cell protein fingerprints D.S. Wunschel, E.A. Hill, J.S. McLean, K. Jarman, Y.A. Gorby, N. Valentine and K. Wahl (United States) Optimisation of intact cell MALDI method for fingerprinting of methicillin-resistant Staphylococcus aureus K.A. Jackson, V. Edwards-Jones, C.W. Sutton and A.J. Fox (UK) 3-Hydroxy fatty acids in saliva as diagnostic markers in chronic periodontitis R. Ferrando, B. Szponar, A. Sa´nchez, L. Larsson and P.L. Valero-Guille´n (Spain, Sweden) Feasibility of assessment of regulatory lipids in breath condensate as potential presymptomatic harbingers of pulmonary pathobiology D.C. White, R. Geyer, J. Cantu, S.-C. Jo, A.D. Peacock, A.M. Saxton, S. Mani, M. Jett and O.R. Moss (USA, Germany) Automated methods for multiplexed pathogen detection T.M. Straub, B.P. Dockendorff, M.D. Quin˜onez-Dı´az, C.O. Valdez, J.I. Shutthanandan, B.J. Tarasevich, J.W. Grate and C.J. Bruckner-Lea (United States) An insulator-based (electrodeless) dielectrophoretic concentrator for microbes in water B.H. Lapizco-Encinas, R.V. Davalos, B.A. Simmons, E.B. Cummings and Y. Fintschenko (United States) In vivo microdialysis sampling of cytokines produced in mice given bacterial lipopolysaccharide X. Ao, R.F. Rotundo, D.J. Loegering and J.A. Stenken (USA)
259 273 285 293
303 317 327
Contents of Volume 62 NMR methods for in situ biofilm metabolism studies P.D. Majors, J.S. McLean, G.E. Pinchuk, J.K. Fredrickson, Y.A. Gorby, K.R. Minard and R.A. Wind (USA)
359
337
Note Identification of Helicobacter pylori surface proteins by selective proteinase K digestion and antibody phage display N. Sabarth, R. Hurvitz, M. Schmidt, U. Zimny-Arndt, P.R. Jungblut, T.F. Meyer and D. Bumann (Germany)
345
Author Index of Volume 62
351
Subject Index of Volume 62
355
Contents of Volume 62
357
Contents of Volume 62 Issue 1, July 2005 Research papers High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction H. Bertrand, F. Poly, V.T. Van, N. Lombard, R. Nalin, T.M. Vogel and P. Simonet (France) Detection of antibiotic resistance genes in different Salmonella serovars by oligonucleotide microarray analysis A.H.A.M. van Hoek, I.M.J. Scholtens, A. Cloeckaert and H.J.M. Aarts (The Netherlands, France) Application of a microplate scale fluorochrome staining assay for the assessment of viability of probiotic preparations H.-L. Alakomi, J. Ma¨tto¨, I. Virkaja¨rvi and M. Saarela (Finland) Design and application of an oligonucleotide microarray for the investigation of compost microbial communities I.H. Franke-Whittle, S.H. Klammer and H. Insam (Austria) An oligonucleotide microarray for the identification and differentiation of trichothecene producing and non-producing Fusarium species occurring on cereal grain M. Nicolaisen, A.F. Justesen, U. Thrane, P. Skouboe and K. Holmstrøm (Denmark) Evaluation of DNA extraction methods from mouse stomachs for the quantification of H. pylori by real-time PCR Y. Roussel, M. Wilks, A. Harris, C. Mein and S. Tabaqchali (United Kingdom, Australia) Comparison of NaOH-N-acetyl cysteine and sulfuric acid decontamination methods for recovery of mycobacteria from clinical specimens P.C.A.M. Buijtels and P.L.C. Petit (The Netherlands) Assessment of self-organizing maps to analyze sole-carbon source utilization profiles J. Leflaive, R. Ce´re´ghino, M. Danger, G. Lacroix and L. Ten-Hage (France) The use of RAPD genomic fingerprinting to study relatedness in strains of Acidithiobacillus ferrooxidans D.R. Waltenbury, L.G. Leduc and G.D. Ferroni (Canada) A Pyrosequencing assay for rapid recognition of SNPs in Mycobacterium tuberculosis embB306 region D. Isola, M. Pardini, F. Varaine, S. Niemann, S. Ru¨sch-Gerdes, L. Fattorini, G. Orefici, F. Meacci, C. Trappetti, M. Rinaldo Oggioni, the LONG-DRUG study group and G. Orru` (Italy, France, Germany)
1 13 25 37
57 71 83 89 103
113
Notes Bioactivity quantification of crude bacteriocin solutions A. Delgado, D. Brito, P. Fevereiro, R. Tenreiro and C. Peres (Portugal) Rapid protocol for electroporation of Clostridium perfringens A. Jira´skova´, L. Vı´tek, J. Fevery, T. Ruml and P. Branny (Czech Republic, Belgium) Enhanced swarming of bacteria on agar plates containing the surfactant Tween 80 C. Niu, J.D. Graves, F.O. Mokuolu, S.E. Gilbert and E.S. Gilbert (USA) Instructions to Authors
121 125 129 I
Issue 2, August 2005 Research papers A simple solid phase assay for the detection of 2,4-D in soil F.A. Toba and A.G. Hay (United States)
doi:10.1016/S0167-7012(05)00213-7
135
358
Contents of Volume 62
In situ and non-invasive detection of specific bacterial species in oral biofilms using fluorescently labeled monoclonal antibodies F. Gu, R. Lux, L. Du-Thumm, I. Stokes, J. Kreth, M.H. Anderson, D.T. Wong, L. Wolinsky, R. Sullivan and W. Shi (United States) The effect of different media on the survival and induction of stress responses by Campylobacter jejuni C. Murphy, C. Carroll and K.N. Jordan (Ireland) Sensitive genus-specific detection of Legionella by a 16S rRNA based sandwich hybridization assay T. Leskela¨, A. Tilsala-Timisja¨rvi, J. Kusnetsov, P. Neubauer and A. Breitenstein (Finland) Rapid mycobacteria drug susceptibility testing using Gel Microdrop (GMD) Growth Assay and flow cytometry Y. Akselband, C. Cabral, D.S. Shapiro and P. McGrath (United States) PCR restriction fragment length polymorphism analysis (PRA)-algorithm targeting 644 bp Heat Shock Protein 65 (hsp65) gene for differentiation of Mycobacterium spp. H. Kim, S.-H. Kim, T.-S. Shim, M.-n. Kim, G.-H. Bai, Y.-G. Park, S.-H. Lee, C.-Y. Cha, Y.-H. Kook and B.-J. Kim (South Korea) Advantages of peptide nucleic acid oligonucleotides for sensitive site directed 16S rRNA fluorescence in situ hybridization (FISH) detection of Campylobacter jejuni, Campylobacter coli and Campylobacter lari M.J. Lehtola, C.J. Loades and C.W. Keevil (United Kingdom) Multiplex PCR for screening of integrons in bacterial lysates B. Dillon, L. Thomas, G. Mohmand, A. Zelynski and J. Iredell (Australia) Rapid decay of Salmonella flagella antibodies during human gastroenteritis: A follow up study T. Dalby, M.A. Strid, N.H. Beyer, J. Blom, K. Mølbak and K.A. Krogfelt (Denmark) Fabrication and optimization of the multiplex PCR-based oligonucleotide microarray for detection of Neisseria gonorrhoeae, Chlamydia trachomatis and Ureaplasma urealyticum G. Shi, S.-Y. Wen, S.-H. Chen and S.-Q. Wang (China)
145 161 167 181
199
211 221 233
245
Issue 3, September 2005 Special Issue: 5th International Symposium on the Interface between Analytical Chemistry and Microbiology Guest Editors: D.S. Wunschel and K.L. Wahl Preface 5th International symposium on the interface between analytical chemistry and microbiology—April 19th to 21st, 2004: Hosted at Pacific Northwest National Laboratory A. Fox (United States), L. Larsson (Sweden), G. Allmaier (Austria), D. Wunschel and K. Wahl (United States)
257
Research papers Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on Matrix Assisted Laser Desorption/ Ionization whole cell protein fingerprints D.S. Wunschel, E.A. Hill, J.S. McLean, K. Jarman, Y.A. Gorby, N. Valentine and K. Wahl (United States) Optimisation of intact cell MALDI method for fingerprinting of methicillin-resistant Staphylococcus aureus K.A. Jackson, V. Edwards-Jones, C.W. Sutton and A.J. Fox (UK) 3-Hydroxy fatty acids in saliva as diagnostic markers in chronic periodontitis R. Ferrando, B. Szponar, A. Sa´nchez, L. Larsson and P.L. Valero-Guille´n (Spain, Sweden) Feasibility of assessment of regulatory lipids in breath condensate as potential presymptomatic harbingers of pulmonary pathobiology D.C. White, R. Geyer, J. Cantu, S.-C. Jo, A.D. Peacock, A.M. Saxton, S. Mani, M. Jett and O.R. Moss (USA, Germany) Automated methods for multiplexed pathogen detection T.M. Straub, B.P. Dockendorff, M.D. Quin˜onez-Dı´az, C.O. Valdez, J.I. Shutthanandan, B.J. Tarasevich, J.W. Grate and C.J. Bruckner-Lea (United States) An insulator-based (electrodeless) dielectrophoretic concentrator for microbes in water B.H. Lapizco-Encinas, R.V. Davalos, B.A. Simmons, E.B. Cummings and Y. Fintschenko (United States) In vivo microdialysis sampling of cytokines produced in mice given bacterial lipopolysaccharide X. Ao, R.F. Rotundo, D.J. Loegering and J.A. Stenken (USA)
259 273 285 293
303 317 327
Contents of Volume 62 NMR methods for in situ biofilm metabolism studies P.D. Majors, J.S. McLean, G.E. Pinchuk, J.K. Fredrickson, Y.A. Gorby, K.R. Minard and R.A. Wind (USA)
359
337
Note Identification of Helicobacter pylori surface proteins by selective proteinase K digestion and antibody phage display N. Sabarth, R. Hurvitz, M. Schmidt, U. Zimny-Arndt, P.R. Jungblut, T.F. Meyer and D. Bumann (Germany)
345
Author Index of Volume 62
351
Subject Index of Volume 62
355
Contents of Volume 62
357