388
Cross-clade T cell recognition of HIV.1 Frances Gotch Despite
considerable
infection,
successful
effective
vaccine.
lymphocyte
(subtypes)
Current
responses
such vaccination. lymphocytes
advances global
in antiviral
intervention evidence
suggests
will be an important
Recent
evidence
raised against
may be a correlation
an
that cytotoxic
T
of
that cytotoxic
from different
extensively
for HIV vaccine
for HIV
component
suggests
viral antigens
of HIV.1 can cross-react
have major implications
therapy
will require
T
clades
and such data
design.
Address Department of immunology, Chelsea and Westminster Hospital, 369 Fulham Road, London SW1 0 9NH, UK Current Opinion in Immunology
1998, 10:388-392
http://biomednet.com/elecref/0952791501000388 0 Current Biology Publications ISSN 0952-7915 Abbreviations CTL cytotoxic T lymphocyte recombinant glycoprotein r9p
Introduction In December 1997 it was reported that there had been an estimated 5.8 million new infections with HIV during that year, bringing the total number of people living with HIV world-wide to some 30 million [l]. The greatest growth in AIDS cases is in the densely populated developing countries of south-east Asia, India and sub-Saharan Africa [Z]. Whereas recent advances in antiretroviral therapy provide great optimism, issues related to cost and availability mean that such interventions are unlikely to have a major impact on the global epidemic. The need for an effective vaccine is paramount. The extraordinary genetic diversity of HIV.1 is a major obstacle to overcome if an effective prophylactic vaccine which can be used world-wide is to be developed. Based sequence analysis, eight sequence on envelope subtypes - clades - of HIV.1 (A to J) and one outlier group (0) of HIV.1 have been identified as distinct phylogenetic lineages in evolutionary trees [3]. In no country of the world is a single clade of virus circulating. While correlates of immune protection against HIV.1 are not yet completely defined, it is widely held that a broadly cross-reactive immune response, capable of recognising multiple HIV. 1 clades, must be a desirable feature of a vaccine-induced response. Most vaccines currently in development are based on B-clade immunogens and for these to be of global use it will be necessary for them to induce cross-reactive responses. Neutralising antibodies are thought to be important in blocking infection of cells by free virus particles and there
between
antibodies and protection models [4,5]. To date, most only been able to generate ing homologous laboratory
the presence
of neutralising
from infection in some animal candidate HIV.1 vaccines have antibodies capable of neutralisstrains of HIV.1 [6,7], although
there has been a recent report of neutralisation B primary isolate by sera from HIV.l-uninfected of a recombinant glycoprotein containing canarypox vaccine; with rgp1’20sF_z [8].
(rgp)lZO,t, both groups
Cellular
that
immune
responses
recognise
of a clade recipients or rgp160,tNwere boosted
conserved
epitopes within the virus’ structural and regulatory elements might provide much broader immunologic specificities than humoral responses recognising variable envelope proteins. T-helper function is necessary for both memory antibody responses and clonal expansion of specific cytotoxic T lymphocytes (CTLs). Cross-reactive T-cell proliferative responses to V3 peptides (from a variable region of HIV.1 envelope protein) corresponding to different geographical HIV.1 isolates have been observed in HIV.l-infected individuals [9]. CTLs have been shown to play a major role in effective virus-specific host immune responses. Data from studies of cytomegalovirus, Epstein-Barr virus, HIV and simian immunodeficiency virus suggest a protective role for anti-viral CTLs [lO,ll]. HIV-specific CTL recognition of short viral peptide fragments from HIV - bound to MHC class I molecules on an infected cell - can result in lysis of the infected cell, activation of the T cell and the release of cytokines. Although some CTL epitopes have been described within the envelope of HIV.1, such epitopes are mainly located in the core (e.g. gag and pol) and regulatory (e.g. nef) proteins, which are more conserved than envelope proteins among clades [12]. Correlations have been made between the rapid decrease in plasma HIV viraemia following primary infection with HIV and the emergence of high levels of virus-specific HLA-restricted CTLs [ 131. A negative correlation has been shown between HIV&specific CTL activity and HIV.2 viral load [14], while in HIV.1 infection high levels of CTLs have been associated with nonprogression to disease [15]. HIV-specific CTL activity has been observed in HIV- babies born to seropositive mothers [16] and in highly exposed seronegative adults [17]. In animal models it has been shown that the precursor frequency of vaccine-induced CTLs negatively correlates with viral load following challenge [18]. Clinical trials of candidate HIV.1 vaccines in the past five years have been for the most part based on envelope-subunit vaccines. These trials have confirmed that such vaccines, although capable of inducing high titre but noncross-reactive humoral activities, were inefficient at
Cross-clade T cell recognition of HIV.1 Gotch
eliciting
CD8+ CTLs
[19,20]. Vaccines
using live, recombi-
nant poxvirus constructs, DNA immunisation or attenuated live virus are more potent CTL imunogens, particularly in conjunction with a ‘prime-boost’ strategy involving an initial immunisation using the vector followed by a subunit boost [Zl]. Such vaccines are mostly based on clade-B immunogens which predominate in Europe and the ITSA. If such potentially effective vaccines have to be reformulated for different clades, delivery of promising interventions to the neediest
populations
could
cytotoxic T lymphocytes in HIV
Four recent studies have assessed the ability of HIV.l-specific cytotoxic T cells in HIV.l-infected individuals to recognise viral sequences from clades of virus other than those with which they are infected. The extent of crossreactivity within such individuals, each infected with a characterised virus, might reflect the kind of cross-reactive immune responses inducible by a monovalent vaccine.
be delayed.
It had been widely assumed’that there would be limited cross-reactivity for CTL responses amongst different clades of HIV.1, such that different vaccines might be needed for different geographical areas; however several recent publications have examined in more detail the spectra of crossreactivity of CTLs between HIV.l-infected individuals
Cross-reactive infection
389
the different clades of HI\<1 in or in vaccinated volunteers and
it now seems that CTLs raised against viral antigens from different clades can cross-react extensively. Such data has major implications for HIV vaccine design.
Vaccine studies Early vaccine studies in the murine and nonhuman primate systems demonstrated that single immunisations with DNA constructs encoding HIV.1 gp16O membranebound glycoproteins may induce cross-clade cytotoxic T cell responses specific for the envelope [ZZ]. Recent vaccine studies in humans have investigated immune responses to canarypox-clade-B based ALVAC/HI\‘. 1 vaccines containing full length gp160,,,; or gp120 plus the transmembrane portion of gp41, full length gag and protease [U”]. The specificity of vaccine-induced CTLs against autologous CD4+ lymphoblast target cells that were infected with representative primary HI\‘.1 isolates from clade A-F was tested in a small subset of volunteers using AL\‘AC vaccines. One out of two volunteers - immunised Lvith ALVACIHIV.1 gp16O showed a broad pattern of CTL activity, lysing target cells infected with cladc A-F isolates. The CTL reactivvolunteers - immunised ities from two with ALVAC/HI\:.l gp120 plus gp41, gag and protease recognised select populations of primary HIV.l-infected target cells; one volunteer had CTLs recognising A-, B-, C- and E-isolates whereas the other had CTLs recognising A-, B- and F-clade isolates. It was observed that vaccine-induced cross-reactive CTL acti\,ity could be measured up to 20 weeks post vaccination. Thus both the gplhO-based canarypox immunogen and the one containing additional gag/protease genes could elicit CTL reactivities capable of recognising CD4+ cells infected with genetically diverse HIV.1 primary isolates. These findings suggest that vaccine-induced CTLs are not constrained by existing barriers that have prevented the exploitation of neutralising antibodies in vaccine development - namely their inability to neutralise field isolates on their natural target cells and to effectively cross-neutralise diverse strains of HIV.1 [7].
Betts CTL
et N/. [24”] examined activity in the peripheral
cross-clade HIV.l-specific blood of Zambian individ-
uals infected restimulated
with clade-C HIL’.l. CTLs using autologous B-cell
transformed ITV/psoralen
by and
nants
containing
Epstein-Barr infected with clade-B
virus, vaccinia
HIV.1 (strain
were lines
selectively that were
inactivated by virus recombiIIIB)
gag/pol/env
(vvCPE) or nef (vvnef). Such a restimulation protocol may not reflect the normal it/ Gzo response, as only crossreactive CTLs are likely to be restimulated and CTLs specific for the C clade will not be apparent. Target cells were autologous B cell lines infected with recombinant vaccinia viruses conaining the same clade B as was used for restimulation. Six of the eight persons infected by clade C demonstrated highly significant levels of HIV.lspecific CTI, activit) ro HI\‘.1 clade B vvGPE but only one out of the three that were tested demonstrated specific CTL activity specific for HI\‘.1 nef, which was low anyway. Further analysis of the eight persons revealed that two individuals had CTLs which recognised B-clade gag, pol and env; one individual had CTLs only recognising gag; and one had CTLs recognising only pal. Results thus indicate that cross-clade CTL activity is not limited to a single HIV protein. Examination of the Los Alamos National Laboratory database reveals many conserved CTL epitopes between Bclade and C-clade isolates of HIV.l. Sixteen gag epitopes, nine pol epitopes and seven envelope epitopes are seen to be fully conserved between B- and C-clade isolates. This is likely to be an underestimate of functional conservation since some CTL epitopes are tolerant of substitutions [2.5,26]. The completely conserved epitopes bind to a variety of HLA class I alleles [27]. A second study [Z-3”] examined the ability of nine wellcharacterised CTL clones - isolated from individuals infected with B-clade virus, that were specific for HIV1 gag, reverse transcriptase or env - to recognise analogous A-, C-, D- and E-clade viral sequences. Clones selected had specific HLA-restricting alleles representative of HLA distributions in populations where vaccines may be of most use. All CTL clones were cross-reactive with at least one non-B-clade strain, in some cases due to sequence conservation and in others to CTL recognition of a variant peptide. CJse of target cells, infected with a vaccinia virus recombinant expressing A-clade envelope, established that cross-clade recognition persists with
390
HIV
intracellular processing and presentation of antigens. This study also examined polyclonal HIV.l-specific CTL responses in 14 individuals infected with A-, C- or Gclade virus, all of whom demonstrated cross-reactivity
In the fourth study [30”], recognition of non-clade-B peptides (based on an 8-mer peptide in p17 of gag) by a CTL clone restricted to HLA-BB, which was derived from a patient infected with clade B and was restimulated with a
with clade-B nef proteins. accomplished
peptide based on the evaluated. All peptides
with
viral constructs Restimulation using either
recombinant
vaccinia
expressing of enriched autologous viruses
gag, env, pol and CDX+ cells was B cells, infected
expressing
antigens
from HIV.1 B clade and inactivated with UV/psoralen; or using autologous irradiated populations with expanded CD4+ cells, that were superinfected with HIV.1 IIIB. Both restimulation protocols would be expected the elicitation of cross-reactive CTL responses.
to favour
Although epitope conservation may be one explanation of the cross-clade recognition seen in this study it was shown that single, or even double, amino-acid substitutions frequently did not abrogate recognition. Analyses performed indicated that the proteins most likely to stimulate crossclade immune responses were the capsid protein gag ~24 and reverse transcriptase - the most conserved proteins. A third study [29] examined the cross-reactivity of CTLs induced in eight patients infected with clade-A virus and seven patients infected with the B clade. CTLs were restimulated using autologous virus and target cells were infected with recombinant vaccinia viruses expressing env, gag, pol and nef from A- or B-clades. CTLs from all individuals cross-reacted extensively with proteins from the heterologous clade. Epitopes conserved between the viruses of the A- and B-clades were especially frequent in gag ~24, gag ~18, integrase and the central region of nef.
B-clade consensus sequence, was tested for recognition had one or
two amino-acid changes compared with the index peptide. None of the variant peptides was recognised. &‘hile this degree of specificity has been described for many other CTL clones and lines, it was not reported by Cao et ~1. [28”] although they did not evaluate CTL clones specific for HLA-B8 in their study. Patients with a particular HLA class I type (such as HLA-B8) may make CTL responses which are specific for variable regions of the virus [31] and such individuals might be expected to show less cross-reactivity. Such a lack of cross-reactivity or specificity may give a misleading impression and the polyclonal responses that a patient actually makes itzaiw to a whole antigen or series of antigens may be far more heterogeneous.
This study [30”] also evaluated cross-clade recognition of p5.S antigen by CTLs in persons infected with diverse clades of HIV.l. Experiments were designed to evaluate whether individuals - infected with A-, B-, C-. or D-clade virus-had CTLs (in this case inducible by autologous virus) that were capable of recognising and killing autologous target cells that were infected with recombinant vaccinia viruses expressing the gag p% protein from A-, B-. Cand D-clade HI\‘.l. Again extensive cross-reactivity in CTL responses was demonstrated in the majority of individuals between four of the major clades of HI\‘.l; these data are summarised in Table 1.
Table 1 The majority of HIV.1 infected patients show cross-reactivity of the clade with which they are infected. *Recognition
by CTLs of autologous
to HIV.1 core protein ~55 gag from A-, B-, C- and D-clades, regardless
target
cells infected
with recombinant
vaccinia
viruses expressing:
Clade of HIV.1 with which
Influenza
HIV.2
HIV.1
HIV.1
HIV.1
CTL donor is infected
PB2 or NP
~55 gag
clade A
clade B
clade C
HIV.1 clade D
~55 gag
~55 gag
~55 gag
p55 gag
A
_t
++* ++
++ ++
++
++
4-f
++
++ ++ ++
++ +
+§ +
++ +
++ ++ ++ ++ ++ ++ ++ ++ ++ ++
++
++
++
A A A/C A/C D AlClD B B B B B B B
_
+
ND ND ND
NK *Each set of results represents lytic CTL responses vaccinia construct. Effector : target ratio was 5O:l. known; NP, nucleoprotein; PB2, polymerase-binding
Mock infection
_
+ ++ ++ N”D ND ND +
++ ++ ++ ++ ++ ++ ++ ++ +
++
++ ++ ++ ++ +
of one individual. Lysis is compared to that of the same target cell infected with an irrelevant no specific lysis or < 10% lysis; I+, > 10% lysis; *++, >15% lysis. ND, not done; NK, not protein 2. Adapted with permission from [30**1 and F Gotch, unpublished data.
t-,
Cross-clade
At least
two of the patients
documented
single
described
exposure
in this paper
to HIV.1 so it seems
had a
recent tive
studies
demonstrated
between
HI\<1
CTLs
and
which
were cross-reac-
Such
data
HIV.2
make
described, although not confirmed, putative offered by prior infection by HIV.2 to infection [32] unlikely
to be mediated
Conclusions The
relative
strategies
Further
studies
clade-B
viruses
are truly
es
need
viral-peptide
to be performed
of CTL
if cross-reactive
class I molecules
must
continue,
in
in genetically order
may be easily
CTL
Safrit J, Fung M, Andrews C: Hu-PBL-SCID mice can be protected from HIV.1 infection by passive transfer of monoclonal antibody to the principle neutralising determinant of envelope gp120. AlDS 1993, 7:15-21.
6.
Matthews T: Dilemma of neutralisation resistance and vaccine development. AlDS Res Hum Retrovirus 1994, lo:631 -632.
7.
Mascola J, Snyder S, Weislow 0, Belay S, Belshe R, Schwartz A, Clements M-L, Dolin R, Graham B, Gorse G et al.: lmmunisation with envelope subunit vaccine products elicits neutralising antibodies versus lab-adapted but not primary isolates of human immunodeficiency virus type I. J Infect Dis 1996, 173:340-348.
8.
Zollar-Pazner S, Alving C, Belshe R, Berman P, Burda S: Neutralisation of a clade B primary isolate by sera from human immunodeficiency virus-uninfected recipients of candidate AIDS vaccines. J Infect Dis 1997, 175:764-774.
that
diverse
9.
Fernandez M, Fidler S, Pitman R, Weber J, Rees A: CD4+ T cell recognition of diverse clade B HIV.1 isolates. A//IS 1997, 11:281-288.
vaccine-
quantitated
10.
Hislop H, Ng C, Li C, Smith C, Loftin S, Krance R, Brenner M, Rooney C: Long term restoration of immunity against EBV infection by adoptive transfer of gene-modified virus-specific T lymphocytes. Nat Med 1996, 2:551-555.
1 1.
Walter E, Greenberg P, Gilbert M, Finch R, Wantabe K, Thomas E, Riddel S: Reconstitution of cellular immunity against cytomegalovirus in recipients of allogeneic bone marrow by transfer of T-cell clones from the donor. N Engl J Med 1995, 333:1038-l 044.
12.
Myers G, Korber B, Berzofsky J, Smith R, Pavlakis G, Wain-Hobson S (Eds): Human refroviruses and AIDS 1993. A compilation and analysis of nucleic acid and amino acid sequences. Los Alamos, New Mexico: Los Alamos National Laboratory; 1993.
13.
Borrow P, Lewicki H, Wei X, Horwitz M, Peffer N, Meyers H, Nelson J, Gairin J, Hahn B, Oldstone M, Shaw G: Antiviral pressure exerted by HIV.1 specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus. Nat Med 1997, 3:205-21 1.
14.
Arioyoshi K, Berry N, Jafar S, Sabally S, Corrah T, Whittle H: HIV.2 specific CTL activity is inversely related to proviral load. AlDS 1995, 9:555-559.
15.
Moss P, Rowland-Jones S, Frodsham P, McAdam S, Giangrande P, McMichael A, Bell J: Persistent high frequency of HIV specific cytotoxic T cells in peripheral blood of infected donor;. Proc Nat/ Acad Sci USA 1995, 92:5773-5777.
16.
Rowland-Jones S, Nixon D, Aldous M, Gotch F, Ariyoshi K, Kroll S, Froebel K, McMichael A: HIV specific CTL activity in an HIV exposed but uninfected infant. Lancet 1993, 341:860-861.
17.
Rowland-Jones S, Sutton J, Ariyoshi K, Dong T, Gotch F, McAdam S, Whitby D, Sabally S, Gallimore A, Corrah T et a/.: HIV-specific cytotoxic T cells in HIV-exposed but uninfected Gambian women. Nat Med 1995, 1:59-64.
18.
Gallimore A, Cranage M, Cook N, Almond N, Bootman J, Rud E, Silvera P, Dennis M, Concoran C, Stott J, Gotch F: Early suppression of SIV replication by CD8+ nef-specific cytotoxic T cells in vaccinated macaques. /Vat Med 1995, 1 :l 167-l 173.
19.
Graham B, Keefer M, McElrath M, Gorse G, Schwartz D, Weinhold K, Matthews T, Esterlitz J, Sinangil F, Fast P: Safety and immunogenicity of a candidate HIV.1 vaccine in healthy adults: recombinant glycoprotein (rgp) 120. A randomised, double blind trial. Ann lntem Med 1996, 125:270-279.
20.
Keefer M, Graham B, McElrath M, Matthews T, Stablein D, Corey L, Wright P, Lawrence D, Fast P, Weinhold K et al.: Safety and immunogenicity of env2-3. A human immunodeficiency virus type 1 candidate vaccine, in combination with a novel adjuvent, MTPPE/MF59. AlDS Res Hum Retronrus 1996, 12:683-693.
21.
Fleury B, Janvier G, Pialoux G, Buseyne F, Robertson M, Tartaglia J, Paoletti E, Kieny M-P, Excler J, Riviere Y: Memory cytotoxic T
that non-
respons-
through
CTL common
populations
induced
CTL
[33]. It will also be
necessary to examine CTL activity in individuals infected with recombinant viruses; and to elucidate whether CTL responses
are cross-reactive
clonal
responses
potent
CTL-inducing
better
at the clonal
reflect
the i/l a&
immunogens
lope subunit
vaccines
of live-vector
unit boosting
may result in the generation
HIV.1
in eliciting
may lead
to good
responses, a vaccine less cross-reactivity. virus might [34]. The
challenge
protective
responses.
followed
The
by env-sub-
of multiple,
good
possible that, whilst natural of dynamic virus such as
polyclonal
to induce
remains
against
responses
Some
cross-reactive
cellular
based on a single sequence may induce A vaccine based on live, attenuated
be expected
ing reactivities
situation.
humoral
priming
responses. It remains with a quasispecies
or if poly-
may fall short of enve-
combination immune infection
level
cross-reacti\,e
of broadening
primary
isolates
responses
virus-neutralisand ensuring
that
are long lasting.
Thus significant cross-reactivity for CTL responses with evidence of either epitope conservation or cross-clade recognition has been demonstrated and this provides support for the strategy of initiating trials with vaccines based on Bclade immunogens in areas of the world where the B clade is not common
but where
the need
for a vaccine
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HLA
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391
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