Control of nucleocytoplasmic transport

Control of nucleocytoplasmic transport

Control of nucleocytoplasmic transport Laura I. Davis Howard Hughes Medical Institute, Duke University Medical Center, Durham, North C...

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.

Control

of nucleocytoplasmic

transport

Laura I. Davis Howard

Hughes

Medical

Institute,

Duke

University

Medical

Center,

Durham,

North

Carolina,

USA

The movement of macromolecules between the nucleus and cytoplasm is tightly controlled. In the past few years it has become increasingly apparent that nuclear traffic is regulated not only by recognition of specific signals on proteins and RNAs, but also by cellular factors that modulate the efficacy with which these signals are recognized.

Current

Opinion

in Cell Biology

Introduction The intraceUular membrane systems of eukaryotic cells act as barriers that divide the cell into functional compartments. How these compartments are established and maintained is an area of intense study in cell biology. While our understanding of the processes by which proteins are transported into the endoplasmic reticulum and mitochondria has grown rapidly in the past several years, we still know relatively little about the control of macromolecular movement between the nucleus and cytoplasm. Recently it has become clear, however, that transport of proteins, such as transcription factors, into the nucleus is not a constitutive process, but can change in response to external stimuli and cell cycle variations. Thus, nucleocytoplasmic transport may be an important regulatory point in the control of gene expression. This review will focus on recent contributions to our understanding of the signals required for both RNA and protein transport, and the cellular machinery that controls the transport process. Recent reviews [ 1,2] provide more extensive coverage of this subject.

RNA transport Nuclear and cytoplasmic RNA populations are very different. Unprocessed mRNAs, for example, are generally not found in the cytoplasm, but remain nuclear until processing is complete. Considerable debate has arisen as to whether these distinct populations reflect a specific transport step that recognizes only mature RNA, or whether unprocessed RNA is tethered within the nuclear interior and released upon processing to diffuse towards the nuclear pore complex. In the latter case transport can be viewed as a constitutive, rather nonspecific, step in the pathway. While this question is still unresolved, there is growing support for a model that lies somewhere in between these two extremes.

1992, 4:424429

A relation between splicing and export was established through analysis of the export of mRNAs containing splice site mutations. Mutant mRNAs that were incapable of forming a complex with small nuclear ribonucleoprotein (snRNPs) that committed them to the splicing pathway were exported to the cytoplasm as unspliced transcripts, whereas mutants that formed a commitment complex but were incapable of being further processed were retained within the nucleus [ 31. These results suggest that binding to the splicing machinery sequesters pre-mRNA within the nucleus until splicing is complete. Analysis of the fate of inefficiently spliced RNAs further suggests that competition between export from the nucleus and formation of a splicing complex may govem the proportion of unspliced RNA in the cytoplasm [4-T]. Changes in this ratio could be achieved either by increasing the rate of export of unprocessed RNA or by decreasing the rate of formation of the commitment complex. The viral regulatory protein Rev, which causes cytoplasmic accumulation of unspliced and singly spliced viral RNA [5,6]. could act via either mechanism (reviewed in [8]). The model suggests that unspliced RN& are tethered within the nucleus but does not preclude an active and specific transport process downstream. The splicing and transport pathways may be linked, so that processed RNAs are fed into a mediated transport system. Several recent studies support this model. Eckner et nf. [9*] have looked at histone mRNA, processed artificially at its 3’ end by a cis-acting riboqme instead of through the normal snRNP-mediated pathway. The rate of transport of this message into the cytoplasm was found to be significantly decreased, suggesting that transit through the normal processing pathway is required for efficient export. Also, in situ hybridization experiments have shown that newly synthesized messages are found in discrete tracks leading from the interior of the nucleus to the nuclear envelope [ lO**], contradicting the idea that RNAs are free to diffuse as soon as they are processed. Evidence that a specific signal is required for export comes from studies in which the monomethyl cap

Abbreviations snRNP-small 424

nuclear

ribonucleoprotein;

@ Current

NLGnuclear

Biology

localization

signal;

Ltd ISSN 0955-0674

snRNA-small

nuclear

RNA.

Control

of nucleocytoplasmic

transport

Davis

structure of mutant pre-mRNAs was substituted with a trimethyl cap [ 111. Upon injection into oocyte nuclei, mRNAs that had been mutated so as not to enter the splicing pathway were exported to the cytoplasm, provided they contained a normal (monomethyl) cap; if they had a trimethyl cap they were retained in the nucleus. This result strongly suggests that cap structure affects the ability of free mRNAs to leave the nucleus and may provide the actual signal for mediated export.

tor. The recent observation that SV40 T antigen bearing a mutant NLS can be properly localized by expression of heat-shock protein 70 [17-l further supports this model by implying that heat-shock proteins can prevent misfolding of mutant NJ..%, and could be required to stabilize some wild-type proteins in a state that exposes the NLS.

A role for the cap structure in transport of small nuclear RNAs (snRNAs) has also been demonstrated [ 11,12*,13]. Ul snRNA export requires the correct cap, and can be inhibited by microinjecting cap analogues [ 11 I. This suggests that recognition of the cap by a saturable receptor is required for snRNA export. Import of the assembled Ul snRNP complex also requires the correct cap structure (in this case the hypermethylated cap modified in the cytoplasm), but a second signal provided by the common Sm protein is also necessary [ 131.

Modulation

Two different approaches suggest that microinjected U6 and Ul RNPs are imported via different pathways. Michaud and Goldfarb [14-l showed that ~6 import, which is cap-independent and may require binding to a protein subunit, could be inhibited by co-injecting saturating concentrations of nuclear protein, whereas Ul import was unaffected. Similarly, Fischer et al. [ 12.1 showed that ~6 but not Ul import could be inhibited by wheat germ agglutinin, a lectin that binds to nuclear pore complex proteins and inhibits protein import. These results suggest that Ul snRNPs use a novel pathway in which cap structure plays an important role, whereas ~6 enters the nucleus via the same pathway as nuclear proteins (discussed below).

The signals import

required

for nuclear

protein

Although the pore complex is permeable to macromolecules as large as 40 k~, the observation that histone Hl enters the nucleus through a receptor-mediated transport pathway, rather than by simple diffusion [ 151, suggests that import of both large and small nuclear proteins is a mediated process. Import is dependent on the presence of a short basic tract of amino acids, referred to as the nuclear localization signal (NIS). The consensus sequence for the NLS is quite loose, and was originally defined (largely through the analysis of viral nucleoproteins) as a tract of approximately four basic amino acids often flanked by a proline residue (reviewed in [ 11). The nucleoplasmin NLS, however, consists of two interdependent domains, a run of four lysines as well as two basic residues that are found 10 amino acids upstream [ l6*]. A search of a protein database showed that approximately half of all sequenced nuclear proteins have a similar motif. The observation that the NIS can be composed of non-contiguous regions adds to existing evidence that in some cases the conformation of the region around the NLS is crucial for recognition by the import recep-

of nuclear

protein

transport

Transport of numerous transcriptional activators can be regulated by cytoplasmic factors that mask the NLS and prevent its recognition by the import apparatus (see [2] for review). Masking can be achieved either by the formation of inhibitory complexes with other proteins, or by post-translational modification (usually phosphorylation) of the NLS itself. Transcription factors sequestered in this manner are thought to be substrates for mediators of various signal transduction pathways, which presumably ‘release’ them by reversing the inhibitory modifications [ 18°,19,20*,21,22-o,23,24*,25,26]. This ensures a rapid transcriptional response to various extracellular signals Recent work on the multisubunit transcriptional activator, Nl-AT, illustrates this. NF-AT is required for early T-cell activation in response to external stimulation. It is a specific target of the immunosuppressive drugs cyclosporin and FK506, which inhibit NF-AT-dependent transcription in uiuo. The use of a stimulation-dependent in oitro transcription assay showed that transcription could be restored to nuclear extracts from stimulated, drug-treated cells by adding cytosol from unstimulated cells [20*]. This suggested that translocation of an existing NF-AT component from cytoplasm to nucleus occurs in response to extracellular stimulation, and that this step is blocked by cyclosporin. Further results provided indirect evidence that activation of NF-AT translocation occurs via a pathway requiring calcium mobilization. A speculative model would be that calcineurin, a phosphatase that is inactivated by cyclosponn [ 27,281 ,is required to dephosphorylate the cytoplasmic subunit of NF-AT and allow its translocation to the nucleus. Nuclear localization can also be regulated during the cell cycle. This is exemplified by the behavior of the yeast transcriptional factor WI5 [22-l, which moves from the cytoplasm to the nucleus during Gr. Three serine residues within and around the NLS are phosphoty lated in a cell-cycle-dependent fashion. The degree of phosphotylation is inversely correlated with the level of nuclear SWIS, and mutation of the serines to alanine caused constitutive nuclear entry, arguing strongly that dephospholyiation allows nuclear translocation. Interestingly, the signal for cell cycle-dependent nuclear entry resides within a stretch of 41 amino acids that includes the NIS, as these residues were sufficient to confer cell cycle-specific nuclear localization when fused to a reporter protein. Thus, it appears that phosphotylation within and around the NIS directly masks the signal from the import apparatus, rather than affecting association with other proteins.

425

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stitute for cytoplasmic extracts. Thus, these polypeptides appear to be necessary but not sufficient for import. Two yeast NLS-binding proteins have also been characterized [35*,36*] and the gene for one of them (NSRI) has been cloned [35*]. NSRl has RNA recognition motifs and is probably localized to the nucleolus. Nucleolar localization has also been observed for a mammalian NLS-binding protein [37]. It is somewhat difficult to reconcile intranuclear localization with a role in transport of proteins from the cytoplasm into the nucleus, and it may be that a number of nucleolar proteins simply bind non-specifically to NISs. Alternatively, an NLS receptor could shuttle between the nucleus and cytoplasm - as has already been demonstrated for the nucleolar proteins nucleolin and B23 [ 311 - and simply reside in the nucleolus most of the time, perhaps because the majority of its substrates are nucleolar proteins. Mutational analysis of the yeast NE-binding proteins should resolve this question.

of nucleocytoplasmic

Davis

transport

Conclusions The available evidence suggests that control of nucleocytoplasmic transport is exerted both by the transport apparatus, which recognizes only a specific subset of cellular proteins and RNAS, and by cytoplasmic and nuclear factors that affect the availability of these macromolecules for recognition. As yet there is no evidence that the ability of the nuclear pore complex to catalyze transport can be directly regulated, but this may simply reflect our lack of knowledge concerning this organelle. What is obvious is that the cell has evolved numerous ways to control what reaches the pore complex. Perhaps of most interest is that mediators emanating from several different signal transduction pathways have now been shown to control the import, and thus the activity, of specific transcription factors. Thus, nucleocytoplasmic transport may provide a new link between early events in signal transduction and the control of gene expression.

Acknowledgements The nuclear

pore complex

Nuclear pore complexes form large, proteinaceous channels through the nuclear envelope (Fig. l), and are assumed to provide the only avenue for transport between nucleus and cytoplasm. Although the pore complex has an estimated mass of 108 kD [38], few of its constituents have been identified. The nuclear pore proteins that serve as binding sites for nuclear import are unknown. Akey and Goldfarb [39] have shown that nuclear proteins dock at a region of the pore complex called the central transporter, and that a group of related glycoproteins, the nucleoporins (reviewed in [2] ), are located within this structure. Immunodepletion of the nucleoporins from extracts prior to in r&-o reconstitution of nuclei prevents docking at the pore complex [40*,41], suggesting that one or more of the nucleoporins either serves as the receptor (directly or through cytoplasmic NE-binding proteins) or is stably associated with it. Two genes that encode yeast nucleoporin homologues NUPl [42] and NSPZ [43] have been identified. Temperature-sensitive mutants of NSPl show defects in protein import at the non-permissive temperzcure [43], providing in zdzjoevidence that these proteins play a role in transport. The mechanism by which macromolecules are translocated through the pore complex is not understood. It has been suggested that this step, which requires ATP, involves dilation of an iris-like structure in the central transporter in response to docking of nuclear proteins [ 441, but this model is speculative. No ATPase has been definitively linked to transport, but the presence of mycsin in the nuclear pore complex has been suggested by immunocytochemistry [45]. Further characterization of the constituents of the nuclear pore complex should provide the answers to many of these questions.

The author would like to thank D Miller, T M&se, Goldfarb for critical reading of the manuscript.

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Ll Davis. Howard Hughes Medical Center, Durham,

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3646 Duke USA

University

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