VPH-06130; No of Pages 5 Vascular Pharmacology xxx (2014) xxx–xxx
Contents lists available at ScienceDirect
Vascular Pharmacology
Review
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Genetic therapies to lower cholesterol
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Bernard Khoo ⁎
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Endocrinology, Division of Medicine, University College London, London, United Kingdom
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Article history: Received 29 August 2014 Received in revised form 5 December 2014 Accepted 16 December 2014 Available online xxxx
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Keywords: Familial hypercholesterolaemia Genetic therapy Antisense oligonucleotides RNA splicing Mipomersen Small interfering RNA PCSK9 Apolipoprotein B LDL receptor Low density lipoprotein
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Familial hypercholesterolaemia (FH) is a common disease, characterised by high low density lipoprotein (LDL) cholesterol and premature atherosclerosis. Normally, the liver assembles very low density lipoprotein (VLDL) particles from the full-length isoform of Apolipoprotein B (APOB100) plus triglycerides, cholesterol and cholesteryl esters in the rough endoplasmic reticulum and the Golgi. After secretion, the VLDL particles are metabolised by peripheral tissue lipoprotein lipase into intermediate density and LDL particles (Fig. 1A). LDL particles are then cleared via the LDL receptor (LDLR) in the liver. FH is caused by mutations in LDLR, gain of function mutations in the serine protease PCSK9 which binds and designates LDLR for lysosomal degradation or accessory proteins such as LDLRAP1, which lead to loss-of-function of the LDLR. As a result, the normal clearance of LDL particles by binding of Apolipoprotein B100 (APOB100) to the LDLR on the cell surface of hepatocytes is disrupted, leading to accumulation of LDL particles in circulation which drive accelerated atherosclerosis (Fig. 1B). A similar physiological and clinical picture is observed in patients with familial defective APOB (FDB) who possess point mutations in the APOB gene that disrupt binding of APOB100 to the LDLR [1]. Heterozygous FH (HeFH) is the most common form, in which patients inherit one mutant allele of a causative gene, and is characterised
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This review surveys the state-of-the-art in genetic therapies for familial hypercholesterolaemia (FH), caused most commonly by mutations in the LDL receptor (LDLR) gene. FH manifests as highly elevated low density lipoprotein (LDL) cholesterol levels and consequently accelerated atherosclerosis. Modern pharmacological therapies for FH are insufficiently efficacious to prevent premature cardiovascular disease, can cause significant adverse effects and can be expensive. Genetic therapies for FH have been mooted since the mid 1990s but gene replacement strategies using viral vectors have so far been unsuccessful. Other strategies involve knocking down the expression of Apolipoprotein B100 (APOB100) and the protease PCSK9 which designates LDLR for degradation. The antisense oligonucleotide mipomersen, which knocks down APOB100, is currently marketed (with restrictions) in the USA, but is not approved in Europe due to its adverse effects. To address this problem, we have devised a novel therapeutic concept, APO-skip, which is based on modulation of APOB splicing, and which has the potential to deliver a cost-effective, efficacious and safe therapy for FH. © 2014 Published by Elsevier Inc.
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journal homepage: www.elsevier.com/locate/vph
⁎ Endocrinology, Division of Medicine, UCL, Royal Free Campus, London NW3 2PF, United Kingdom. Tel.: +44 20 77940500x33383. E-mail address:
[email protected].
by elevations of LDL cholesterol N 4.9 mmol/L [2]. Homozygous FH (HoFH) is the most severe form in which patients inherit two mutant alleles, usually of LDLR. Similar severe HoFH clinical pictures are also seen when patients inherit two different mutant alleles of the same gene (compound heterozygosity) or two mutant alleles impacting different causative genes (e.g., LDLR plus one of either PCSK9, LDLRAP1 or APOB — double heterozygotes). HoFH is characterised by even higher LDL cholesterol levels N 13 mmol/L, and a first presentation of myocardial infarction typically in adolescence [3,4]. Although the prevalences of HeFH and HoFH in unselected populations have traditionally been quoted at 1 per 500 and 1 per million respectively, more recent data indicates that these conditions may be much more prevalent than previously recognised at 1 per 200 and 1 per 160,000–320,000 respectively [3]. FDB is also relatively common in the population at 1 per 1000 [5]. Frequently, patients with these conditions are not aware that they have hypercholesterolaemia until they present with myocardial infarction or stroke. This makes case detection and effective early treatment paramount in the management of these conditions. In HoFH patients, lipid lowering therapy, such as with high-dose, high-potency HmG CoA reductase inhibitors (‘statins’), is able to reduce the morbidity and mortality of atherosclerosis. However, present lipid lowering drugs are not potent enough to reduce LDL cholesterol levels to target. As a result, HoFH patients are still exposed to early development of cardiovascular disease, and they suffer side effects from the treatment such as myalgia and elevations in liver transaminases [6].
http://dx.doi.org/10.1016/j.vph.2014.12.002 1537-1891/© 2014 Published by Elsevier Inc.
Please cite this article as: Khoo B, Genetic therapies to lower cholesterol, Vascul. Pharmacol. (2014), http://dx.doi.org/10.1016/j.vph.2014.12.002
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Fig. 1. Physiology of VLDL secretion and processing into LDL (A) and the pathophysiology of FH (B). (A) The liver assembles VLDL particles containing triglycerides and cholesterol, APOB100 and Apolipoprotein E (APOE). The action of peripheral tissue lipoprotein lipase (LPL) hydrolyses the triglycerides to fatty acids which are taken up by the tissues, and the VLDL particles are progressively metabolised to intermediate density lipoprotein (IDL) and then low density lipoprotein (LDL). Some of the cholesterol-rich LDL particles are bound by LDLR and non-hepatic LDL receptors (scavenger receptors) in peripheral tissues, allowing cholesterol to be transported to these tissues. The remaining LDL particles (40–60%) are cleared by the liver via binding of LDL receptor (LDLR) to APOB100. (B) Defective or missing LDLR leads to reduced hepatic clearance of LDL particles, accumulation of LDL particles in circulation, and accelerated atherosclerosis.
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Given the fact that most cases of FH are due to defective LDLR, the simplest approach to therapy would be to transduce a good copy of LDLR into hepatocytes, restoring LDLR expression and function, and thereby reducing LDL cholesterol levels. Initially, promising results were obtained in animal studies, such as in Ldlr knockout mice where the introduction of the human LDLR gene via an adenoviral vector was shown to ameliorate the hypercholesterolaemia observed in these mice after high-cholesterol feeding [8]. It was therefore natural to move on to early clinical studies, and Grossman et al. were able to demonstrate successful transduction of LDLR into the livers of 5 patients with HoFH using a retroviral vector in 1995. In one patient, there was a significant reduction in LDL cholesterol, implying restoration of LDL catabolism [9]. Despite this significant early progress, the initial promise of gene replacement therapy has not been fulfilled. The main roadblocks to gene replacement have been in obtaining efficient transduction of enough copies of the LDLR gene into the liver to assure sufficient restoration of LDL clearance, and concerns regarding the safety of the viral vectors used for this purpose remain. More modern vectors such as adeno-associated virus (AAV) serotype 8 may address the efficiency issue, and show promise in animal models [10]. Even if successful, however, this LDLR replacement strategy does not address the subset of patients who have FH due to mutations in PCSK9, LDLRAP1, or those with FDB.
This approach has been adopted by Isis Pharmaceuticals/Genentech with their antisense oligonucleotide-based drug, mipomersen. Mipomersen is a hybrid antisense oligonucleotide (ASO) which combines 2′-O-methoxyethyl RNA ‘wings’ with a central portion of 10 nucleotides which is based on DNA. This ‘gap-mer’ ASO is able to bind to the APOB mRNA within hepatocytes. The hybridization of the central portion's DNA to the mRNA acts as a substrate for RNase H, which cleaves RNA/DNA hybrids. In this way, the APOB mRNA is destroyed, leading to successful knockdown of APOB100 expression and consequent reductions in LDL cholesterol [11,12]. In clinical trials in patients with HoFH, weekly subcutaneous injections of mipomersen were able to reduce LDL cholesterol levels by ~25% [13]. The expectation is that this will translate to reduced morbidity and mortality, supported by animal studies [14]. However, mipomersen's pathway to the bedside has been beset by safety issues. The most common adverse effects were injection site reactions, elevations in liver function tests and flu-like symptoms. As a result, mipomersen has only been approved by the FDA under a Risk Evaluation Mitigation Strategy (REMS) [15]. Mipomersen has not been approved by the European authorities who cited specific concerns regarding the adverse effects, the relatively high drop-out rate from treatment, and an apparent increase in cardiovascular events in treated patients, in contradiction to expectations [16]. Lastly, mipomersen has been marketed at a cost of at least US$176,000 per annum. Given that this is a lifelong treatment, the cost will limit its appeal and restrict its use only to the most affected HoFH patients. Small interfering RNA (siRNA) technology has also been used to knockdown APOB expression in non-human primates, leading to reductions of LDL cholesterol [17]. Because siRNA therapies require relatively unmodified RNA duplexes, they are generally formulated in delivery formulations to allow them to reach the liver without being degraded, in this case a lipid nanoparticle formulation called SNALP was used. This therapy, TKM-ApoB, underwent Phase I clinical trials in 2009, with LDL cholesterol reductions of 16.3% reported at the highest doses tested, but one subject had an immunological reaction to the drug [18]. Clinical development of this therapy appears to have been halted.
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APOB100 is the integral structural apolipoprotein for LDL particles. As mentioned earlier, APOB100 is assembled with triglycerides, cholesteryl esters and cholesterol into VLDL particles by the liver before secretion. Therefore, down-regulation of APOB100 expression leads to reduced VLDL assembly and secretion, and reduced LDL particle levels.
PCSK9 is a protease of the subtilisin-like proprotein convertase family of enzymes which regulates the cell surface expression of LDLR by degradation [19]. As mentioned above, gain-of-function mutations in PCSK9 are responsible for some cases of FH. Logically, reduction/knockdown of PCSK9 will increase LDLR cell surface expression and will
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Other treatments, such as LDL apheresis, are temporarily effective but are extremely expensive and invasive [7]. As a result, new treatments for HoFH are sorely needed. This review will summarise some recent developments in the field of therapy for FH. Specifically, it will concentrate on genetic approaches to FH therapy, notably APOB100 knockdown using antisense oligonucleotide and RNA interference approaches, PCSK9 knockdown to increase cell-surface LDLR expression, and splice-switching as a means of reengineering APOB expression and function.
Please cite this article as: Khoo B, Genetic therapies to lower cholesterol, Vascul. Pharmacol. (2014), http://dx.doi.org/10.1016/j.vph.2014.12.002
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A clue as to an entirely novel method for treating FH can be found in the condition familial hypobetalipoproteinaemia (FHBL). FHBL is due to heterozygous mutations in APOB that cause the expression of Cterminally truncated APOB100 isoforms such as APOB89 and APOB87Padova. The truncated APOB inhibits VLDL assembly and secretion, and LDL particles bearing APOB truncations are cleared faster from the circulation [24]. Patients with FHBL therefore have the antithetical phenotype to FH, with extremely low LDL cholesterol levels (typically b1.8 mmol/L). As a consequence, patients with FHBL are protected from cardiovascular disease and live longer than normal people [25]. Elective truncation of APOB100 would therefore be expected to replicate FHBL and to reduce LDL cholesterol. To accomplish this goal, we designed and tested a method to exclude exon 27 (‘exon-skipping’)
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during RNA splicing, leading to a frameshift and premature termination codon within the exon 28 sequence, as opposed to the usual termination within exon 29 (Fig. 2). In turn, translation of the exon-skipped mRNA leads to the expression of a truncated APOB87 isoform [26]. This can be accomplished using APO-skip SSOs which are ASOs based on phosphorothioate 2′-O-methyl RNA chemistry. These are designed to bind to intronic splice sites flanking APOB exon 27, and confer a secondary structure to the pre-mRNA that favours exclusion of exon 27. With sequence optimization and chemical modification with phosphorothioate groups to confer stability to nucleases, exon-skipping efficiency has been increased up to 15-fold in vitro over the prototype SSOs tested in 2007 [28]. The APO-skip therapeutic concept was validated in hypercholesterolaemic mice transgenically expressing human APOB. APO-skip SSOs can durably reduce LDL cholesterol by 34–51% when injected at weekly intervals for 8 weeks. This is a striking result when it is realized that only 6% of the APOB mRNA has been exon-skipped, and the powerful reductions in LDL cholesterol achieved are due to the dual mechanism activated by the SSOs: reduced assembly plus increased clearance [28]. More recently we have developed 2nd and 3rd generation APO-skip SSOs that are, when combined with liver-specific delivery formulations, able to increase in vivo potency by over 10-fold. The prospect, therefore, is that powerful lipid lowering effects can be obtained with markedly smaller amounts of SSO, reducing costs and potential adverse effects. In addition, direct liver delivery is likely to obviate the development of skin reactions and anti-oligonucleotide antibodies which are observed in patients treated with therapeutic oligonucleotides such as mipomersen [15] (Fig. 3). The key difference that distinguishes the APO-skip technique from simple knockdown of APOB, as employed by mipomersen and TKMApoB, is that it does not interfere with intestinal fat transport and
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reduce LDL levels by increasing hepatic clearance. Indeed, monoclonal antibodies against PCSK9 are capable of reducing LDL cholesterol levels in patients with HeFH by up to 68% [20]. Therapies based on siRNA to knockdown PCSK9 have also been shown to reduce LDL cholesterol in Phase I trials in healthy volunteers by 40% [21]. More recently, clustered regularly interspaced short palindromic repeats (CRISPR)-Cas9 nuclease genome editing has been used to knockdown PCSK9 expression in mice. This method, which involves vector-mediated delivery of ‘guide’ RNAs to mutagenise PCSK9 could potentially be developed into a ‘one-shot’ permanent solution to reduce LDL cholesterol [22]. However, the lipid lowering mechanism of PCSK9 knockdown is dependent on the presence of at least some functional LDLR. In patients with HoFH, PCSK9 inhibitors are markedly less effective and in some cases completely ineffective [23]. This limits the utility of this approach in HoFH.
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Fig. 2. How APOB exon 27 skipping leads to truncation of APOB87. The exons 26 to 29 at the 3′ end of the APOB gene are shown schematically as rectangles with the introns shown as connecting lines. In the liver, APOB100 is translated from the constitutively spliced APOB100 mRNA, which includes exon 27 (top). In the intestine, the shorter APOB48 isoform is translated from the APOB100 mRNA after RNA editing of a CAA to a UAA stop codon represented by the blue marker in exon 26 [27]. Exon-skipping exon 27 leads to the generation of APOB87 mRNA with frame-shifted exon 28 & 29 sequences and a premature stop codon (red marker in exon 28). Thus, a truncated APOB protein, APOB87, is translated. Exon 27 skipping does not interfere with the exon 26 sequence, so APOB48 RNA editing and expression can proceed normally. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
Please cite this article as: Khoo B, Genetic therapies to lower cholesterol, Vascul. Pharmacol. (2014), http://dx.doi.org/10.1016/j.vph.2014.12.002
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Genetic therapies for FH have come a long way since the early trials of replacement gene therapy some 20 years ago. APOB100 knockdown has become a prime target for the treatment of FH and one genetic therapy, mipomersen, is currently marketed. However, the safety and tolerability issues that cloud mipomersen mean that new therapeutic concepts, preferably reducing adverse effects, are still needed. APOskip SSOs, which truncate APOB100 and lower LDL cholesterol via a unique dual mechanism, represent such a new concept with the potential to deliver a cost-effective, efficacious and safe therapy.
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Support for the APO-skip project was given by the Medical Research Council Developmental Pathway Research Scheme (G0802469), and UCL Business. The author wishes to acknowledge and thank Dr. Petra Disterer, Dr. Paul Simons and Prof. James Owen for their crucial contributions to the APO-skip project. This article is based on a presentation at the 8th International Workshop on Cardiovascular Biology & Translational Medicine held in London in September 2013.
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metabolism. APOB48, the natural alternate isoform of APOB, is expressed exclusively in the intestine and is expressed by RNA editing of the APOB mRNA sequence within exon 26 to generate a premature termination codon (Fig. 2). As a result, APOB48, which is identical to the N-terminal 48% of the full-length liver APOB100 isoform, is expressed and assembled into the chylomicron particle, which transports dietary fat to peripheral tissues. Importantly, simple knockdown of the APOB mRNA causes an off-target downregulation of APOB48 expression and chylomicron levels as both APOB100 and APOB48 originate from the same mRNA. For example, siRNA knockdown causes a drop in chylomicron levels of 50% [17]. This could lead to fat malabsorption, steatorrhoea, malabsorption of fat-soluble vitamins such as Vitamin K, and therefore potential interactions with drugs such as warfarin. Similar adverse effects are observed in clinical trials with the microsomal triglyceride transfer protein inhibitor lomitapide, which also interferes with chylomicron assembly [29]. Because APO-skip SSOs do not reduce APOB48 expression [28] this off-target effect is obviated, again reducing the potential for adverse effects. Mipomersen, lomitapide and APO-skip SSOs share a common mechanism in reducing VLDL assembly in the liver and this is expected to cause fat accumulation in the liver, similar to that observed in patients with FHBL. The clinical significance of this hepatosteatosis is unclear; in patients with FHBL it does not seem to be associated with other metabolic derangements such as insulin resistance [30].
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Fig. 3. APO-skip SSOs reduce LDL cholesterol in vivo. APO-skip SSO 14-53P and scrambled negative control sc14-53P were formulated in Invivofectamine 2.0 and injected at 20 mg/kg on a weekly basis into transgenic human APOB (hAPOB) mice. Two other groups of mice were given pravastatin (statin) and ordinary tap water (untreated, UT). Left panel: At termination, total liver RNA was extracted and analysed for exon 27 skipping: mean 7 ± S.D. 4% with SSO 14-53P, no significant skipping detected in other groups. Right panel: Percentage changes in LDL cholesterol corrected for changes observed for the placebo groups: week 3 SSO 14-53P (green; −51 ± 19%) and Pravastatin (grey; −13 ± 13%), week 6 SSO 14-53P (−33 ± 23%) and Pravastatin (−4 ± 6%) and week 8 SSO 14-53P (−34 ± 12%) and Pravastatin (−3 ± 9%). (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
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