Enhancing riboflavin production by genetic modification of purine pathway in Bacillus subtilis

Enhancing riboflavin production by genetic modification of purine pathway in Bacillus subtilis

Abstracts / Journal of Biotechnology 136S (2008) S22–S71 S35 I1-P-031 I1-P-032 Expression of Vitreoscilla hemoglobin enhances growth and productio...

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Abstracts / Journal of Biotechnology 136S (2008) S22–S71

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I1-P-031

I1-P-032

Expression of Vitreoscilla hemoglobin enhances growth and production of riboflavin in recombinant Bacillus subtilis

Study on antibiotic substances metabolized by Monascus purpureus

Yunxia Duan 1 , Shuobo Shi 1 , Tao Chen 1 , Xun Chen 1 , Yi Gong 2 , Shengli Yang 2 , Xueming Zhao 1,∗

Zhao Shuxin ∗ , Zeng Luyan, Li Yi

1

Department of Biochemical Engineering, School of Chemical Engineering and Technology, Edinburgh-Tianjin Joint Research Centre for Systems Biology and Synthetic Biology, Tianjin University, Tianjin 300072, China 2 Shanghai Research Center of Biotechnology, Academic Sinica, Shanghai 200233, China E-mail address: [email protected] (X. Zhao).

Riboflavin is a commercially important vitamin used for pharmaceuticals, feed additives, cosmetics, and food industry. The whole riboflavin biosynthesis is an energy consumption step from the sum riboflavin biosynthesis reaction (Zamboni, 2003). Vitreoscilla hemoglobin (VHb), which is produced by Vitreoscilla in hypoxic environments can enhance the ATP synthesis rate and microaerobic respiration efficiency (Chen and Bailey, 1994; Kallio et al., 1994). In order to further enhance riboflavin biosynthesis, vgb gene which encodes VHb was integrated into the chromosome of genetically engineered strain B. subtilis PY and its influence on physiological characters has been investigated. The apparent phenotype with more rapid specific growth rate, higher oxygen uptake rate and higher biomass was achieved under oxygen-limited conditions in batch cultivation. A metabolic flux distribution analysis discloses that VHb can also facilitate oxygen delivering, generate sufficient oxygen flux and direct interaction with the respiratory apparatus of the cell and thus relieve the overflow metabolism. Therefore, VHb-expression strains have a lower adenosine triphosphate (ATP) synthesis rate from substrate-level phosphorylation but a higher overall ATP production rate under microaerobic conditions. The increased higher oxygen uptake rate, as well as decreased by-products could explain the increased biomass and riboflavin production in VHb-expression strain. The expression of VHb also improved the biomass and yield of riboflavin compared with the control strain under fed-batch fermentation, and 28% higher biomass and about 20% improvement of the yield of riboflavin were obtained. Acknowledgement

Tianjin Key Laboratory of Industrial Microbiology, Tianjin University of Science & Technology, Tianjin 300457, China E-mail address: [email protected] (Z. Shuxin). Monascus has been used for thousands of years in China, after fermentation whose products (Red qu) contains many high value substances. Nowadays, the public has recognized the importance of Monascus products. The focus of this study is to explore the antibiotic substances except citrinin and pigments. First, we crushed the mycelium by ultrasonic crusher, then filtrated by vacuum pump and decolored by active carbon. Second, HPLC analyzes (Wang et al., 2005) the decolored sample. The result demonstrated that citrinin has reduced to 88–98% of its base level after decolored. The content of citrinin was reduced from 0.058 ␮g/ml to 0.002 ␮g/ml. Pigment analysis showed that after decolored, yellow and red pigments were reduced from 12.8 U/g and 17.1 U/g to 0.036 U/g and 0.016 U/g. From the research, we can confirm that citrinin and pigments have no impact on bacteriostatic effect of the decolored sample. Third, disc papers was used to ascertain bacteriostatic effect of decolored sample that has ability to inhibited Bacillus cereus and Staphylococcus aureus and has no effect on E. coli and Saccharmoyces cerevisiae. From this experiment, we can conclude that there was some other antibiotic substance in Red qu except citrinin and pigments. Forth, using dialysis bag technique dialyses the sample, then test different parts respectively. From the result, we can confirm that the substance with bacteriostatic effect was below 1 kDa. Qualitative analysis (Zhang and Guo, 2003; Boubekeur et al., 2007) showed that antibiotic substance contains the carbohydrate and amino acid, and the substance was identified as carbohydrate-peptide linkage by the thin-layer chromatography. References Boubekeur, Badji, Abdellah, Mostefaoui, Nasserdine, Sabaou, Ahmed, Lebrihi, 2007. Isolation and partial characterization of antimicrobial compounds from a new strain Nonomuraea sp. NM94. J. Ind. Microbiol. Biotechnol. 34, 403–412. Wang, Y.Z., Ju, X.L., Zhou, Y.G., 2005. The variability of citrinin production in Monascus type cultures. Food Microbiol. 22, 145–148. Zhang, X.M., Guo, S.T., 2003. Isolation and identification of the glycopeptide from ␤-conglycincin soy protein hydrolysate. Food Sci. 10, 26–29.

This work was supported by NSFC-20536040, 973-2007CB 707802 and TJ-05YFGZGX04500.

doi:10.1016/j.jbiotec.2008.07.069

References

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Chen, R., Bailey, J.E., 1994. Energetic effect of Vitreoscilla hemoglobin expression in Escherichia coli: an on-line 31P NMR and saturation transfer study. Biotechnol. Prog. 10, 360–364. Kallio, P.T., Kim, D.J., Tsai, P.S., Bailey, J.E., 1994. Intracellular expression of Vitreoscilla hemoglobin alters Escherichia coli energy metabolism under oxygen-limited conditions. Eur. J. Biochem. 219, 201–208. Zamboni, N., 2003. Metabolic engineering of respiration for improved riboflavin production and elucidation of NADPH metabolism in Bacillus subtilis. Ph.D. Thesis. Switzerland.

Enhancing riboflavin production by genetic modification of purine pathway in Bacillus subtilis

doi:10.1016/j.jbiotec.2008.07.068

E-mail address: [email protected] (X. Zhao).

Shuobo Shi ∗ , Tao Chen, Xun Chen, Qiuli Wu, Yu Gan, Xueming Zhao Department of Biochemical Engineering, School of Chemical Engineering and Technology, Edinburgh-Tianjin Joint Centre for Systems Biology and Synthetic Biology, Tianjin University, Tianjin 300072, China

Riboflavin is an essential nutrient for humans and animals and it is an important food additive. By means of classical mutagenesis and gene manipulations, Bacillus subtilis has turned into an excellent riboflavin producer strain (Perkins et al., 1999; Van Loon et al., 1996). By further increasing riboflavin operon dosages or over-expression of the key riboflavin biosynthesis gene ribA in an

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Abstracts / Journal of Biotechnology 136S (2008) S22–S71

engineered strain B. subtilis PK, there were no notable effects on enhancing riboflavin production (Li et al., 2006). It was inferred that riboflavin production of B. subtilis PK was limited by the supply of GTP, one of the immediate precursors for riboflavin biosynthesis. Here we reported that intracellular phosphoribosyl pyrophosphate (PRPP) concentration in B. subtilis PK was only about 50% of that in wild-type strain. Subsequently, to manipulate purine pathway, an additional purF gene under control of the constitutively expressed P43 promoter encoding PRPP amidotransferase was introduced into the purF locus of chromosome in B. subtilis PK by Campell-type mechanism. Real-time quantitative PCR analyses suggested that the transcription levels of purF gene and its downstream genes in the purine operon were higher in the transformant B. subtilis PK-P, and enzyme activity assays indicated that the PRPP amidotransferase was elevated to about twofold during the fermentation process. With these manipulations, a 31% increase in the riboflavin production and a 25% increase in the yield were obtained in B.subtilis PK-P. Besides, the subsequent metabolite analysis indicated that the modification in purine operon resulted in higher intracellular concentration of purine nucleotides and improved the supply of purine precursor for riboflavin biosynthesis.

molecule were needed for the formation of one riboflavin molecule (Hümbelin et al., 1999), DHBP was consumed at a higher rate, which resulted an imbalance supply of riboflavin synthesis precursors. It was supposed that more DHBP synthase should be needed to produce more DHBP, which could abolish the imbalance of precursors supply. In addition, we constitutively overexpressed the purF gene to increase GTP pool in B. subtilis RH44 but it had no obvious effect on riboflavin production, which further supported this hypothesis. To solve this imbalance problem, ribB gene from E. coli which only coding the DHBP synthase (Richter et al., 1992) was selected and was overexpressed under control of a xylose-inducible promoter in B. subtilis RH44. As a result, the DARPP concentration decreased significantly, and a 20% increase in the riboflavin production was obtained when the expression of ribB was induced by xylose, which suggested that the expression of ribB gene from E. coli would produce more DHBP to recover the balance of the precursors supply. Acknowledgements This work was supported by NSFC-20536040, 973-2007CB707802 and TJ-05YFGZGX04500.

Acknowledgement This work was supported by NSFC-20536040, 973-2007CB 707802 and TJ-05YFGZGX04500. References Li, X.J., Chen, T., Chen, X., Zhao, X.M., 2006. Redirection electron flow to high coupling efficiency of terminal oxidase to enhance riboflavin biosynthesis. Appl. Microbiol. Biotechnol. 73, 374–383. Perkins, J.B., Sloma, A., Hermann, T., Theriault, K., Zachgo, E., Erdenberger, T., Hannett, N., Chatterjee, N.P., Williams II, V., Rufo Jr., G.A., Hatch, R., Pero, J., 1999. Genetic engineering of Bacillus subtilis for the commercial production of riboflavin. J. Ind. Microbiol. Biotechnol. 22, 8–18. Van Loon, A.P.G.M., Hohmann, H.-P., Bretzel, W., Hümbelin, M., Pfister, M., 1996. Development of a fermentation process for the manufacture of riboflavin. Chimica 50, 410–412.

doi:10.1016/j.jbiotec.2008.07.070 I1-P-034 Abolishing the imbalance supply of precursors in Bacillus subtilis RH44 to increase riboflavin production Shuobo Shi ∗ , Tao Chen, Xun Chen, Qiuli Wu, Yu Gan, Xueming Zhao Department of Biochemical Engineering, School of Chemical Engineering and Technology, Edinburgh-Tianjin Joint Centre for Systems Biology and Synthetic Biology, Tianjin University, Tianjin 300072, China E-mail address: [email protected] (X. Zhao). The immediate precursors for riboflavin synthesis are GTP and ribulose-5-phosphate. In parallel reactions GTP is converted by a GTP cyclohydrolase II into 2,5-diamino-6-ribosylamino-4(3H)pyrimidinone-5-phosphate (DARPP) and ribulose-5-phosphate is converted by 3,4-dihydroxy-2-butanone 4-phosphate (DHBP) synthase into DHBP. In Bacillus subtilis both of the enzymes are coding by the same gene ribA (Hümbelin et al., 1999). In this study, the metabolites concentration of wild-type B. subtilis 168 and an riboflavin-producing strain B. subtilis RH44 (Wu et al., 2007) were analyzed by LC–MS. It was showed that the concentration of DARPP was higher in B. subtilis RH44, which was contributed by overexpression of the rib operon. However, the concentration of DHBP was at a low level. Since two DHBP molecules and one DARPP

References Hümbelin, M., et al., 1999. GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone 4-phosphate synthase are rate-limiting enzymes in riboflavin synthesis of an industrial Bacillus subtilis strain used for riboflavin production. J. Ind. Microbiol. Biotechnol. 22, 1–7. Richter, G., Volk, R., Krieger, C., Lahm, H.-W., Röthlisberger, U., Bacher, A., 1992. Biosynthesis of riboflavin: cloning, sequencing, and expression of the gene coding for 3,4-dihydroxy-2-butanone 4-phosphate synthase of Escherichia coli. J. Bacteriol. 174, 4050–4056. Wu, Q.L., Chen, T., Gan, Y., Chen, X., Zhao, X.M., 2007. Optimization of riboflavin production by recombinant Bacillus subtilis RH44 using statistical designs. Appl. Microbiol. Biotechnol. 76, 783–794.

doi:10.1016/j.jbiotec.2008.07.071 I1-P-035 Disruption of acetoacetate decarboxylase gene in solventproducing Clostridium acetobutylicum increases butanol ratio Yu Jiang 1,2,3,∗ , Yunliu Jiang 1,2

Yang 1,2,3 , Sheng

Yang 1,2,3 , Weihong

1 Laboratory of Molecular Microbiology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China 2 Research Center of Industrial Biotechnology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China 3 Huzhou Center of Industrial Biotechnology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Huzhou 313000, China

E-mail addresses: [email protected] (S. Yang), [email protected] (W. Jiang). Butanol is an important industrial chemical and fuel currently produced via petrochemical routs, which is generally expensive and not environmentally friendly. The bioproduction of butanol is typically referred to as ABE (acetone–butanol–ethanol) fermentation by Clostridium acetobutylicum (Chiao and Sun, 2007). C. acetobutylicum EA 2018 (CCTCC M 94061) was bred in our laboratory, which had a higher butanol ratio (70% of the total solvents, butanol 14 g/l) than that of the model type C. acetobutylicum ATCC 824 (60% of the total solvents, butanol 12 g/l) (Zhang et al., in press). To further increase