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fmi: Table of Contents
Contents lists available at ScienceDirect
Journal of Biomedical Informatics journal homepage: www.elsevier.com/locate/yjbin
Volume 70, June 2017 CONTENTS CALL FOR PAPERS James Geller, Licong Cui, Christopher Ochs, GQ Zhang, Yehoshua Perl. Quality Assurance of Biomedical Terminologies and Ontologies . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
52
LETTER TO THE EDITOR Esmaeil Akbari.
The effect of American and British spelling differences on information retrieval by PubMed . . . . . . . . . . .
92
ORIGINAL RESEARCH PAPERS Tim Wysocki, Maria Carmen G. Diaz, James H. Crutchfield Jr., James P. Franciosi, Lloyd N. Werk. Electronic health record as a research tool: Frequency of exposure to targeted clinical problems and health care providersÕ clinical proficiency . . . . . .
14
George Karystianis, Kristina Thayer, Mary Wolfe, Guy Tsafnat. Evaluation of a rule-based method for epidemiological document classification towards the automation of systematic reviews . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
27
Po-Hsiang Chiu, George Hripcsak.
35
EHR-based phenotyping: Bulk learning and evaluation . . . . . . . . . . . . . . . . . . . .
Reza Ferdousi, Reza Safdari, Yadollah Omidi. Computational prediction of drug-drug interactions based on drugs functional similarities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
54
Keiichi Yamamoto, Keiko Ota, Ippei Akiya, Ayumi Shintani. A pragmatic method for transforming clinical research data from the research electronic data capture ‘‘REDCap’’ to Clinical Data Interchange Standards Consortium (CDISC) Study Data Tabulation Model (SDTM): Development and evaluation of REDCap2SDTM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
65
Srinivas Allanki, Madhulika Dixit, Paul Thangaraj, Nandan Kumar Sinha. Analysis and modelling of septic shock microarray data using Singular Value Decomposition . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
77
Mourad Gridach.
85
Character-level neural network for biomedical named entity recognition . . . . . . . . . . . . . . . . . . . .
METHODOLOGICAL REVIEW Richard Williams, Evangelos Kontopantelis, Iain Buchan, Niels Peek. Clinical code set engineering for reusing EHR data for research: A review . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
For the full and complete journal Guide for Authors, please see http://www.elsevier.com/locate/yjbin. Manuscripts must be submitted through the online submission system available at: http://ees.elsevier.com/jbi/.
1
Journal of Biomedical Informatics journal homepage: www.elsevier.com/locate/yjbin
Volume 70, June 2017 CONTENTS CALL FOR PAPERS James Geller, Licong Cui, Christopher Ochs, GQ Zhang, Yehoshua Perl. Quality Assurance of Biomedical Terminologies and Ontologies . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
52
LETTER TO THE EDITOR Esmaeil Akbari.
The effect of American and British spelling differences on information retrieval by PubMed . . . . . . . . . . .
92
ORIGINAL RESEARCH PAPERS Tim Wysocki, Maria Carmen G. Diaz, James H. Crutchfield Jr., James P. Franciosi, Lloyd N. Werk. Electronic health record as a research tool: Frequency of exposure to targeted clinical problems and health care providersÕ clinical proficiency . . . . . .
14
George Karystianis, Kristina Thayer, Mary Wolfe, Guy Tsafnat. Evaluation of a rule-based method for epidemiological document classification towards the automation of systematic reviews . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
27
Po-Hsiang Chiu, George Hripcsak.
35
EHR-based phenotyping: Bulk learning and evaluation . . . . . . . . . . . . . . . . . . . .
Reza Ferdousi, Reza Safdari, Yadollah Omidi. Computational prediction of drug-drug interactions based on drugs functional similarities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
54
Keiichi Yamamoto, Keiko Ota, Ippei Akiya, Ayumi Shintani. A pragmatic method for transforming clinical research data from the research electronic data capture ‘‘REDCap’’ to Clinical Data Interchange Standards Consortium (CDISC) Study Data Tabulation Model (SDTM): Development and evaluation of REDCap2SDTM . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
65
Srinivas Allanki, Madhulika Dixit, Paul Thangaraj, Nandan Kumar Sinha. Analysis and modelling of septic shock microarray data using Singular Value Decomposition . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
77
Mourad Gridach.
85
Character-level neural network for biomedical named entity recognition . . . . . . . . . . . . . . . . . . . .
METHODOLOGICAL REVIEW Richard Williams, Evangelos Kontopantelis, Iain Buchan, Niels Peek. Clinical code set engineering for reusing EHR data for research: A review . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
For the full and complete journal Guide for Authors, please see http://www.elsevier.com/locate/yjbin. Manuscripts must be submitted through the online submission system available at: http://ees.elsevier.com/jbi/.
1