Continuous asymmetrical flow field-flow fractionation for the purification of proteins and nanoparticles

Continuous asymmetrical flow field-flow fractionation for the purification of proteins and nanoparticles

Journal Pre-proofs Continuous asymmetrical flow field-flow fractionation for the purification of proteins and nanoparticles Maria Marioli, Wim Th. Kok...

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Journal Pre-proofs Continuous asymmetrical flow field-flow fractionation for the purification of proteins and nanoparticles Maria Marioli, Wim Th. Kok PII: DOI: Reference:

S1383-5866(19)33581-6 https://doi.org/10.1016/j.seppur.2020.116744 SEPPUR 116744

To appear in:

Separation and Purification Technology

Received Date: Revised Date: Accepted Date:

22 August 2019 4 January 2020 21 February 2020

Please cite this article as: M. Marioli, W. Th. Kok, Continuous asymmetrical flow field-flow fractionation for the purification of proteins and nanoparticles, Separation and Purification Technology (2020), doi: https://doi.org/ 10.1016/j.seppur.2020.116744

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© 2020 Published by Elsevier B.V.

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Continuous asymmetrical flow field-flow fractionation for the

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purification of proteins and nanoparticles

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Maria Marioli*, Wim Th. Kok

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Analytical Chemistry Group, van’t Hoff Institute for Molecular Sciences, University of Amsterdam,

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Postbus 94157, 1090 GD Amsterdam, The Netherlands

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Keywords: Field-flow fractionation, continuous, protein, nanoparticle, purification, patterned

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membranes

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*Corresponding author:

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Email: [email protected]

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Abstract

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We present a novel continuous two-dimensional asymmetrical flow field-flow fractionation (2D-

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AF4) system that is able to fractionate a feed solution of nano-sized solutes (e.g., proteins,

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nanoparticles) according to their size in aqueous solvents. The key component that generates the

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continuous separation is a microstructured ultrafiltration membrane with slanted grooves on its

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surface. The solutes are migrating over the grooves, which are causing a lateral displacement from

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the direction of the main channel flow, and they are exiting the channel at different outlets. The

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deflection angle depends on the mean layer thickness of the solutes and consequently on their

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hydrodynamic radius; with a specific cross-flow, larger solutes exhibit a larger deflection angle

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which results in a spatial separation. By adjusting the outlet flow and the cross-flow rate, the

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system can be optimized with respect to purity, recovery and speed. A prototype device has been

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designed and tested. A proof of principle of the continuous fractionation is demonstrated with

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mixtures of two model proteins, apoferritin (443 kDa) and thyroglobulin (669 kDa), and of two

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polystyrene latex standards with diameters of 34 and 102 nm.

2

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1 Introduction

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Size-selective separations of macromolecules and nanoparticles are of paramount importance in

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various fields. For instance, therapeutic proteins produced by modern biotechnology require a

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high purity of their monomeric form in the final product [1], and polymer-based or inorganic

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nanoparticles require a narrow size distribution for their proper function [2,3]. Of the techniques

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used for this purpose, membrane filtration suffers from low resolution and pore clogging when it

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is used to fractionate polydisperse samples, and ultracentrifugation is time consuming and

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requires extensive technical skills. Size exclusion chromatography (SEC) is a technique frequently

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used in analytical and in (semi-)preparative applications but it is poorly scalable, and it may lead

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to adsorption or shear degradation of some solutes. In downstream processing, the high cost of

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the chromatographic supports has led to the development of continuous/multicolumn systems

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(e.g., simulated moving bed chromatography, annular chromatography) [4,5] and membrane

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chromatography [6] to increase productivity.

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Asymmetrical flow field flow fractionation (AF4) is the field flow fractionation (FFF)

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subtechnique that separates nano-sized solutes based on their hydrodynamic size in an open

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channel by applying a cross-flow through an ultrafiltration (UF) membrane. It is applicable to

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samples of a very broad size range and chemistry such as biomolecules [7,8], drug delivery

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systems [9], and nanoparticles [10]. The loading capacity is inherently low (< 100 µg) as during

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separation the analytes are concentrated very close to the membrane with a mean layer thickness

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of a few microns. For this reason it has been used mainly as an analytical technique, although

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commercial semi-preparative long channels with a larger breadth (maximum breadth of ~ 5cm)

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compared to the conventional channels are occasionally used [11,12], and there have been several

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attempts to increase sample loading further. Bria et al. [13] investigated the effect of the breadth

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(up to a maximum breadth of 10 cm) on the sample loading, Maskos and Schupp [14] constructed

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a circular AF4 system with twelve channels in a quasi-parallel order and Lee et al. [15] developed

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a multiplexed hollow-fiber flow FFF system interconnecting five hollow fibers. Nevertheless,

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although larger channel dimensions and multilane systems may increase significantly the loading

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capacity, they also result in higher solvent consumption, larger footprint and/or more complex

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equipment.

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Another option to achieve higher throughput in AF4 is by developing a continuous two-

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dimensional FFF (2D-FFF) system. As defined by Giddings [16], in continuous 2D-FFF two

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displacements should occur simultaneously in different directions in a planar geometry, with at

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least one of them based on an FFF subtechnique. The first continuous 2D-FFF technique developed

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was a steric-sedimentation FFF system [17] and later continuous dielectrophoretic-gravitational

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FFF systems [18,19] were introduced. However, these systems were applicable only for micron3

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sized solutes such as microbeads and cells. A continuous fractionation of macromolecules was

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achieved by Vastamäki et al. [20,21] via a thermal field-flow fractionation system with a rotating

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wall. Nevertheless, this system is suitable mainly for organic solvents since thermal diffusion is

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weak in aqueous solutions. Kim and Moon [22] developed a 2D system combining isoelectric

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focusing (IEF) in the first dimension and a multilane AF4 channel configuration in the second

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dimension. Although this 2D system is able to spatially separate proteins, the two separation

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processes occur sequentially and therefore a continuous separation is not possible.

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Split-flow thin cell (SPLITT) fractionation is a technique related to FFF that can be

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operated in a continuous manner with different types of fields such as gravitational [23] and

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centrifugal [24]. It can fractionate microparticles with high resolution but for smaller components

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(i.e., operation in the diffusion mode) the resolution is inherently poor [25]. Another fundamental

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limitation of SPLITT fractionation is that it can only give binary (high – low) separations.

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Several other (non-FFF) continuous fractionation methods have been developed for nano-

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sized solutes but none of them is able to provide a high throughput size-based fractionation [26].

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Systems based on electrophoresis [27] or magnetophoresis [28] can fractionate macromolecules

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in a continuous flow but according to their electric or magnetic properties and not to their size.

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Continuous separations based on an acoustic field is able to separate particles only larger than

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100 nm [29,30], and deterministic lateral displacement with pillar arrays [31] requires

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nanofabrication and it has low throughput. An example of a size-selective continuous

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fractionation, which is related partly with our study, is a microfluidic channel with slanted grooves

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on its surface as developed by Bernate et al. [32]. Their method was suitable for micron-sized

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silica particles and cells, but cannot be used for nano-sized solutes since it is based on gravity and

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inertia effects.

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The objective of our study is to demonstrate that a continuous fractionation of mixtures of

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proteins or nanoparticles, based on their hydrodynamic size, can be achieved using an AF4

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channel with an UF membrane with slanted grooves (Fig. 1). A spatial separation is caused by the

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differences in the selectivity for the solutes in two dimensions, one dimension along the grooves

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and one dimension across the grooves. In the latter direction, the superimposition of the

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perpendicular grooves is causing an increase in selectivity as we have shown in a previous study

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[33]. We present a “proof-of-concept” investigation conducting physical experiments with

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microstructured (MS) membranes fabricated by hot-embossing and a prototype 2D-AF4 channel.

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2 Materials and Methods

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2.1

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Polystyrene latex (PS-latex) nanoparticles with nominal diameters of 34 nm and 102 nm, and

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narrow size distributions were purchased from Duke Scientific (Palo Alto, CA, USA). All other

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standards and reagents were obtained by Sigma–Aldrich (St. Louis, MO, USA) and were of high

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analytical purity grade. Hemoglobin from bovine blood, bovine serum albumin, γ-globulin from

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bovine serum, apoferritin from equine spleen and thyroglobulin from bovine thyroid were used

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as protein standards. Phosphate-buffer saline (PBS) with an ionic strength of 0.15M (20 mM due

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to sodium phosphate salts) and a pH of 7.2 was used as a diluent and as a carrier liquid for the

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proteins. A solution with 0.1% (w/v) sodium dodecyl sulfate (SDS) was used as carrier liquid and

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diluent for the PS latex standards.

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2.2

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The AF4 system was an Eclipse DualTec system (Wyatt Technology Europe, Dernbach, Germany)

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connected to an Agilent HPLC 1200 system (Agilent Technologies, Waldbronn, Germany) that

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consisted of a degasser, an isocratic pump, a UV detector and an autosampler equipped with an

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injection loop 100 μL and a thermostat. A second isocratic HPLC pump, Spectroflow 400 (Kratos,

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Ramsey, NJ, USA), was used to inject continuously the protein solution.

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2.3

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A patterned silicon (Si) wafer (LioniX BV, Enschede, The Netherlands) was used as a mold for the

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fabrication of the microstructured (MS) membranes. The wafer had an area of diameter 15.1 cm

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patterned with parallel grooves with a cavity width of 50 µm, a ridge width of 50 µm and a ridge

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height of 12 µm. Polyethersulfone (PES) membranes with 10 kDa molecular weight cut-off

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(MWCO) (Sartorius, Göttingen, Germany) were hot embossed against the Si wafer with an

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imprinter (Obducat, Sweden) at 120 °C and 40 bar for 180 sec, and the demolding was performed

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at 40°C, as it has been described in the literature [34]. Parts of the membrane were broken in

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liquid nitrogen and gold-sputtered for SEM imaging (XL30 ESEM-FEG, Philips, Eindhoven, The

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Netherlands).

Samples and carrier liquid

Instrumentation

Fabrication and characterization of the microstructured (MS) membranes

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To assess the effect of the grooves on the retention time and selectivity, the flat

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membranes (before hot embossing) and the MS membranes (after hot embossing) were tested on

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a commercial AF4 channel (Wyatt technology Europe) as it is described in the Supplementary

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Material. For this purpose, the flat membranes were cut with surgical scissors in the shape of the

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porous frit which supports the membrane. The MS membranes were cut in the same manner with

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the grooves aligned parallel or perpendicular to the channel flow. 5

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2.4

Design and operation of the 2D-AF4 system

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A commercial channel with a frit inlet (Wyatt Technology Europe) was converted into a 2D

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channel with six outlets (Fig. 2). The upper inlay with the frit inlet was modified to create 1 mm

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ports and internal threads for the outlets. Mylar A4 sheets (Mylar A grade) with a thickness of

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190 and 125 µm were cut to create the spacers for the 2D-AF4 channel. Two spacers were used

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(spacers A and B in Fig. 2a) which were positioned one over the other. The tip-to -tip length was

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13.3 cm, the breadth 2.1 cm and the area of the accumulation wall 22.4 cm2. In Fig. 2c the assembly

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of the 2D-AF4 channel is displayed. The MS membranes were cut with the grooves with an angle

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of 45° to the channel flow and in the shape of the porous frit (which supports the membrane) with

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surgical scissors.

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The flow distribution over the outlets was controlled with PEEK tubing of a suitable length

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and internal diameter (i.d.) for each outlet. Specifically, tubing with a nominal i.d. of 102 µm or

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127 µm and lengths of 0.3 – 1 m were cut such that the flow rate at outlets No 1 - 4 was ~ 8% of

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the total outlet flow rate and ~ 33% at outlets No 5 - 6. The batch mode experiments with the 2D-

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AF4 channel were carried out using the autosampler and splitting the inlet flow stream into a flow

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stream towards the frit inlet (𝑉𝑓) and a sample flow stream (𝑉𝑠). The ratio 𝑉𝑠: 𝑉𝑓 was 1:40

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regulated with suitable tubing. When the 2D-AF4 system was used in the continuous mode, the

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main HPLC pump was carrying the carrier liquid to the frit inlet (𝑉𝑓) and the second HPLC pump

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was used to provide the continuous flow of the feed solution (𝑉𝑠).

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The fractions were collected manually in Greiner polypropylene tubes and each fraction

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was analyzed offline with conventional AF4 as is described in the Supplementary Material. For the

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estimation of the recoveries, a calibration curve of each sample component was constructed

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diluting the initial mixture at appropriate concentrations.

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3 Results and Discussion

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3.1

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The SEM images of the MS membrane disks taken from the top (patterned) side and of the cross

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section are shown in Fig. 3. The patterned grooves on the membrane surface had the same

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dimensions with the Si wafer (i.e., a cavity width of 50 µm, a ridge width of 50 µm and a ridge

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height of approx. 12 µm) and round corners. When the MS membranes were cut with the grooves

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aligned parallel or perpendicular to the channel flow and tested on a conventional AF4 channel, it

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was revealed that the recoveries of the smaller proteins decreased. In particular, BSA (66.5 kDa)

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and γ-globulin (150 kDa) had much lower recoveries (<40%) compared to the flat membranes

Characterization of MS membranes

6

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(>75%). Nevertheless, the larger proteins, apoferritin (443 kDa) and thyroglobulin (669 kDa), had

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similar recoveries (>75%) when analyzed with flat or MS membranes.

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Apoferritin was chosen as the model compound to assess the effect of the grooves on the

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retention time, on the plate height and on the selectivity between the monomer and the dimer.

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The experimental results obtained with a cross-flow rate of 1.5 mL/min and an outlet flow rate of

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0.8 mL/min are displayed in Fig. 4 and in Table 1. The retention times were higher with the MS

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membranes compared to the flat membranes and the increase was larger when the channel flow

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was transverse to the grooves. A patterned surface with shallow grooves can be described

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macroscopically as a surface with slip. The slip is smaller when the flow is across the grooves

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compared to the flow along the grooves [35] which can explain the higher reduction of the zone

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velocity over perpendicular grooves.

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Furthermore, it was revealed that the selectivity remained virtually unchanged with MS

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membranes with parallel grooves while it increased significantly with perpendicular grooves (Fig.

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4, Table 1). The plate height increased in both cases as expected; for perpendicular grooves, the

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plate height increases because the solutes need to diffuse out of the grooves, and, for parallel

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grooves, because the velocity is lower in the edges of the grooves. For the MS membranes with

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perpendicular grooves, the results suggest also that, although the plate height is increasing,

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resolution appears to increase because of the higher selectivity. The potential benefits of applying

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a wall with grooves perpendicular to the channel flow in FFF have been discussed in previous

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studies [33,36].

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The increase in selectivity over perpendicular grooves (Table 1), although statistically

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significant, is relatively small (~10%). It is sufficient to demonstrate the proof-of-concept for the

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2D separation but the difference in selectivities in the two dimensions (across and along the

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grooves) should be higher for an efficient fractionation. In a previous study, we have presented a

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theoretical model to solve the analytical problem of the mass transfer over perpendicular grooves,

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along with physical experiments and simulations [33]. The results suggested that a much higher

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selectivity can be achieved by optimizing the groove structure, for instance by patterning grooves

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with sharper edges. As Giddings et al. [36] already suggested, any departure of the rectangular

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shape of the grooves could lead to a lower increase in selectivity but a similar increase in retention

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time and in plate height.

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Furthermore, since the solutes may accumulate in the edges of the grooves, to avoid

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overloading the optimal groove structure should be similar with the theoretical model (i.e., very

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small ridge width, high aspect ratio of the grooves to avoid slip and groove height close to the

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mean accumulation thickness). However, practically it is difficult to achieve very small ridge

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width, rectangular structure and high aspect ratio of the grooves. Therefore, for practical reasons 7

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ridge and cavity width are larger than the optimal values and subsequently groove height needs

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also to be increased to increase retention.

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The difference in selectivity that we observe along and across the grooves entails that a

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continuous separation can be accomplished when the grooves are placed at an angle 45° to the

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channel flow. This can be explained by expressing the displacement of the solutes over the slanted

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grooves as the sum of two displacements that occur simultaneously, one along and one across the

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grooves (Fig. 5). For a retained solute, the zone velocity along the grooves (𝑣𝑖, ∥ ) is larger than

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across the grooves (𝑣𝑖, ⊥ ) and the deflection angle (in radians) 𝜗𝑖 can be estimated by, 𝜗𝑖 =

𝑣𝑖, ⊥ 𝜋 ― 𝑎𝑟𝑐𝑡𝑎𝑛 4 𝑣𝑖, ∥

(1) 𝑣2, ⊥

𝑣1, ⊥

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Consequently, the deflection angle between two components is different when

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selectivity between two sample components is 𝑎 ⊥ across the grooves and 𝑎 ∥ along the channel,

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then 𝑣2, ⊥ 𝑣2, ∥

=

( ) 𝑎⊥ 𝑎∥



𝑣1, ⊥ 𝑣1, ∥

𝑣2, ∥

≠ 𝑣1, ∥ . If the

(2)

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and, therefore, a separation occurs when 𝑎 ⊥ ≠ 𝑎 ∥ . From the retention times in Table 1, it can be

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estimated that for the monomer and the dimer of apoferritin the deflection angles would be 4°

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and 7° respectively.

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It is important to note that, although the hot embossing method appears to be suitable to

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show the proof-of-concept, and it is a relatively fast and low-cost technique that offers scalability,

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it results in higher actual MWCO. In addition, the edges of the grooves become round instead of

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rectangular. Therefore, in the future the method should be optimized to avoid these effects or

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other techniques should be explored to fabricate grooves which retain the membrane porosity

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and result in sharper edges.

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3.2

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After confirming that the selectivity between two sample components was different across and

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along the grooves with MS membranes and, hence, a spatial separation could occur, a 2D-AF4

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channel was designed. The AF4 channel (Wyatt Technology Europe) that was modified for this

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purpose had a frit inlet [37] in order to achieve hydrodynamic relaxation of the sample

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components, as the focusing process cannot be applied in continuous systems. Using the same

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terminology as Moon et al. [38], the region of the channel beneath the frit element is referred here

2D-AF4 channel design: Injection point and channel outlets

8

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as relaxation segment and the region from the frit element to the channel outlet as separation

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segment.

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The channel was formed combining two spacers (top spacer “A” and bottom spacer “B” in

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Fig. 2a) which differed only close to the sample inlet and had otherwise identical shapes. In the

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relaxation segment, the spacers had a narrow (2 mm) confined region after the sample inlet; this

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spacer geometry enabled the introduction of the sample as a narrow band along the breadth of

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the channel to avoid extra dispersion. The advantage of using two spacers instead of one is that

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the sample can be introduced closer to the membrane and, therefore, relaxation can be achieved

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at higher sample flow rates (~0.05 mL/min). Experiments conducted using only one spacer

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(spacer B) of thickness 250 or 350 µm, at cross-flow rates 1-3 mL/in and at outlet flow rate 0.8

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mL/min, showed that the hydrodynamic relaxation of the protein standards was incomplete

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(most of the sample eluted unfractionated in the void peak within five minutes after sample

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injection), unless very low sample flow rates (<0.01 mL/min) were used. Flow rates lower than

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0.01 mL/min are technically impractical and close to the limit of the HPLC pump, affecting

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precision. Furthermore, to increase sample loading at such low sample flow rates would require

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highly concentrated feed solutions, which could cause viscosity effects.

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In the separation segment, the spacers were modified on one side edge of the channel with

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saw tooth slots that were cut beneath the outlets No 1 - 4 to create “traps” for the solutes and to

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direct them towards the outlets. Similar saw tooth notches were used by Giddings et al. in the

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continuous steric - sedimentation FFF system [17]. In the absence of those features, the solutes

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would not exit the channel from the side outlet ports, since the ports are located at the depletion

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wall (opposite the accumulation wall) and withdraw the liquid that flows close to this region.

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Furthermore, the spacers were modified in the end of the separation segment to streamline the

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flow into two exits (outlets No 5 - 6).

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We define here the z-axis as the axis along the channel length (as it is commonly done in

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AF4) and 𝑧 = 0 the point where the separation segment begins. The migration distances z and the

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deflection angles that the solutes have when they exit from each outlet are given in Table 2. It is

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however important to note that next to the lateral selective displacement of the solutes, caused by

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the slanted grooves, the flow through outlets No 1 - 4 is causing an additional lateral bulk

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displacement. It can be estimated that when no cross-flow is applied, the unretained solutes will

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exit at outlet No 5, as their migration angle will be ~7° caused by this lateral bulk flow

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displacement of the outlets No 1 - 4. For the same reason, under the action of the cross-flow, the

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deflection angle of the solutes will be slightly larger compared to the one expected by only the

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selective displacement caused by the slanted grooves. Taking into consideration the deflection

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angle caused by the drift of the carrier liquid 𝜗𝑑, Eq. (1) is written as, 9

𝜗𝑖 =

𝑣𝑖, ⊥ 𝜋 + 𝜗𝑑 ― 𝑎𝑟𝑐𝑡𝑎𝑛 4 𝑣𝑖, ∥

(3)

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3.3

Spatial separation of proteins

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The spatial separation of proteins was demonstrated in the batch mode injecting 100 µL of a

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mixture of apoferritin and thyroglobulin in the 2D-AF4 system and analyzing the fractions

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collected from each outlet. The injected solution had a concentration of 1 mg/mL of each protein.

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The thickness of the spacers for this batch-mode experiment were 190 and 125 µm for spacers A

264

and B, respectively (315 µm total channel thickness). The total outlet flow was kept constant at 0.8

265

mL/min and different cross-flow rates were applied (0/1.2/2.0 mL/min). All other flow rates

266

were dependent on these values because the total inflow rate (Vs + Vf) equals to the total outflow

267

rate (Vc + Vout) and it is distributed 1/40 to Vs and 39/40 to Vf. Furthermore, the flow rate at the

268

outlets No 1-4 and at the outlets 5-6 was ~33% and ~8% of the total channel outlet flow (Vout)

269

respectively. The exact values of all flow rates that correspond to the different applied cross-flow

270

rates are tabulated in Table 3.

271

First, the experiment was carried out without applying cross-flow and fractions were

272

collected in the time interval 0 - 30 min after the sample injection. Next, cross-flow was applied

273

(1.2 or 2.0 mL/min) and fractions were collected from each outlet in the time intervals 0 – 5 min,

274

5 – 35 min and 35 – 40 min. The first fractions (0 – 5 min) were pooled together and analyzed to

275

make sure that the sample was not eluting in the void peak and the last fractions (35 - 40 min)

276

were also pooled and analyze to make sure that all the sample had been eluted in the previous

277

time interval. In these pooled fractions, all the peaks were below the limit of detection. All

278

fractions were analyzed with conventional AF4 as it is described in the Supplementary Material.

279

The fractogram of the mixture obtained after dilution with conventional AF4 is displayed

280

in Fig. 6a. It exhibited three peaks which are designated here as peak I, II and III and correspond

281

predominantly to the apoferritin monomer, thyroglobulin monomer and thyroglobulin dimer,

282

respectively. The results of the fractions collected at 5 – 35 min are shown in Fig.6b and Fig. 6c.

283

When no cross-flow was applied, the proteins exited the channel from the outlet No 5 (Fig. 6b) at

284

a composition similar to the initial mixture. This indicates that no spatial separation occurs in the

285

2D-AF4 channel when no cross-flow is applied. When a cross-flow rate of 1.2 mL/min was applied

286

the fractions collected at the outlets 4 and 5 had a different composition than the initial mixture.

287

The fraction from outlet 4 was richer in the larger components (peak II and III) and the fraction

288

from outlet 5 richer in the smaller component (peak I). When the cross-flow rate was increased

289

to 2.0 mL/min, the sample components exited the channel from earlier outlets (larger deflection

290

angle), as expected. 10

291

The total recoveries of the peaks I, II and III were estimated as 94%, 93% and 71%,

292

respectively, for a cross-flow rate of 1.2 mL/min, and 90%, 88%, 67%, respectively, for a cross-

293

flow rate of 2.0 mL/min. The run-to-run repeatability of the recoveries had an average RSD of 2%

294

and the membrane-to-membrane reproducibility an average RSD of 8%.

295 296

3.4

Spatial separation of nanoparticles

297

To demonstrate the separation of nanoparticles, 100 µL of a mixture of PS-latex standards was

298

injected in the 2D-AF4 channel. The injected solution contained 34 and 102 nm standards at

299

concentrations of 4.6 mg/mL and 1.2 mg/mL respectively. The thickness of the spacers of the 2D-

300

AF4 channel was 125 µm for both spacers A and B (total channel thickness 250 µm). The

301

performance of the system was investigated at various combinations of cross-flow and outlet flow

302

rates. Fractions were collected in the time intervals 0 - 3 min, 3 - 43 min and 43 – 48 min. The first

303

fractions (0 – 3 min) were pooled and analyzed to make sure that the sample did not elute in the

304

void time and the last fractions (43 - 48 min) were also pooled and analyzed to make sure that all

305

the sample amount had eluted in the previous fractions.

306

The fractogram of the (diluted) initial solution analyzed with conventional AF4 is shown

307

in Fig. 7a. The results of the fractions collected at 3 – 43 min are displayed in Fig. 7b and Fig. 7c.

308

As expected, higher cross-flow rates are causing larger deflection angles. Although higher cross-

309

flow rates and higher cross-flow to outlet flow ratios seem to improve somewhat resolution, the

310

recovery decreases. In particular, the total recovery of the 34 nm and 102 nm standards was

311

estimated 97% and 91% for cross-flow 0.5 mL/min, 91% and 76% for cross-flow 1 mL/min, and

312

90% and 62% for cross-flow 2 mL/min, respectively. For comparison, the experiments were

313

repeated with a flat (non-patterned) membrane where the sample components were eluted at the

314

outlet 5 and with slightly better (within 5%) recoveries.

315

Since the recovery decreases at higher cross-flow rates (because the sample components

316

have a smaller mean layer thickness and, therefore, are more prone to interact with the

317

membrane), the resolution should be improved in other ways. For instance, the resolution could

318

increase by optimizing groove structure as it was mentioned above or by increasing channel

319

length and width (with a proportional increase in cross-flow rate to maintain the mean layer

320

thickness of the sample components).

321

3.5

322

The performance of the 2D system was subsequently tested with an uninterrupted continuous

323

sample flow. A feed solution containing apoferritin and thyroglobulin at a concentration of 0.25

Continuous fractionation of proteins

11

324

mg/mL of each protein was introduced in the 2D-AF4 system under continuous operation; the

325

secondary pump was employed to provide the feed solution at a sample flow rate (𝑉𝑠) of 0.05

326

mL/min for 160 min. Consequently, in total 8 mL of the feed solution was fractionated containing

327

2 mg of each protein. The thickness of the spacers was 190 µm and 125 µm for the spacers A and

328

B respectively. The frit inlet flow rate (𝑉𝑓) was set at 2.8 mL/min and the cross-flow rate at 2

329

mL/min. Fractions from each outlet were collected every 30 minutes (after discarding the volume

330

collected in the first 40 minutes of operation to make sure that a steady state was reached) and

331

each fraction was analyzed with conventional AF4.

332

The overlaid fractograms are displayed in Figure 8. Although the fractionation is obviously

333

not complete, it is clearly shown that the solution collected at a smaller deflection angle (outlet

334

No. 5) is strongly enriched in the low MW protein, while at a larger deflection angle (outlet No 3)

335

the larger proteins are collected. The total recoveries of the sample components that correspond

336

to the peaks I, II and III are estimated as 92%, 91% and 77%, respectively, which is similar (within

337

5%) to the recovery estimated in the batch mode. We conclude that a continuous operation is

338

possible as the composition of the solution in each outlet was different for all the fractions

339

collected in the different time intervals even after several hours of operation. However, in the

340

course of time, there is an apparent loss in resolution. Cleaning of the membrane with the carrier

341

solution by applying only channel flow for 30 min, restored partly the performance.

342

The system was stressed further increasing the protein concentration of the feed solution

343

four-fold and the operation time up to 5 hours. When the membrane was subsequently removed

344

and inspected, signs of membrane fouling (discoloration of the membrane and loss of its shiny

345

appearance) were observed at the point where the relaxation segment ends. This finding indicates

346

that fouling takes place there which is reasonable as at this area the sample reaches the maximum

347

concentration being compressed close to the membrane (with a mean layer thickness of few

348

micrometers) and confined in an area of 2 mm width.

349

Membrane fouling would be a bottleneck in the utility of this continuous 2D-AF4 system

350

but it could be prevented by several means. First, to reduce the concentration close to the

351

membrane, larger channels could be used where the confined area in which the sample is

352

introduced is wider. Secondly, lower cross-flow rate could be applied to decrease concentration

353

close to the membrane. However, in this case, in order to maintain resolution, the spacer thickness

354

and the groove height should also be increased proportionally. Thirdly, introducing periodic

355

washing steps by interrupting the continuous fractionation at regular time intervals could prevent

356

the accumulation of the sample components in the areas prone to fouling. Lastly, a small amount

357

of very large aggregates present in the sample, which is strongly retained by the grooves, might

12

358

be causing the fouling. In this case, sample filtration prior fractionation could improve the

359

performance.

360

Furthermore, membrane fouling does not only reduce separation efficiency but it also

361

increases the risk of carry-over. It is easy to replace the membrane in the channel and probably

362

less time-consuming than cleaning a fouled membrane. Therefore, microstructured membranes

363

should be disposable and this would only be possible if they are low-cost. Although low-fouling

364

UF membranes (typically used in AF4 and for other ultrafiltration purposes) are inexpensive, the

365

hot embossing step required to create the grooved pattern could increase substantially their cost.

366

High throughput hot embossing technologies, such as continuous roll-to-roll hot embossing, could

367

offer affordable microstructured membranes for commercial use.

368 369

4 Conclusion

370

A continuous 2D-AF4 system has been developed using microstructured ultrafiltration

371

membranes with slanted grooves on their surface. Τhe continuous separation was demonstrated

372

with a mixture of large proteins (apoferritin 443 kDa and thyroglobulin 669 kDa), and PS latex

373

nanoparticles (34 and 102 nm). This is the first continuous field-flow fractionation system that

374

can fractionate a feed solution of macromolecules or nanoparticles in aqueous solvents based on

375

their hydrodynamic size. The device could be scaled up for (semi-)preparative applications or

376

scaled down and integrated into lab-on-a-chip devices. Since the second dimension is generated

377

passively from the slanted grooves, the instrumentation required is very simple; the only

378

components that are indispensable are two pumps (one for the main flow and one for the sample

379

flow stream) and a flow controller to regulate the cross-flow.

380

It was shown that higher cross-flow rates may improve the resolution but they also

381

decrease recovery and, therefore, alternative solutions are required to achieve better resolution

382

e.g. by optimizing the groove shape/dimensions or by increasing the channel dimensions. Future

383

research should be focused on the fabrication of larger and low-cost microstructured membranes

384

with grooves that have sharper edges and with lower MWCO (that are able to retain smaller

385

proteins such as antibodies). The membrane fouling observed during the continuous fractionation

386

could be prevented by operating at low cross-flow rates (adjusting channel thickness and the

387

height of the grooves to maintain resolution) and by increasing the breadth of the channel,

388

particularly in the confined region where the sample is introduced. Finally, the fouling might be

389

related to a small amount of very large aggregates that are strongly retained by the grooves.

390

Therefore, sample filtration/centrifugation prior fractionation or application of periodic washing

391

steps during operation could improve the performance. 13

392

The concept of an accumulation wall with slanted grooves that we demonstrate here for

393

the AF4 system is versatile; it could be applied in any other FFF system (thermal, magnetic, etc.)

394

to transform it into a continuous 2D device. Regardless of the applied field, the component which

395

interacts stronger with it (i.e., which is more retained) would exhibit a larger deflection angle

396

resulting to a continuous fractionation. In fact, the continuous system with fabricated slanted

397

grooves for the fractionation of micron-sized microparticles developed by Bernate et al. [32] could

398

be considered as a continuous gravitational 2D-FFF system.

399

Acknowledgements

400

This work was part of the research program SmartSep with project number 11400 which was

401

financed by the Netherlands Organization for Scientific Research (NWO). The authors are grateful

402

to Ü. Bade Kavurt and prof. dr. Dimitrios Stamatialis (University of Twente) for the fabrication of

403

the microstructured membranes and the SEM images. Wyatt Technology Europe is acknowledged

404

for providing technical expertise and Udo van Hes (University of Amsterdam) for his help on the

405

construction of the 2D-AF4 channel.

14

406

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18

515

Table 1. Effect of the microstructured membranes on the retention time of the apoferritin

516

monomer (𝑡𝑅,1) and dimer (𝑡𝑅,2), on their selectivity 𝑎 and on the plate height of the monomer 𝐻. Membrane

𝑡𝑅,1 (min)

𝑡𝑅,2 (min)

𝑎

𝐻 (mm)

Flat membrane

7.0 ± 0.2

9.6 ± 0.4

1.37 ± 0.01

0.35 ± 0.02

MS membrane (parallel grooves)

9.6 ± 0.5

13.3 ± 0.8

1.38 ± 0.00

0.48 ± 0.03

MS membrane (perpendicular grooves)

11.1 ± 0.6

16.9 ± 0.8

1.51 ± 0.01 0.58 ± 0.03

517 518

19

519

Table 2. Migration distance (along the z-axis) and deflection angle that the solutes have when

520

they exit from each outlet Migration distance Deflection angle 𝑧 (cm)

𝜃

Outlet 1

0 - 1.8

> 27°

Outlet 2

1.8 - 3.3

27° - 15°

Outlet 3

3.3 - 4.8

15° - 11°

Outlet 4

4.8 - 6.3

11° - 8°

Outlet 5

6.3 - 10.0

< 8°

521

20

523

Table 3. Cross-flow rate (𝑉𝑐) and total channel outlet flow rate (𝑉𝑜𝑢𝑡) used in batch mode 2D-AF4

524

(Tables 6 and 7) to separate proteins or nanoparticles, and the corresponding frit inlet flow rate (

525

―6 𝑉𝑓), sample flow rate (𝑉𝑠), and flow rate in each outlet (𝑉1𝑜𝑢𝑡 ). All values are given in mL/min.

𝑽𝒄

𝑽𝒐𝒖𝒕

𝑉𝑓

𝑉𝑠

―4 𝑉1𝑜𝑢𝑡

𝑉5,6 𝑜𝑢𝑡

Spatial separation of proteins 0.00

0.80

0.78

0.02

0.07

0.27

1.20

0.80

1.95

0.05

0.07

0.27

2.00

0.80

2.73

0.07

0.07

0.27

Spatial separation of nanoparticles 0.50

0.50

0.97

0.03

0.04

0.17

1.00

1.00

1.95

0.05

0.08

0.33

2.00

2.00

3.90

0.10

0.17

0.66

2.00

1.00

2.92

0.08

0.08

0.33

3.00

1.50

4.39

0.11

0.13

0.50

526

21

527 528

Figure 1. Continuous separation over an accumulation wall with slanted grooves; larger solutes

529

are more retained by the grooves and exhibit a larger deflection angle.

22

530 531

Figure 2. a) Illustration of the spacer A showing the position of the frit element placed above it, of

532

the spacer B showing the separation of the sample components over the MS membrane placed

533

below it, and of the channel cross section. The colored dashed lines indicate the particle

534

trajectories. The channel thickness and the dimensions of the grooves are exaggerated for visual

535

purposes. b) Photograph of the 2D-AF4 channel displaying the sample inlet (𝑉𝑠), the frit inlet (𝑉𝑓),

536

and the outlets No 1 - 6. c) Assembly of the 2D-AF4 channel.

23

537 538

Figure 3. SEM images of the MS membranes: a) Top and b) cross-sectional view.

24

539 540

Figure 4. Overlaid fractograms of apoferritin obtained with (i) flat membranes, (ii) MS

541

membranes with the grooves parallel to the channel flow and (ii) MS membranes with grooves

542

perpendicular to the channel flow. AF4 conditions: cross-flow rate 1.5 mL/min, outlet flow rate

543

0.8 mL/min and injected mass 5 µg.

25

544 545

Figure 5. The system with slanted grooves may be considered two-dimensional: one dimension

546

is along the grooves ( ∥ ) and the other is across the grooves ( ⊥ ); for well-retained solutes the

547

selectivity is different in the two dimensions which results in their spatial separation.

26

548 549

Figure 6. Spatial separation in the 2D-AF4 system of a solution containing apoferritin and

550

thyroglobulin. The fractograms were obtained by analyzing the samples (initial mixture and

551

fractions) with conventional AF4 (with a cross-flow rate of 1.5 mL/min and an outlet flow rate of

552

0.8 mL/min). a) Fractogram of the initial mixture, b) fractograms of the fractions in every outlet

553

of the 2D-AF4 system acquired at different cross-flow rates (0, 1.2, and 2.0 mL/min) and c)

554

recovery of each component in each outlet. The flow rates mentioned in the figure correspond to

555

the cross-flow rates applied during the 2D-AF4 fractionation where the fractions were collected.

27

556 557

Figure 7. Spatial separation in the 2D-AF4 system of a solution containing PS-latex nanoparticles

558

with diameters of 34 and 102 nm. The fractograms were obtained by analyzing the samples (initial

559

mixture and fractions) with conventional AF4 (with a cross-flow rate of 0.5 mL/min and an outlet

560

flow rate of 1.0 mL/min). a) Fractogram of the initial mixture, b) fractograms of the fractions in

561

every outlet acquired under different cross-flow and outlet flow rates and c) recovery of each

562

component in each fraction. The flow rates mentioned in the figure correspond to the flow rates

563

applied during the 2D-AF4 fractionation where the fractions were collected.

28

564 565

Figure 8 Continuous fractionation of a mixture of proteins: Overlaid fractograms of the fractions

566

collected in different time intervals from the outlets 3, 4 and 5 under continuous operation of the

567

2D-AF4 system. The fractograms are normalized to the highest peak for visual comparison.

568 569

29

570

Graphical abstract

571

572

30