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Geochemistry articles – July 2006
Organic Geochemistry Organic Geochemistry 37 (2006) I–XIV www.elsevier.com/locate/orggeochem
GEOCHEMISTRY ARTICLES – July 2006
Analytical Chemistry Recent developments in comprehensive two-dimensional gas chromatography (GC · GC): III. Applications for petrochemicals and organohalogens Adahchour, M., Beens, J., Vreuls, R.J.J., Brinkman, U.A.T., 2006. TrAC Trends in Analytical Chemistry 25, 726–741. Identification of three novel compounds in wine by means of a laboratory-constructed multidimensional gas chromatographic system Campo, E., Ferreira, V., Lo´pez, R., Escudero, A., Cacho, J., 2006. Journal of Chromatography A 1122, 202–208. Automated intensity descent algorithm for interpretation of complex high-resolution mass spectra Chen, L., Sze, S.K., Yang, H., 2006. Analytical Chemistry 78, 5006–5018. The separation of aromatics from olefins in petroleum samples using forte BPX90 DiFeo Jr., D., 2006. LC/GC North America 24, 50. Gas-liquid chromatographic study of thermodynamics of some alkanes on polysiloxane stationary phase El-Naggar, A.Y., 2006. Petroleum Science and Technology 24, 752–767. Analysis of nitro-polycyclic aromatic hydrocarbons in conventional diesel and Fischer-Tropsch diesel fuel emissions using electron monochromator-mass spectrometry Havey, C.D., McCormick, R.L., Hayes, R.R., Dane, A.J., Voorhees, K.J., 2006. Analytical Chemistry 78, 4894–4900. Identification of hydrotreatment-resistant heteroatomic species in a crude oil distillation cut by electrospray ionization FT-ICR mass spectrometry Klein, G.C., Rodgers, R.P., Marshall, A.G., 2006. Fuel 85, 2071–2080. Fatty Acid Analysis Tool (FAAT): An FT-ICR MS lipid analysis algorithm Leavell, M.D., Leary, J.A., 2006. Analytical Chemistry 78, 5497–5503. Combining the enantioselectivities of L-valine diamide and permethylated b-cyclodextrin in one gas chromatographic chiral stationary phase Levkin, P.A., Levkina, A., Schurig, V., 2006. Analytical Chemistry 78, 5143–5148. Separation of aromatic and aliphatic hydrocarbons with ionic liquids Meindersma, G.W., Podt, A.J.G., Klaren, M.B., de Haan, A.B., 2006. Chemical Engineering Communications 193, 1384– 1396. Alkylphenol retention indices Mjøs, S.A., Meier, S., Boitsov, S., 2006. Journal of Chromatography A 1123, 98–105.
doi:10.1016/j.orggeochem.2006.08.001
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Geochemistry Articles / Organic Geochemistry 37 (2006) I–XIV
b-Cyclodextrin as a stationary phase for the group separation of polycyclic aromatic compounds in normal-phase liquid chromatography Panda, S.K., Schrader, W., Andersson, J.T., 2006. Journal of Chromatography A 1122, 88–96. Ultra fast GC method for the analysis of total petroleum hydrocarbons (TPH) in water and soils, in compliance with Texas TNRCC Method 1005 Pelagatti, S., Facchetti, R., Cadoppi, A., 2006. LC/GC North America 24, 35. Characterization of compositional changes in vacuum gas oil distillation cuts by electrospray ionization Fourier transform-ion cyclotron resonance (FT-ICR) mass spectrometry Stanford, L.A., Kim, S., Rodgers, R.P., Marshall, A.G., 2006. Energy & Fuels 20, 1664–1673. Fast, comprehensive online two-dimensional high performance liquid chromatography through the use of high temperature ultra-fast gradient elution reversed-phase liquid chromatography Stoll, D.R., Cohen, J.D., Carr, P.W., 2006. Journal of Chromatography A 1122, 123–137. Multiplexed rectilinear ion trap mass spectrometer for high-throughput analysis Tabert, A.M., Goodwin, M.P., Duncan, J.S., Fico, C.D., Cooks, R.G., 2006. Analytical Chemistry 78, 4830–4838. NMR diffusion measurements in complex mixtures using constant-time-HSQC-IDOSY and computer-optimized spectral aliasing for high resolution in the carbon dimension Vitorge, B., Jeanneat, D., 2006. Analytical Chemistry 78, 5601–5606. Archaeological/Art Organic Chemistry Isotope sourcing of prehistoric willow and tule textiles recovered from western Great Basin rock shelters and caves – proof of concept Benson, L.V., Hattori, E.M., Taylor, H.E., Poulson, S.R., Jolie, E.A., 2006. Journal of Archaeological Science 33, 1588– 1599. Sulphur isotope variation in archaeological marine fauna from northern Europe Craig, O.E., Ross, R., Andersen, S.H., Milner, N., Bailey, G.N., 2006. Journal of Archaeological Science 33, 1642– 1646. Climate deterioration and land-use change in the first millennium BC: Perspectives from the British palynological record Dark, P., 2006. Journal of Archaeological Science 33, 1381–1395. Genetic analysis of archaeological wood remains: First results and prospects Deguilloux, M.F., Bertel, L., Celant, A., Pemonge, M.H., Sadori, L., Magri, D., Petit, R.J., 2006. Journal of Archaeological Science 33, 1216–1227. Study of the influencing effect of pigments on the photoageing of terpenoid resins used as pictorial media Dome´nech-Carbo´, M.T., Kuckova, S., de la Cruz-Can˜izares, J., Osete-Cortina, L., 2006. Journal of Chromatography A 1121, 248–258. Study of the microbiodegradation of terpenoid resin-based varnishes from easel painting using pyrolysis–gas chromatography– mass spectrometry and gas chromatography–mass spectrometry Dome´nech-Carbo´, M.T., Osete-Cortina, L., de la Cruz Can˜izares, J., Bolı´var-Galiano, F., Romero-Noguera, J., Ferna´ndez-Vivas, M.A., Martı´n-Sa´nchez, I., 2006. Analytical and Bioanalytical Chemistry 385, 1265–1280. A palaeodietary investigation of carbon (13C/12C) and nitrogen (15N/14N) in human and faunal bones from the Copper Age cemeteries of Varna I and Durankulak, Bulgaria Honch, N.V., Higham, T.F.G., Chapman, J., Gaydarska, B., Hedges, R.E.M., 2006. Journal of Archaeological Science 33, 1493–1504.
Geochemistry Articles / Organic Geochemistry 37 (2006) I–XIV
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Stable isotopic analysis of human bones from Jiahu site, Henan, China: Implications for the transition to agriculture Hu, Y., Ambrose, S.H., Wang, C., 2006. Journal of Archaeological Science 33, 1319–1330. Stable isotopic evidence of diet in a Greek colonial population from the Black Sea Keenleyside, A., Schwarcz, H., Panayotova, K., 2006. Journal of Archaeological Science 33, 1205–1215. Two cases of leprosy from Zatec (Bohemia), dated to the turn of the 12th century and confirmed by DNA analysis for Mycobacterium leprae ´ , V., Cech, Likovsky´, J., Urbanova´, M., Ha´jek, M., Cerny P., 2006. Journal of Archaeological Science 33, 1276– 1283. A new Palaeolithic discovery: tar-hafted stone tools in a European Mid-Pleistocene bone-bearing bed Mazza, P.P.A., Martini, F., Sala, B., Magi, M., Colombini, M.P., Giachi, G., Landucci, F., Lemorini, C., Modugno, F., Ribechini, E., 2006. Journal of Archaeological Science 33, 1310–1318. Analysis of protein-based binding media found in paintings using laser induced fluorescence spectroscopy Nevin, A., Cather, S., Anglos, D., Fotakis, C., 2006. Analytica Chimica Acta 573–574, 341–346. Variable nucleotide tandem repeat (VNTR) typing of two palaeopathological cases of lepromatous leprosy from Mediaeval England Taylor, G.M., Watson, C.L., Bouwman, A.S., Lockwood, D.N.J., Mays, S.A., 2006. Journal of Archaeological Science 33, 1569–1579. Pitfalls in drying oils identification in art objects by gas chromatography Tsakalof, A.K., Bairachtari, K.A., Chryssoulakis, I.D., 2006. Journal of Separation Science 29, 1642–1646. Dietary patterns during the late prehistoric/historic period in Cikobia island (Fiji): Insights from stable isotopes and dental pathologies Valentin, F., Bocherens, H., Gratuze, B., Sand, C., 2006. Journal of Archaeological Science 33, 1396–1410.
Astrobiology Microbial signatures in sabkha evaporite deposits of Chott el Gharsa (Tunisia) and their astrobiological implications Barbieri, R., Stivaletta, N., Marinangeli, L., Ori, G.G., 2006. Planetary and Space Science 54, 726–736. Monocyanopolyynes from a carbon arc in ammonia: About the relative abundance of polyynes series formed in a carbon arc and those detected in the circumstellar shells of AGB stars Cataldo, F., 2006. International Journal of Astrobiology 5, 37–45. The sulphur dilemma: Are there biosignatures on Europa’s icy and patchy surface? Chela-Flores, J., 2006. International Journal of Astrobiology 5, 17–22. Spectral analyses of sabkha sediments with implications for remote sensing on Mars Howari, F.M., 2006. International Journal of Astrobiology 5, 47–56. The red rain phenomenon of Kerala and its possible extraterrestrial origin Louis, G., Kumar, A.S., 2006. Astrophysics and Space Science 302, 175–187. The potential for prebiotic chemistry in the possible cryovolcanic dome Ganesa Macula on Titan Neish, C.D., Lorenz, R.D., O’Brien, D.P., 2006. International Journal of Astrobiology 5, 57–65. How do microorganisms reach the stratosphere? Wainwright, M., Alharbi, S., Wickramasinghe, N.C., 2006. International Journal of Astrobiology 5, 13–15.
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Geochemistry Articles / Organic Geochemistry 37 (2006) I–XIV
Bugbuster – survivability of living bacteria upon shock compression Willis, M.J., Ahrens, T.J., Bertani, L.E., Nash, C.Z., 2006. Earth and Planetary Science Letters 247, 185–196.
Biochemistry Importance of transcription factors in the regulation of plant secondary metabolism and their relevance to the control of terpenoid accumulation Broun, P., Liu, Y., Queen, E., Schwarz, Y., Abenes, M., Leibman, M., 2006. Phytochemistry Reviews 5, 27–38. Mining fatty acid databases for detection of novel compounds in aerobic bacteria Dawyndt, P., Vancanneyt, M., Snauwaert, C., De Baets, B., De Meyer, H., Swings, J., 2006. Journal of Microbiological Methods 66, 410–433. Natural neo acids and neo alkanes: Their analogs and derivatives Dembitsky, V.M., 2006. Lipids 41, 309–340. Terpenoids from marine organisms: Unique structures and their pharmacological potential Gross, H., Ko¨nig, G., 2006. Phytochemistry Reviews 5, 115–141. Acetate oxidation: is the dominant methanogenic pathway from acetate in the absence of Methanosaetaceae Karakashev, D., Batstone, D.J., Trably, E., Angelidaki, I., 2006. Applied and Environmental Microbiology 72, 5138– 5141. Farnesyl diphosphate synthase. A paradigm for understanding structure and function relationships in E-polyprenyl diphosphate synthases Poulter, C., 2006. Phytochemistry Reviews 5, 17–26. Early steps in isoprenoid biosynthesis: Multilevel regulation of the supply of common precursors in plant cells Rodrı´guez-Concepcio´n, M., 2006. Phytochemistry Reviews 5, 1–15. Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations Sullivan, M.B., Coleman, M.L., Weigele, P., Rohwer, F., Chisholm, S.W., 2005. PLoS Biology 3, e144. Occurrence, phylogeny and evolution of ribulose-1,5-bisphosphate carboxylase/oxygenase genes in obligately chemolithoautotrophic sulfur-oxidizing bacteria of the genera Thiomicrospira and Thioalkalimicrobium Tourova, T.P., Spiridonova, E.M., Berg, I.A., Kuznetsov, B.B., Sorokin, D.Y., 2006. Microbiology 152, 2159– 2169. Biodegradation Lignite degradation and mineralization in lignite-containing mine sediment as revealed by 14C activity measurements and molecular analysis Chabbi, A., Rumpel, C., Grootes, P.M., Gonza´lez-Pe´rez, J.A., Delaune, R.D., Gonzalez-Vila, F., Nixdorf, B., Huttl, R.F., 2006. Organic Geochemistry 37, 957–976. Removal and biodegradation of polycyclic aromatic hydrocarbons by Selenastrum capricornutum Chan, S.M.N., Luan, T., Wong, M.H., Tam, N.F.Y., 2006. Environmental Toxicology and Chemistry 25, 1772–1779. The role of indigenous bacterial and fungal soil populations in the biodegradation of crude oil in a desert soil Embar, K., Forgacs, C., Sivan, A., 2006. Biodegradation 17, 369–377. Oxygen-uptake and mass-transfer rates on the growth of Pseudomonas utida CECT5279: Influence on biodesulfurization (BDS) capability Gomez, E., Santos, V.E., Alcon, A., Martin, A.B., Garcia-Ochoa, F., 2006. Energy & Fuels 20, 1565–1571.
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Multisubstrate biodegradation kinetics for binary and complex mixtures of polycyclic aromatic hydrocarbons Knightes, C.D., Peters, C.A., 2006. Environmental Toxicology and Chemistry 25, 1746–1756. Biodegradation by members of the genus Rhodococcus: Biochemistry, physiology, and genetic adaptation Larkin, M.J., Kulakov, L.A., Allen, C.C.R., 2006. In: Laskin, A.I., Sariaslani, S., Gadd, G.M. (Eds.), Advances in Applied Microbiology, vol. 59, Academic Press, pp. 1–29. Characterization of hexane biodegradation by Rhodococcus sp. EH741 Lee, E.H., Cho, K.S., 2006. Journal of the Korean Society of Environmental Engineers 28, 144–149.
Biodegradation pathways/genomics Molecular characterization of cytochrome P450 genes in the polycyclic aromatic hydrocarbon degrading Mycobacterium vanbaalenii PYR-1 Brezna, B., Kweon, O., Stingley, R., Freeman, J., Khan, A., Polek, B., Jones, R., Cerniglia, C., 2006. Applied Microbiology and Biotechnology 71, 522–532.
Differential gene expression in response to phenol and catechol reveals different metabolic activities for the degradation of aromatic compounds in Bacillus subtilis Tam, L.T., Eymann, C., Albrecht, D., Sietmann, R., Schauer, F., Hecker, M., Antelmann, H., 2006. Environmental Microbiology 8, 1408–1427.
Biogeochemistry Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms Gorby, Y.A., Yanina, S., McLean, J.S., Rosso, K.M., Moyles, D., Dohnalkova, A., Beveridge, T.J., Chang, I.S., Kim, B.H., Kim, K.S., Culley, D.E., Reed, S.B., Romine, M.F., Saffarini, D.A., Hill, E.A., Shi, L., Elias, D.A., Kennedy, D.W., Pinchuk, G., Watanabe, K., Ishii, S.i., Logan, B., Nealson, K.H., Fredrickson, J.K., 2006. Proceedings of the National Academy of Sciences USA 103, 11358–11363. Reductive biotransformation of Fe in shale-limestone saprolite containing Fe(III) oxides and Fe(II)/Fe(III) phyllosilicates Kukkadapu, R.K., Zachara, J.M., Fredrickson, J.K., McKinley, J.P., Kennedy, D.W., Smith, S.C., Dong, H., 2006. Geochimica et Cosmochimica Acta 70, 3662–3676. Bioaccumulation of gold by sulfate-reducing bacteria cultured in the presence of gold(I)-thiosulfate complex Lengke, M., Southam, G., 2006. Geochimica et Cosmochimica Acta 70, 3646–3661. Molecular models of alginic acid: Interactions with calcium ions and calcite surfaces Perry IV, T.D., Cygan, R.T., Mitchell, R., 2006. Geochimica et Cosmochimica Acta 70, 3508–3532. Biomineralization of gold: Biofilms on bacterioform gold Reith, F., Rogers, S.L., McPhail, D.C., Webb, D., 2006. Science 313, 233–236. Molecular simulation of humic substance – Ca-montmorillonite complexes Sutton, R., Sposito, G., 2006. Geochimica et Cosmochimica Acta 70, 3566–3581. Structural model for the biogenic Mn oxide produced by Pseudomonas putida Villalobos, M., Lanson, B., Manceau, A., Toner, B., Sposito, G., 2006. American Mineralogist 91, 489–502. Modeling biogeochemical cycles in Chesapeake Bay with a coupled physical-biological model Xu, J., Hood, R.R., 2006. Estuarine, Coastal and Shelf Science 69, 19–46.
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Geochemistry Articles / Organic Geochemistry 37 (2006) I–XIV
Carbon Cycle/Sequestration Combined hydrogen production and storage with subsequent carbon crystallization Lueking, A.D., Gutierrez, H.R., Fonseca, D.A., Narayanan, D.L., Van Essendelft, D., Jain, P., Clifford, C.E.B., 2006. Journal of the American Chemical Society 128, 7758–7760. On leakage and seepage of CO2 from geologic storage sites into surface water Oldenburg, C., Lewicki, J., 2006. Environmental Geology 50, 691–705.
Coal/Peat/Lignite Geochemistry Analytical and characterization studies of organic and inorganic species in brown coal Domazetis, G., Raoarun, M., James, B.D., Liesegang, J., Pigram, P.J., Brack, N., Glaisher, R., 2006. Energy & Fuels 20, 1556–1564. Organic facies and palynofacies: Nomenclature, classification and applicability for petroleum source rock evaluation Ercegovac, M., Kostic, A., 2006. International Journal of Coal Geology 68, 70–78. Methane/CO2 sorption modeling for coalbed methane production and CO2 sequestration Harpalani, S., Prusty, B.K., Dutta, P., 2006. Energy & Fuels 20, 1591–1599. Petrology and chemistry of Permian coals from the Parana Basin: 1. Santa Terezinha, Leao-Butia and Candiota Coalfields, Rio Grande do Sul, Brazil Kalkreuth, W., Holz, M., Kern, M., Machado, G., Mexias, A., Silva, M.B., Willett, J., Finkelman, R., Burger, H., 2006. International Journal of Coal Geology 68, 79–116. Effect of noncovalent bonds on the thermal extraction of subbituminous coals Kashimura, N., Takanohashi, T., Saito, I., 2006. Energy & Fuels 20, 1605–1608. Cosmochemistry Free dicarboxylic and aromatic acids in the carbonaceous chondrites Murchison and Orgueil Martins, Z., Watson, J.S., Sephton, M.A., Botta, O., Ehrenfreund, P., Gilmour, I., 2006. Meteoritics & Planetary Science 41, 1073–1080.
Environmental Geochemistry Bioremediation of hydrocarbon-contaminated polar soils Aislabie, J., Saul, D., Foght, J., 2006. Extremophiles 10, 171–179. Optimization of microwave-assisted extraction of polycyclic aromatic hydrocarbons from sediments Bangkedphol, S., Sakultantimetha, A., Keenan, H.E., Songsasen, A., 2006. Journal of Environmental Science and Health Part A – Toxic Hazardous Substances and Environmental Engineering 41, 1105–1116. Anthropogenic markers in the Holocene stratigraphic sequence of the Gulf of Trieste (northern Adriatic Sea) Covelli, S., Fontolan, G., Faganeli, J., Ogrinc, N., 2006. Marine Geology 230, 29–51. A study of polycyclic aromatic hydrocarbons concentrations and source identifications by methods of diagnostic ratio and principal component analysis at Taichung chemical Harbor near Taiwan Strait Fang, G.-C., Wu, Y.-S., Chang, C.-N., Ho, T.-T., 2006. Chemosphere 64, 1233–1242. Characterization of oil spills in the environment using parallel factor multiway analysis Gaganis, V., Pasadakis, N., 2006. Analytica Chimica Acta 573–574, 328–332.
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A laboratory evaluation of the sorption of oil sands naphthenic acids on organic rich soils Janfada, A., Headley, J.V., Peru, K.M., Barbour, S.L., 2006. Journal of Environmental Science and Health Part A – Toxic Hazardous Substances and Environmental Engineering 41, 985–998. C4 plant isotopic composition (d13C) evidence for urban CO2 pollution in the city of Cotonou, Benin (West Africa) Ke`lome´, N.C., Le´veˆque, J., Andreux, F., Milloux, M.-J., Oye´de´, L.-M., 2006. Science of the Total Environment 366, 439– 447. An automated extraction approach for isolation of 24 polyaromatic hydrocarbons (PAHs) from various marine matrixes Liguori, L., Heggstad, K., Hove, H.T., Julshamn, K., 2006. Analytica Chimica Acta 573–574, 181–188. Sources of hydrocarbons in sediments of the Bay of Fort de France (Martinique) Mille, G., Guiliano, M., Asia, L., Malleret, L., Jalaluddin, N., 2006. Chemosphere 64, 1062–1073. Transformations of dissolved organic matter in a landfill leachate – A size exclusion chromatography/mass spectrometric approach Persson, L., Alsberg, T., Ledin, A., Odham, G., 2006. Chemosphere 64, 1093–1099. Ecological and geochemical investigations in the Ob estuary at sites of hydrocarbon exploration drilling Stepanets, O., Komarevsky, V., Ligaev, A., Sochnev, O., 2006. Geochemistry International 44, 704–714. Distribution and sources of hydrocarbons in surface sediments of Gemlik Bay (Marmara Sea, Turkey) ¨ nlu¨, S., Alpar, B., 2006. Chemosphere 64, 764–777. U Investigation on bioremediation of oil-polluted wetland at Liaodong Bay in northeast China Ye, S., Huang, L., Li, Y., Ding, M., Hu, Y., Ding, D., 2006. Applied Microbiology and Biotechnology 71, 543–548.
Evolution/Paleontology/Palynology Cultivated Beggiatoa spp. define the phylogenetic root of morphologically diverse, noncultured, vacuolate sulfur bacteria Ahmad, A., Kalanetra, K.M., Nelson, D.C., 2006. Canadian Journal of Microbiology 52, 591–598. 16S rRNA phylogenetic investigation of the candidate division ‘‘Korarchaeota’’ Auchtung, T.A., Takacs-Vesbach, C.D., Cavanaugh, C.M., 2006. Applied and Environmental Microbiology 72, 5077– 5082. Isotopic discrimination of resource partitioning among ungulates in C3-dominated communities from the Miocene of Florida and California Feranec, R.S., MacFadden, B.J., 2006. Paleobiology 32, 191–205. Molecular evidence for deep evolutionary roots of bilaterality in animal development Matus, D.Q., Pang, K., Marlow, H., Dunn, C.W., Thomsen, G.H., Martindale, M.Q., 2006. Proceedings of the National Academy of Sciences USA 103, 11195–11200. The Vendian (Ediacaran) in the geological record: Enigmas in geology’s prelude to the Cambrian explosion McCall, G.J.H., 2006. Earth-Science Reviews 77, 1–229. High-fidelity organic preservation of bone marrow in ca. 10 Ma amphibians McNamara, M.E., Orr, P.J., Kearns, S.L., Alcala´, L., Anado´n, P., Pen˜alver-Molla´, E., 2006. Geology 34, 641–644. Rapid Asia–Europe–North America geographic dispersal of earliest Eocene primate Teilhardina during the Paleocene-Eocene Thermal Maximum Smith, T., Rose, K.D., Gingerich, P.D., 2006. Proceedings of the National Academy of Sciences USA 103, 11223– 11227.
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Geochemistry Articles / Organic Geochemistry 37 (2006) I–XIV
Evolution: Origins of Life/Microbial Genomics Particle separation and concentration in natural systems Atencio, A., 2006. International Journal of Astrobiology 5, 23–36. Nanophase iron oxides as a key ultraviolet sunscreen for ancient photosynthetic microbes Bishop, J.L., Louris, S.K., Rogoff, D.A., Rothschild, L.J., 2006. International Journal of Astrobiology 5, 1–12. Origins and evolution of the recA/RAD51 gene family: Evidence for ancient gene duplication and endosymbiotic gene transfer Lin, Z., Kong, H., Nei, M., Ma, H., 2006. Proceedings of the National Academy of Sciences USA 103, 10328–10333. Collective evolution and the genetic code Vetsigian, K., Woese, C., Goldenfeld, N., 2006. Proceedings of the National Academy of Sciences USA 103, 10696–10701.
Fluid Inclusions Estimation of volume fractions of liquid and vapor phases in fluid inclusions, and definition of inclusion shapes Bakker, R.J., Diamond, L.W., 2006. American Mineralogist 91, 635–657. Detection of water in petroleum inclusions and its implications Cao, J., Yao, S., Hu, W., Zhang, Y., Wang, X., Zhang, Y., Tang, Y., 2006. Chinese Science Bulletin 51, 1501–1507. P–V–T relationships and mineral equilibria in inclusions in minerals Guiraud, M., Powell, R., 2006. Earth and Planetary Science Letters 244, 683–694.
Geology Hydrates Stabilizing of methane hydrate and transition to a new high-pressure structure at 40 GPa Hirai, H., Machida, S.-i., Kawamura, T., Yamamoto, Y., Yagi, T., 2006. American Mineralogist 91, 826–830. Microbial methane and ethane from gas hydrate nodules of the Makassar Strait, Indonesia Sassen, R., Curiale, J.A., 2006. Organic Geochemistry 37, 977–980. A finite element computational method for gas hydrate. Part I: Theory Scott, D., Das, D., Subbaihaannadurai, V., 2006. Petroleum Science and Technology 24, 895–909. A finite element computational method for gas hydrate. Part II: Application Scott, D., Das, D., Subbaihaannadurai, V., 2006. Petroleum Science and Technology 24, 911–922.
Isotope Geochemistry Memory effect in deuterium analysis by continuous flow isotope ratio measurement Olsen, J., Seierstad, I., Vinther, B., Johnsen, S., Heinemeier, J., 2006. International Journal of Mass Spectrometry 254, 44– 52. Iron isotopes in the early marine diagenetic iron cycle Staubwasser, M., von Blanckenburg, F., Schoenberg, R., 2006. Geology 34, 629–632. Effects of element sulfur on carbon isotopic fractionation of methane Tianzhu, L., Gengxin, Z., Junli, Q., 2006. Shiyou shiyan Dizhi (Petroleum Geology and Experiment) 28, 173–176.
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Stable isotopes as one of nature’s ecological recorders West, J.B., Bowen, G.J., Cerling, T.E., Ehleringer, J.R., 2006. Trends in Ecology & Evolution 21, 408–414.
Microbiology/Extremophiles – Microbial Ecology Bacterial diversity of a cyanobacterial mat degrading petroleum compounds at elevated salinities and temperatures Abed, R.M.M., Al-Thukair, A., de Beer, D., 2006. FEMS Microbiology Ecology 57, 290–301. Isolation of a novel acidiphilic methanogen from an acidic peat bog Brduer, S.L., Cadillo-Quiroz, H., Yashiro, E., Yavitt, J.B., Zinder, S.H., 2006. Nature 442, 192–194. Characterization of acid-tolerant H2/CO2-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State Brduer, S.L., Yashiro, E., Ueno, N.G., Yavitt, J.B., Zinder, S.H., 2006. FEMS Microbiology Ecology 57, 206–216. Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA Cadillo-Quiroz, H., Brduer, S., Yashiro, E., Sun, C., Yavitt, J., Zinder, S., 2006. Environmental Microbiology 8, 1428– 1440. Thermovirga lienii gen. nov., sp. nov., a novel moderately thermophilic, anaerobic, amino-acid-degrading bacterium isolated from a North Sea oil well Dahle, H., Birkeland, N.-K., 2006. International Journal of Systematic and Evolutionary Microbiology 56, 1539– 1545. Simulating the contribution of coaggregation to interspecies hydrogen fluxes in syntrophic methanogenic consortia Ishii, S.i., Kosaka, T., Hotta, Y., Watanabe, K., 2006. Applied and Environmental Microbiology 72, 5093–5096. Two novel bacteriophages of thermophilic bacteria isolated from deep-sea hydrothermal fields Liu, B., Wu, S., Song, Q., Zhang, X., Xie, L., 2006. Current Microbiology 53, 163–166. Evidence of the activity of dissimilatory sulfate-reducing prokaryotes in nonsulfidogenic tropical mobile muds Madrid, V.M., Aller, R.C., Aller, J.Y., Chistoserdov, A.Y., 2006. FEMS Microbiology Ecology 57, 169–181. Evidence for existence of ‘‘Mesotogas,’’ members of the order Thermotogales adapted to low-temperature environments Nesbo, C.L., Dlutek, M., Zhaxybayeva, O., Doolittle, W.F., 2006. Applied and Environmental Microbiology 72, 5061– 5068. Vertical distribution and diversity of bacteria and archaea in sulfide and methane-rich cold seep sediments located at the base of the Florida Escarpment Reed, A., Lutz, R., Vetriani, C., 2006. Extremophiles 10, 199–211. A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents Reysenbach, A.-L., Liu, Y., Banta, A.B., Beveridge, T.J., Kirshtein, J.D., Schouten, S., Tivey, M.K., Von Damm, K.L., Voytek, M.A., 2006. Nature 442, 444–447. Acidophilic microbial communities associated with a natural, biodegraded hydrocarbon seepage Ro¨ling, W.F.M., Ortega-Lucach, S., Larter, S.R., Head, I.M., 2006. Journal of Applied Microbiology 101, 290–299. Stratified communities of active Archaea in deep marine subsurface sediments Sørensen, K.B., Teske, A., 2006. Applied and Environmental Microbiology 72, 4596–4603. Biogeographical distribution and ecological ranges of benthic cyanobacteria in East Antarctic lakes Taton, A., Grubisic, S., Balthasart, P., Hodgson, D.A., Laybourn-Parry, J., Wilmotte, A., 2006. FEMS Microbiology Ecology 57, 272–289.
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Geochemistry Articles / Organic Geochemistry 37 (2006) I–XIV
Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico Yan, T., Ye, Q., Zhou, J., Zhang, C.L., 2006. FEMS Microbiology Ecology 57, 251–259.
Paleoclimatology/Palaeoceanography Variations of organic carbon isotopic composition and its environmental significance during the last glacial on western Chinese Loess Plateau Chen, F., Rao, Z., Zhang, J., Jin, M., Ma, J., 2006. Chinese Science Bulletin 51, 1593–1602. Reconstructing grassland vegetation and paleotemperatures using carbon isotope ratios of bison tooth enamel Hoppe, K.A., Paytan, A., Chamberlain, P., 2006. Geology 34, 649–652. A major sulphur isotope event at c. 510 Ma: A possible anoxia-extinction-volcanism connection during the Early-Middle Cambrian transition? Hough, M.L., Shields, G.A., Evins, L.Z., Strauss, H., Henderson, R.A., Mackenzie, S., 2006. Terra Nova 18, 257–263. Stable isotope record in paleosol carbonates from the Chinese Loess Plateau: Implications for late Neogene paleoclimate and paleovegetation Kaakinen, A., Sonninen, E., Lunkka, J.P., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 237, 359–369. A stable isotope aridity index for terrestrial environments Levin, N.E., Cerling, T.E., Passey, B.H., Harris, J.M., Ehleringer, J.R., 2006. Proceedings of the National Academy of Sciences USA 103, 11201–11205. Investigating microbial micro-habitat structure using X-ray computed tomography Nunan, N., Ritz, K., Rivers, M., Feeney, D.S., Young, I.M., 2006. Geoderma 133, 398–407. South Tasman Sea alkenone palaeothermometry over the last four glacial/interglacial cycles Pelejero, C., Calvo, E., Barrows, T.T., Logan, G.A., De Deckker, P., 2006. Marine Geology 230, 73–86. Effect of changes in d18O content of the surface ocean on estimated sea surface temperatures in past warm climate Roche, D.M., Donnadieu, Y., Puce´at, E., Paillard, D., 2006. Paleoceanography 21, Citation No. PA2023. Abrupt tropical climate change: Past and present Thompson, L.G., Mosley-Thompson, E., Brecher, H., Davis, M., Leon, B., Les, D., Lin, P.-N., Mashiotta, T., Mountain, K., 2006. Proceedings of the National Academy of Sciences USA 103, 10536–10543.
Paleoecology of Extinction Events Rapid vertebrate recuperation in the Karoo Basin of South Africa following the End-Permian extinction Botha, J., Smith, R.M.H., 2006. Journal of African Earth Sciences 45, 502–514. Carbon isotope excursions and microfacies changes in marine Permian-Triassic boundary sections in Hungary Haas, J., DDeme´ny, A., Hips, K., Vennemann, T.W., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 237, 160– 181.
Precambrian Geochemistry The structure and distribution of carbon in 3.5 Ga Apex chert: Implications for the biogenicity of Earth’s oldest putative microfossils De Gregorio, B.T., Sharp, T.G., 2006. American Mineralogist 91, 784–789.
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Archean and Proterozoic ministromatolites: Taxonomic composition of successive assemblages Raaben, M.E., 2005. Stratigraphy and Geological Correlation (Stratigrafiya, Geologicheskaya Korrelyatsiya) 13, 367–379. A new discovery of macroscopic fossils from the Ediacaran Doushantuo Formation in the Yangtze Gorges area Tang, F., Yin, C., Liu, Y., Wang, Z., Liu, P., Gao, L., 2006. Chinese Science Bulletin 51, 1487–1493.
Petroleum/Source Rock Geochemistry Comparison of hydrocarbons formed at pyrolysis of Turkish type I kerogen (Go¨ynu¨k) and type II kerogen (Beypazari) Ballice, L., Reimert, R., 2005. Oil Shale 22, 317–332. Chemical fingerprinting of algaenans using RuO4 degradation Blokker, P., van den Ende, H., de Leeuw, J.W., Versteegh, G.J.M., Sinninghe Damste´, J.S., 2006. Organic Geochemistry 37, 871–881. On the problem of the formation and geochemical role of bituminous matter in pegmatites of the Khibiny and Lovozero alkaline massifs, Kola Peninsula, Russia Chukanov, N., Pekov, I., Sokolov, S., Nekrasov, A., Ermolaeva, V., Naumova, I., 2006. Geochemistry International 44, 715–728. Thermodynamic modelling of petroleum fluids de Hemptinne, J.C., Be´har, E., 2006. Oil & Gas Science and Technology – Revue de l’Institut Franc¸ais du Pe´trole 61, 303– 317. From petroleum-type organofacies to hydrocarbon phase prediction di Primio, R., Horsfield, B., 2006. American Association of Petroleum Geologists Bulletin 90, 1031–1058. Basin architecture and petroleum system of Krishna Godavari Basin, east coast of India Gupta, S.K., 2006. The Leading Edge 25, 830–837. Petroleum migration, faults and overpressure. Part I: Calibrating basin modelling using petroleum in traps – A review Karlsen, D.A., Skeie, J.E., 2006. Journal of Petroleum Geology 29, 227–256. Predicting the timing and characteristics of petroleum formation using tar mats and petroleum asphaltenes: A case study from the northern North Sea Keym, M., Dieckmann, V., 2006. Journal of Petroleum Geology 29, 273–296. Kinetic modeling of individual gaseous component formed from coal in a confined system Shuai, Y., Peng, P.a., Zou, Y.-R., Zhang, S., 2006. Organic Geochemistry 37, 932–943. Biogeochemical evidence for the presence of the angiosperm molecular fossil oleanane in Paleozoic and Mesozoic nonangiospermous fossils Taylor, D.W., Li, H., Dahl, J., Fago, F.J., Zinniker, D., Moldowan, J.M., 2006. Paleobiology 32, 179–190. Experimental study to confirm the existence of hydrocarbon under high pressure and temperature of deep lithosphere Wang, C., Du, J., Wang, W., Xie, H., Chen, G., Duan, Y., Zhou, X., 2006. Chinese Science Bulletin 51, 1633–1638. Identification and significance of 3b-alkyl steranes in the Eogene lacustrine sediments and petroleum of China Wang, G., Zhang, L., Wang, T., 2006. Chinese Science Bulletin 51, 1628–1632. Diamondoids and molecular biomarkers generated from modern sediments in the absence and presence of minerals during hydrous pyrolysis Wei, Z., Moldowan, J.M., Paytan, A., 2006. Organic Geochemistry 37, 891–911.
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Production/Engineering Geochemistry Diffusivity of asphaltene molecules by fluorescence correlation spectroscopy Andrews, A.B., Guerra, R.E., Mullins, O.C., Sen, P.N., 2006. Journal of Physical Chemistry A 110, 8093– 8097. Optical fiber extrinsic refractometer to measure RI of samples in a high pressure and temperature system: Application to wax and asphaltene precipitation measurements Castillo, J., Canelo´n, C., Acevedo, S., Carrier, H., Daridon, J.-L., 2006. Fuel 85, 2220–2228. Downhole separation of petroleum fluids Khan, M.M., Islam, M.R., 2006. Petroleum Science and Technology 24, 789–805. Certain relationships between chemical composition and properties of petroleum asphalts from different origin Oyekunle, L.O., 2006. Oil & Gas Science and Technology – Revue de l’Institut Franc¸ais du Pe´trole 61, 433–441. Characterisation of asphaltenes and modelling of flocculation – state of the art Pina, A., Mougin, P., Be´har, E., 2006. Oil & Gas Science and Technology – Revue de l’Institut Franc¸ais du Pe´trole 61, 319–343. Breaking of water-in-crude oil emulsions. 1. Physicochemical phenomenology of demulsifier action Rondo´n, M., Bouriat, P., Lachaise, J., Salager, J.-L., 2006. Energy & Fuels 20, 1600–1604. Langmuir films of bitumen at oil/water interfaces Solovyev, A., Zhang, L.Y., Xu, Z., Masliyah, J.H., 2006. Energy & Fuels 20, 1572–1578. Applications of molecular simulation in oil and gas production and processing Ungerer, P., Lachet, V., Tavitian, B., 2006. Oil & Gas Science and Technology – Revue de l’Institut Franc¸ais du Pe´trole 61, 387–403. Study of pressure and temperature effects on asphaltene stability in presence of CO2 Verdier, S., Carrier, H., Andersen, S.I., Daridon, J.-L., 2006. Energy & Fuels 20, 1584–1590. Wettability alterations due to crude oil composition and an anionic surfactant in petroleum reservoirs Xu, W., Ayirala, S., Rao, D., 2006. Journal of Adhesion Science and Technology 20, 693–704.
Recent Sediments/Hydrosphere Stoichiometry of the degradation of dissolved and particulate biogenic organic matter in the NW Iberian upwelling ´ lvarez-Salgado, X.A., Nieto-Cid, M., Gago, J., Brea, S., Castro, C.G., Doval, M.D., Pe´rez, F.F., 2006. Journal of A Geophysical Research – Oceans 111, Citation No. C07017. Biological and geochemical record of anthropogenic impacts in Recent sediments from Lake Pupuke, Auckland City, New Zealand Augustinus, P., Reid, M., Andersson, S., Deng, Y., Horrocks, M., 2006. Journal of Paleolimnology 35, 789–805. An optimised method for the extraction and analysis of lipid biomarkers from stalagmites Blyth, A.J., Farrimond, P., Jones, M., 2006. Organic Geochemistry 37, 882–890. Spatial variability of stable isotopes and fossil pigments in surface sediments of Alaskan coastal lakes: Constraints on quantitative estimates of past salmon abundance Brock, C.S., Leavitt, P.R., Schindler, D.E., Johnson, S.P., Moore, J.W., 2006. Limnology and Oceanography 51, 1637– 1647.
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Bioenergetic controls on anaerobic oxidation of methane (AOM) in coastal marine sediments: A theoretical analysis Dale, A.W., Regnier, P., Van Cappellen, P., 2006. American Journal of Science 306, 246–294. Biomarker analysis of microbial diversity in sediments of a saline groundwater seep of Salt Basin, Nebraska Fang, J., Chan, O., Joeckel, R.M., Huang, Y., Wang, Y., Bazylinski, D.A., Moorman, T.B., Ang Clement, B.J., 2006. Organic Geochemistry 37, 912–931. Oxygen production and carbon sequestration in an upwelling coastal margin Hales, B., Karp-Boss, L., Perlin, A., Wheeler, P.A., 2006. Global Biogeochemical Cycles 20, Citation No. GB3001. Natural product biomarkers as indicators of sources and transport of sedimentary organic matter in a subtropical river Jaffe´, R., Rushdi, A.I., Medeiros, P.M., Simoneit, B.R.T., 2006. Chemosphere 64, 1870–1884. Modeling vertical excursions of the redox boundary in sediments: Application to deep basins of the Arctic Ocean Katsev, S., Sundby, B., Mucci, A., 2006. Limnology and Oceanography 51, 1581–1593. Variation in microbial biomass and community structure in sediments of Peter the Great Bay (Sea of Japan/East Sea), as estimated from fatty acid biomarkers Kim, K., Kim, Y.B., Park J.J., Nam, S.H., Park, K.-A., Chang, K.-I., 2005. Ocean Science Journal 40, 145–154. Relative importance of CO2 recycling and CH4 pathways in lake food webs along a dissolved organic carbon gradient Lennon, J.T., Faiia, A.M., Feng, X., Cottingham, K.L., 2006. Limnology and Oceanography 51, 1602–1613. Characterization of surface marine sediments from Rı´a de Arousa estuary according to extractable humic matter content Moreda-Pin˜eiro, A., Seco-Gesto, E.M., Bermejo-Barrera, A., Bermejo-Barrera, P., 2006. Chemosphere 64, 866–873. Fourier-transform infrared spectroscopy (FTIRS), a new method to infer past changes in tree-line position and TOC using lake sediment Rose´n, P., Persson, P., 2006. Journal of Paleolimnology 35, 913–923. Compositions and sources of extractable organic matter in Mesopotamian marshland surface sediments of Iraq. I: Aliphatic lipids Rushdi, A., DouAbul, A., Mohammed, S., Simoneit, B., 2006. Environmental Geology 50, 857–866. Photo-oxidation of dissolved organic matter in river water and its effect on trace element speciation Shiller, A.M., Duan, S., van Erp, P., Bianchi, T.S., 2006. Limnology and Oceanography 51, 1716–1728. Fate of peptidoglycan in an intertidal sediment: An in situ 13C-labeling study Veuger, B., van Oevelen, D., Boschker, H.T.S., Middelburg, J.J., 2006. Limnology and Oceanography 51, 1572–1580. Spatial variability in the coupling of organic carbon, nutrients, and phytoplankton pigments in surface waters and sediments of the Mississippi River plume Wysocki, L.A., Bianchi, T.S., Powell, R.T., Reuss, N., 2006. Estuarine, Coastal and Shelf Science 69, 47–63. Temporal variations of organic carbon inputs into the upper Yukon River: Evidence from fatty acids and their stable carbon isotopic compositions in dissolved, colloidal and particulate phases Zou, L., Sun, M.-Y., Guo, L., 2006. Organic Geochemistry 37, 944–956.
Seepage-Remote Detection Low d13C in tests of live epibenthic and endobenthic foraminifera at a site of active methane seepage Mackensen, A., Wollenburg, J., Licari, L., 2006. Paleoceanography 21, Citation No. PA2022.
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Detection and quantification of chemical plumes using a portable underwater membrane introduction mass spectrometer Short, R.T., Toler, S.K., Kibelka, G.P.G., Rueda Roa, D.T., Bell, R.J., Byrne, R.H., 2006. TrAC Trends in Analytical Chemistry 25, 637–646.
Soil Geochemistry Soil organic carbon and black carbon storage and dynamics under different fire regimes in temperate mixed-grass savanna Ansley, R.J., Boutton, T.W., Skjemstad, J.O., 2006. Global Biogeochemical Cycles 20, Citation No. GB3006. Fine roots vs. needles: A comparison of 13C and 15N dynamics in a Ponderosa pine forest soil Bird, J., Torn, M., 2006. Biogeochemistry 79, 361–382. Carbon and hydrogen isotope variation of plant biomarkers in a plant-soil system Chikaraishi, Y., Naraoka, H., 2006. Chemical Geology 231, 190–202. The functions and components of the Sourhope soil microbiota Griffiths, R.I., Bailey, M.J., McNamara, N.P., Whiteley, A.S., 2006. Applied Soil Ecology 33, 114–126. Humic substances in soils: Are they really chemically distinct? Kelleher, B.P., Simpson, A.J., 2006. Environmental Science & Technology 40, 4605–4611. Carbon and nitrogen stable isotopes in forest soils of Siberia Menyailo, O., Hungate, B., 2006. Doklady Earth Sciences 409, 747–749. Short- and long-term tannin induced carbon, nitrogen and phosphorus dynamics in Corsican pine litter Nierop, K., Verstraten, J., Tietema, A., Westerveld, J., Wartenbergh, P., 2006. Biogeochemistry 79, 275–296. Expanded compilations of references with abstracts in Microsoft Word and ISI EndNote formats are available at: http:// www.eaog.org/other/ref_update.html. Compiled by Clifford C. Walters
GEOCHEMISTRY ARTICLES – July 2006
Analytical Chemistry Recent developments in comprehensive two-dimensional gas chromatography (GC · GC): III. Applications for petrochemicals and organohalogens Adahchour, M., Beens, J., Vreuls, R.J.J., Brinkman, U.A.T., 2006. TrAC Trends in Analytical Chemistry 25, 726–741. Identification of three novel compounds in wine by means of a laboratory-constructed multidimensional gas chromatographic system Campo, E., Ferreira, V., Lo´pez, R., Escudero, A., Cacho, J., 2006. Journal of Chromatography A 1122, 202–208. Automated intensity descent algorithm for interpretation of complex high-resolution mass spectra Chen, L., Sze, S.K., Yang, H., 2006. Analytical Chemistry 78, 5006–5018. The separation of aromatics from olefins in petroleum samples using forte BPX90 DiFeo Jr., D., 2006. LC/GC North America 24, 50. Gas-liquid chromatographic study of thermodynamics of some alkanes on polysiloxane stationary phase El-Naggar, A.Y., 2006. Petroleum Science and Technology 24, 752–767. Analysis of nitro-polycyclic aromatic hydrocarbons in conventional diesel and Fischer-Tropsch diesel fuel emissions using electron monochromator-mass spectrometry Havey, C.D., McCormick, R.L., Hayes, R.R., Dane, A.J., Voorhees, K.J., 2006. Analytical Chemistry 78, 4894–4900. Identification of hydrotreatment-resistant heteroatomic species in a crude oil distillation cut by electrospray ionization FT-ICR mass spectrometry Klein, G.C., Rodgers, R.P., Marshall, A.G., 2006. Fuel 85, 2071–2080. Fatty Acid Analysis Tool (FAAT): An FT-ICR MS lipid analysis algorithm Leavell, M.D., Leary, J.A., 2006. Analytical Chemistry 78, 5497–5503. Combining the enantioselectivities of L-valine diamide and permethylated b-cyclodextrin in one gas chromatographic chiral stationary phase Levkin, P.A., Levkina, A., Schurig, V., 2006. Analytical Chemistry 78, 5143–5148. Separation of aromatic and aliphatic hydrocarbons with ionic liquids Meindersma, G.W., Podt, A.J.G., Klaren, M.B., de Haan, A.B., 2006. Chemical Engineering Communications 193, 1384– 1396. Alkylphenol retention indices Mjøs, S.A., Meier, S., Boitsov, S., 2006. Journal of Chromatography A 1123, 98–105.
doi:10.1016/j.orggeochem.2006.08.001
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b-Cyclodextrin as a stationary phase for the group separation of polycyclic aromatic compounds in normal-phase liquid chromatography Panda, S.K., Schrader, W., Andersson, J.T., 2006. Journal of Chromatography A 1122, 88–96. Ultra fast GC method for the analysis of total petroleum hydrocarbons (TPH) in water and soils, in compliance with Texas TNRCC Method 1005 Pelagatti, S., Facchetti, R., Cadoppi, A., 2006. LC/GC North America 24, 35. Characterization of compositional changes in vacuum gas oil distillation cuts by electrospray ionization Fourier transform-ion cyclotron resonance (FT-ICR) mass spectrometry Stanford, L.A., Kim, S., Rodgers, R.P., Marshall, A.G., 2006. Energy & Fuels 20, 1664–1673. Fast, comprehensive online two-dimensional high performance liquid chromatography through the use of high temperature ultra-fast gradient elution reversed-phase liquid chromatography Stoll, D.R., Cohen, J.D., Carr, P.W., 2006. Journal of Chromatography A 1122, 123–137. Multiplexed rectilinear ion trap mass spectrometer for high-throughput analysis Tabert, A.M., Goodwin, M.P., Duncan, J.S., Fico, C.D., Cooks, R.G., 2006. Analytical Chemistry 78, 4830–4838. NMR diffusion measurements in complex mixtures using constant-time-HSQC-IDOSY and computer-optimized spectral aliasing for high resolution in the carbon dimension Vitorge, B., Jeanneat, D., 2006. Analytical Chemistry 78, 5601–5606. Archaeological/Art Organic Chemistry Isotope sourcing of prehistoric willow and tule textiles recovered from western Great Basin rock shelters and caves – proof of concept Benson, L.V., Hattori, E.M., Taylor, H.E., Poulson, S.R., Jolie, E.A., 2006. Journal of Archaeological Science 33, 1588– 1599. Sulphur isotope variation in archaeological marine fauna from northern Europe Craig, O.E., Ross, R., Andersen, S.H., Milner, N., Bailey, G.N., 2006. Journal of Archaeological Science 33, 1642– 1646. Climate deterioration and land-use change in the first millennium BC: Perspectives from the British palynological record Dark, P., 2006. Journal of Archaeological Science 33, 1381–1395. Genetic analysis of archaeological wood remains: First results and prospects Deguilloux, M.F., Bertel, L., Celant, A., Pemonge, M.H., Sadori, L., Magri, D., Petit, R.J., 2006. Journal of Archaeological Science 33, 1216–1227. Study of the influencing effect of pigments on the photoageing of terpenoid resins used as pictorial media Dome´nech-Carbo´, M.T., Kuckova, S., de la Cruz-Can˜izares, J., Osete-Cortina, L., 2006. Journal of Chromatography A 1121, 248–258. Study of the microbiodegradation of terpenoid resin-based varnishes from easel painting using pyrolysis–gas chromatography– mass spectrometry and gas chromatography–mass spectrometry Dome´nech-Carbo´, M.T., Osete-Cortina, L., de la Cruz Can˜izares, J., Bolı´var-Galiano, F., Romero-Noguera, J., Ferna´ndez-Vivas, M.A., Martı´n-Sa´nchez, I., 2006. Analytical and Bioanalytical Chemistry 385, 1265–1280. A palaeodietary investigation of carbon (13C/12C) and nitrogen (15N/14N) in human and faunal bones from the Copper Age cemeteries of Varna I and Durankulak, Bulgaria Honch, N.V., Higham, T.F.G., Chapman, J., Gaydarska, B., Hedges, R.E.M., 2006. Journal of Archaeological Science 33, 1493–1504.
Geochemistry Articles / Organic Geochemistry 37 (2006) I–XIV
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Stable isotopic analysis of human bones from Jiahu site, Henan, China: Implications for the transition to agriculture Hu, Y., Ambrose, S.H., Wang, C., 2006. Journal of Archaeological Science 33, 1319–1330. Stable isotopic evidence of diet in a Greek colonial population from the Black Sea Keenleyside, A., Schwarcz, H., Panayotova, K., 2006. Journal of Archaeological Science 33, 1205–1215. Two cases of leprosy from Zatec (Bohemia), dated to the turn of the 12th century and confirmed by DNA analysis for Mycobacterium leprae ´ , V., Cech, Likovsky´, J., Urbanova´, M., Ha´jek, M., Cerny P., 2006. Journal of Archaeological Science 33, 1276– 1283. A new Palaeolithic discovery: tar-hafted stone tools in a European Mid-Pleistocene bone-bearing bed Mazza, P.P.A., Martini, F., Sala, B., Magi, M., Colombini, M.P., Giachi, G., Landucci, F., Lemorini, C., Modugno, F., Ribechini, E., 2006. Journal of Archaeological Science 33, 1310–1318. Analysis of protein-based binding media found in paintings using laser induced fluorescence spectroscopy Nevin, A., Cather, S., Anglos, D., Fotakis, C., 2006. Analytica Chimica Acta 573–574, 341–346. Variable nucleotide tandem repeat (VNTR) typing of two palaeopathological cases of lepromatous leprosy from Mediaeval England Taylor, G.M., Watson, C.L., Bouwman, A.S., Lockwood, D.N.J., Mays, S.A., 2006. Journal of Archaeological Science 33, 1569–1579. Pitfalls in drying oils identification in art objects by gas chromatography Tsakalof, A.K., Bairachtari, K.A., Chryssoulakis, I.D., 2006. Journal of Separation Science 29, 1642–1646. Dietary patterns during the late prehistoric/historic period in Cikobia island (Fiji): Insights from stable isotopes and dental pathologies Valentin, F., Bocherens, H., Gratuze, B., Sand, C., 2006. Journal of Archaeological Science 33, 1396–1410.
Astrobiology Microbial signatures in sabkha evaporite deposits of Chott el Gharsa (Tunisia) and their astrobiological implications Barbieri, R., Stivaletta, N., Marinangeli, L., Ori, G.G., 2006. Planetary and Space Science 54, 726–736. Monocyanopolyynes from a carbon arc in ammonia: About the relative abundance of polyynes series formed in a carbon arc and those detected in the circumstellar shells of AGB stars Cataldo, F., 2006. International Journal of Astrobiology 5, 37–45. The sulphur dilemma: Are there biosignatures on Europa’s icy and patchy surface? Chela-Flores, J., 2006. International Journal of Astrobiology 5, 17–22. Spectral analyses of sabkha sediments with implications for remote sensing on Mars Howari, F.M., 2006. International Journal of Astrobiology 5, 47–56. The red rain phenomenon of Kerala and its possible extraterrestrial origin Louis, G., Kumar, A.S., 2006. Astrophysics and Space Science 302, 175–187. The potential for prebiotic chemistry in the possible cryovolcanic dome Ganesa Macula on Titan Neish, C.D., Lorenz, R.D., O’Brien, D.P., 2006. International Journal of Astrobiology 5, 57–65. How do microorganisms reach the stratosphere? Wainwright, M., Alharbi, S., Wickramasinghe, N.C., 2006. International Journal of Astrobiology 5, 13–15.
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Bugbuster – survivability of living bacteria upon shock compression Willis, M.J., Ahrens, T.J., Bertani, L.E., Nash, C.Z., 2006. Earth and Planetary Science Letters 247, 185–196.
Biochemistry Importance of transcription factors in the regulation of plant secondary metabolism and their relevance to the control of terpenoid accumulation Broun, P., Liu, Y., Queen, E., Schwarz, Y., Abenes, M., Leibman, M., 2006. Phytochemistry Reviews 5, 27–38. Mining fatty acid databases for detection of novel compounds in aerobic bacteria Dawyndt, P., Vancanneyt, M., Snauwaert, C., De Baets, B., De Meyer, H., Swings, J., 2006. Journal of Microbiological Methods 66, 410–433. Natural neo acids and neo alkanes: Their analogs and derivatives Dembitsky, V.M., 2006. Lipids 41, 309–340. Terpenoids from marine organisms: Unique structures and their pharmacological potential Gross, H., Ko¨nig, G., 2006. Phytochemistry Reviews 5, 115–141. Acetate oxidation: is the dominant methanogenic pathway from acetate in the absence of Methanosaetaceae Karakashev, D., Batstone, D.J., Trably, E., Angelidaki, I., 2006. Applied and Environmental Microbiology 72, 5138– 5141. Farnesyl diphosphate synthase. A paradigm for understanding structure and function relationships in E-polyprenyl diphosphate synthases Poulter, C., 2006. Phytochemistry Reviews 5, 17–26. Early steps in isoprenoid biosynthesis: Multilevel regulation of the supply of common precursors in plant cells Rodrı´guez-Concepcio´n, M., 2006. Phytochemistry Reviews 5, 1–15. Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations Sullivan, M.B., Coleman, M.L., Weigele, P., Rohwer, F., Chisholm, S.W., 2005. PLoS Biology 3, e144. Occurrence, phylogeny and evolution of ribulose-1,5-bisphosphate carboxylase/oxygenase genes in obligately chemolithoautotrophic sulfur-oxidizing bacteria of the genera Thiomicrospira and Thioalkalimicrobium Tourova, T.P., Spiridonova, E.M., Berg, I.A., Kuznetsov, B.B., Sorokin, D.Y., 2006. Microbiology 152, 2159– 2169. Biodegradation Lignite degradation and mineralization in lignite-containing mine sediment as revealed by 14C activity measurements and molecular analysis Chabbi, A., Rumpel, C., Grootes, P.M., Gonza´lez-Pe´rez, J.A., Delaune, R.D., Gonzalez-Vila, F., Nixdorf, B., Huttl, R.F., 2006. Organic Geochemistry 37, 957–976. Removal and biodegradation of polycyclic aromatic hydrocarbons by Selenastrum capricornutum Chan, S.M.N., Luan, T., Wong, M.H., Tam, N.F.Y., 2006. Environmental Toxicology and Chemistry 25, 1772–1779. The role of indigenous bacterial and fungal soil populations in the biodegradation of crude oil in a desert soil Embar, K., Forgacs, C., Sivan, A., 2006. Biodegradation 17, 369–377. Oxygen-uptake and mass-transfer rates on the growth of Pseudomonas utida CECT5279: Influence on biodesulfurization (BDS) capability Gomez, E., Santos, V.E., Alcon, A., Martin, A.B., Garcia-Ochoa, F., 2006. Energy & Fuels 20, 1565–1571.
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Multisubstrate biodegradation kinetics for binary and complex mixtures of polycyclic aromatic hydrocarbons Knightes, C.D., Peters, C.A., 2006. Environmental Toxicology and Chemistry 25, 1746–1756. Biodegradation by members of the genus Rhodococcus: Biochemistry, physiology, and genetic adaptation Larkin, M.J., Kulakov, L.A., Allen, C.C.R., 2006. In: Laskin, A.I., Sariaslani, S., Gadd, G.M. (Eds.), Advances in Applied Microbiology, vol. 59, Academic Press, pp. 1–29. Characterization of hexane biodegradation by Rhodococcus sp. EH741 Lee, E.H., Cho, K.S., 2006. Journal of the Korean Society of Environmental Engineers 28, 144–149.
Biodegradation pathways/genomics Molecular characterization of cytochrome P450 genes in the polycyclic aromatic hydrocarbon degrading Mycobacterium vanbaalenii PYR-1 Brezna, B., Kweon, O., Stingley, R., Freeman, J., Khan, A., Polek, B., Jones, R., Cerniglia, C., 2006. Applied Microbiology and Biotechnology 71, 522–532.
Differential gene expression in response to phenol and catechol reveals different metabolic activities for the degradation of aromatic compounds in Bacillus subtilis Tam, L.T., Eymann, C., Albrecht, D., Sietmann, R., Schauer, F., Hecker, M., Antelmann, H., 2006. Environmental Microbiology 8, 1408–1427.
Biogeochemistry Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms Gorby, Y.A., Yanina, S., McLean, J.S., Rosso, K.M., Moyles, D., Dohnalkova, A., Beveridge, T.J., Chang, I.S., Kim, B.H., Kim, K.S., Culley, D.E., Reed, S.B., Romine, M.F., Saffarini, D.A., Hill, E.A., Shi, L., Elias, D.A., Kennedy, D.W., Pinchuk, G., Watanabe, K., Ishii, S.i., Logan, B., Nealson, K.H., Fredrickson, J.K., 2006. Proceedings of the National Academy of Sciences USA 103, 11358–11363. Reductive biotransformation of Fe in shale-limestone saprolite containing Fe(III) oxides and Fe(II)/Fe(III) phyllosilicates Kukkadapu, R.K., Zachara, J.M., Fredrickson, J.K., McKinley, J.P., Kennedy, D.W., Smith, S.C., Dong, H., 2006. Geochimica et Cosmochimica Acta 70, 3662–3676. Bioaccumulation of gold by sulfate-reducing bacteria cultured in the presence of gold(I)-thiosulfate complex Lengke, M., Southam, G., 2006. Geochimica et Cosmochimica Acta 70, 3646–3661. Molecular models of alginic acid: Interactions with calcium ions and calcite surfaces Perry IV, T.D., Cygan, R.T., Mitchell, R., 2006. Geochimica et Cosmochimica Acta 70, 3508–3532. Biomineralization of gold: Biofilms on bacterioform gold Reith, F., Rogers, S.L., McPhail, D.C., Webb, D., 2006. Science 313, 233–236. Molecular simulation of humic substance – Ca-montmorillonite complexes Sutton, R., Sposito, G., 2006. Geochimica et Cosmochimica Acta 70, 3566–3581. Structural model for the biogenic Mn oxide produced by Pseudomonas putida Villalobos, M., Lanson, B., Manceau, A., Toner, B., Sposito, G., 2006. American Mineralogist 91, 489–502. Modeling biogeochemical cycles in Chesapeake Bay with a coupled physical-biological model Xu, J., Hood, R.R., 2006. Estuarine, Coastal and Shelf Science 69, 19–46.
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Carbon Cycle/Sequestration Combined hydrogen production and storage with subsequent carbon crystallization Lueking, A.D., Gutierrez, H.R., Fonseca, D.A., Narayanan, D.L., Van Essendelft, D., Jain, P., Clifford, C.E.B., 2006. Journal of the American Chemical Society 128, 7758–7760. On leakage and seepage of CO2 from geologic storage sites into surface water Oldenburg, C., Lewicki, J., 2006. Environmental Geology 50, 691–705.
Coal/Peat/Lignite Geochemistry Analytical and characterization studies of organic and inorganic species in brown coal Domazetis, G., Raoarun, M., James, B.D., Liesegang, J., Pigram, P.J., Brack, N., Glaisher, R., 2006. Energy & Fuels 20, 1556–1564. Organic facies and palynofacies: Nomenclature, classification and applicability for petroleum source rock evaluation Ercegovac, M., Kostic, A., 2006. International Journal of Coal Geology 68, 70–78. Methane/CO2 sorption modeling for coalbed methane production and CO2 sequestration Harpalani, S., Prusty, B.K., Dutta, P., 2006. Energy & Fuels 20, 1591–1599. Petrology and chemistry of Permian coals from the Parana Basin: 1. Santa Terezinha, Leao-Butia and Candiota Coalfields, Rio Grande do Sul, Brazil Kalkreuth, W., Holz, M., Kern, M., Machado, G., Mexias, A., Silva, M.B., Willett, J., Finkelman, R., Burger, H., 2006. International Journal of Coal Geology 68, 79–116. Effect of noncovalent bonds on the thermal extraction of subbituminous coals Kashimura, N., Takanohashi, T., Saito, I., 2006. Energy & Fuels 20, 1605–1608. Cosmochemistry Free dicarboxylic and aromatic acids in the carbonaceous chondrites Murchison and Orgueil Martins, Z., Watson, J.S., Sephton, M.A., Botta, O., Ehrenfreund, P., Gilmour, I., 2006. Meteoritics & Planetary Science 41, 1073–1080.
Environmental Geochemistry Bioremediation of hydrocarbon-contaminated polar soils Aislabie, J., Saul, D., Foght, J., 2006. Extremophiles 10, 171–179. Optimization of microwave-assisted extraction of polycyclic aromatic hydrocarbons from sediments Bangkedphol, S., Sakultantimetha, A., Keenan, H.E., Songsasen, A., 2006. Journal of Environmental Science and Health Part A – Toxic Hazardous Substances and Environmental Engineering 41, 1105–1116. Anthropogenic markers in the Holocene stratigraphic sequence of the Gulf of Trieste (northern Adriatic Sea) Covelli, S., Fontolan, G., Faganeli, J., Ogrinc, N., 2006. Marine Geology 230, 29–51. A study of polycyclic aromatic hydrocarbons concentrations and source identifications by methods of diagnostic ratio and principal component analysis at Taichung chemical Harbor near Taiwan Strait Fang, G.-C., Wu, Y.-S., Chang, C.-N., Ho, T.-T., 2006. Chemosphere 64, 1233–1242. Characterization of oil spills in the environment using parallel factor multiway analysis Gaganis, V., Pasadakis, N., 2006. Analytica Chimica Acta 573–574, 328–332.
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A laboratory evaluation of the sorption of oil sands naphthenic acids on organic rich soils Janfada, A., Headley, J.V., Peru, K.M., Barbour, S.L., 2006. Journal of Environmental Science and Health Part A – Toxic Hazardous Substances and Environmental Engineering 41, 985–998. C4 plant isotopic composition (d13C) evidence for urban CO2 pollution in the city of Cotonou, Benin (West Africa) Ke`lome´, N.C., Le´veˆque, J., Andreux, F., Milloux, M.-J., Oye´de´, L.-M., 2006. Science of the Total Environment 366, 439– 447. An automated extraction approach for isolation of 24 polyaromatic hydrocarbons (PAHs) from various marine matrixes Liguori, L., Heggstad, K., Hove, H.T., Julshamn, K., 2006. Analytica Chimica Acta 573–574, 181–188. Sources of hydrocarbons in sediments of the Bay of Fort de France (Martinique) Mille, G., Guiliano, M., Asia, L., Malleret, L., Jalaluddin, N., 2006. Chemosphere 64, 1062–1073. Transformations of dissolved organic matter in a landfill leachate – A size exclusion chromatography/mass spectrometric approach Persson, L., Alsberg, T., Ledin, A., Odham, G., 2006. Chemosphere 64, 1093–1099. Ecological and geochemical investigations in the Ob estuary at sites of hydrocarbon exploration drilling Stepanets, O., Komarevsky, V., Ligaev, A., Sochnev, O., 2006. Geochemistry International 44, 704–714. Distribution and sources of hydrocarbons in surface sediments of Gemlik Bay (Marmara Sea, Turkey) ¨ nlu¨, S., Alpar, B., 2006. Chemosphere 64, 764–777. U Investigation on bioremediation of oil-polluted wetland at Liaodong Bay in northeast China Ye, S., Huang, L., Li, Y., Ding, M., Hu, Y., Ding, D., 2006. Applied Microbiology and Biotechnology 71, 543–548.
Evolution/Paleontology/Palynology Cultivated Beggiatoa spp. define the phylogenetic root of morphologically diverse, noncultured, vacuolate sulfur bacteria Ahmad, A., Kalanetra, K.M., Nelson, D.C., 2006. Canadian Journal of Microbiology 52, 591–598. 16S rRNA phylogenetic investigation of the candidate division ‘‘Korarchaeota’’ Auchtung, T.A., Takacs-Vesbach, C.D., Cavanaugh, C.M., 2006. Applied and Environmental Microbiology 72, 5077– 5082. Isotopic discrimination of resource partitioning among ungulates in C3-dominated communities from the Miocene of Florida and California Feranec, R.S., MacFadden, B.J., 2006. Paleobiology 32, 191–205. Molecular evidence for deep evolutionary roots of bilaterality in animal development Matus, D.Q., Pang, K., Marlow, H., Dunn, C.W., Thomsen, G.H., Martindale, M.Q., 2006. Proceedings of the National Academy of Sciences USA 103, 11195–11200. The Vendian (Ediacaran) in the geological record: Enigmas in geology’s prelude to the Cambrian explosion McCall, G.J.H., 2006. Earth-Science Reviews 77, 1–229. High-fidelity organic preservation of bone marrow in ca. 10 Ma amphibians McNamara, M.E., Orr, P.J., Kearns, S.L., Alcala´, L., Anado´n, P., Pen˜alver-Molla´, E., 2006. Geology 34, 641–644. Rapid Asia–Europe–North America geographic dispersal of earliest Eocene primate Teilhardina during the Paleocene-Eocene Thermal Maximum Smith, T., Rose, K.D., Gingerich, P.D., 2006. Proceedings of the National Academy of Sciences USA 103, 11223– 11227.
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Evolution: Origins of Life/Microbial Genomics Particle separation and concentration in natural systems Atencio, A., 2006. International Journal of Astrobiology 5, 23–36. Nanophase iron oxides as a key ultraviolet sunscreen for ancient photosynthetic microbes Bishop, J.L., Louris, S.K., Rogoff, D.A., Rothschild, L.J., 2006. International Journal of Astrobiology 5, 1–12. Origins and evolution of the recA/RAD51 gene family: Evidence for ancient gene duplication and endosymbiotic gene transfer Lin, Z., Kong, H., Nei, M., Ma, H., 2006. Proceedings of the National Academy of Sciences USA 103, 10328–10333. Collective evolution and the genetic code Vetsigian, K., Woese, C., Goldenfeld, N., 2006. Proceedings of the National Academy of Sciences USA 103, 10696–10701.
Fluid Inclusions Estimation of volume fractions of liquid and vapor phases in fluid inclusions, and definition of inclusion shapes Bakker, R.J., Diamond, L.W., 2006. American Mineralogist 91, 635–657. Detection of water in petroleum inclusions and its implications Cao, J., Yao, S., Hu, W., Zhang, Y., Wang, X., Zhang, Y., Tang, Y., 2006. Chinese Science Bulletin 51, 1501–1507. P–V–T relationships and mineral equilibria in inclusions in minerals Guiraud, M., Powell, R., 2006. Earth and Planetary Science Letters 244, 683–694.
Geology Hydrates Stabilizing of methane hydrate and transition to a new high-pressure structure at 40 GPa Hirai, H., Machida, S.-i., Kawamura, T., Yamamoto, Y., Yagi, T., 2006. American Mineralogist 91, 826–830. Microbial methane and ethane from gas hydrate nodules of the Makassar Strait, Indonesia Sassen, R., Curiale, J.A., 2006. Organic Geochemistry 37, 977–980. A finite element computational method for gas hydrate. Part I: Theory Scott, D., Das, D., Subbaihaannadurai, V., 2006. Petroleum Science and Technology 24, 895–909. A finite element computational method for gas hydrate. Part II: Application Scott, D., Das, D., Subbaihaannadurai, V., 2006. Petroleum Science and Technology 24, 911–922.
Isotope Geochemistry Memory effect in deuterium analysis by continuous flow isotope ratio measurement Olsen, J., Seierstad, I., Vinther, B., Johnsen, S., Heinemeier, J., 2006. International Journal of Mass Spectrometry 254, 44– 52. Iron isotopes in the early marine diagenetic iron cycle Staubwasser, M., von Blanckenburg, F., Schoenberg, R., 2006. Geology 34, 629–632. Effects of element sulfur on carbon isotopic fractionation of methane Tianzhu, L., Gengxin, Z., Junli, Q., 2006. Shiyou shiyan Dizhi (Petroleum Geology and Experiment) 28, 173–176.
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Stable isotopes as one of nature’s ecological recorders West, J.B., Bowen, G.J., Cerling, T.E., Ehleringer, J.R., 2006. Trends in Ecology & Evolution 21, 408–414.
Microbiology/Extremophiles – Microbial Ecology Bacterial diversity of a cyanobacterial mat degrading petroleum compounds at elevated salinities and temperatures Abed, R.M.M., Al-Thukair, A., de Beer, D., 2006. FEMS Microbiology Ecology 57, 290–301. Isolation of a novel acidiphilic methanogen from an acidic peat bog Brduer, S.L., Cadillo-Quiroz, H., Yashiro, E., Yavitt, J.B., Zinder, S.H., 2006. Nature 442, 192–194. Characterization of acid-tolerant H2/CO2-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State Brduer, S.L., Yashiro, E., Ueno, N.G., Yavitt, J.B., Zinder, S.H., 2006. FEMS Microbiology Ecology 57, 206–216. Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA Cadillo-Quiroz, H., Brduer, S., Yashiro, E., Sun, C., Yavitt, J., Zinder, S., 2006. Environmental Microbiology 8, 1428– 1440. Thermovirga lienii gen. nov., sp. nov., a novel moderately thermophilic, anaerobic, amino-acid-degrading bacterium isolated from a North Sea oil well Dahle, H., Birkeland, N.-K., 2006. International Journal of Systematic and Evolutionary Microbiology 56, 1539– 1545. Simulating the contribution of coaggregation to interspecies hydrogen fluxes in syntrophic methanogenic consortia Ishii, S.i., Kosaka, T., Hotta, Y., Watanabe, K., 2006. Applied and Environmental Microbiology 72, 5093–5096. Two novel bacteriophages of thermophilic bacteria isolated from deep-sea hydrothermal fields Liu, B., Wu, S., Song, Q., Zhang, X., Xie, L., 2006. Current Microbiology 53, 163–166. Evidence of the activity of dissimilatory sulfate-reducing prokaryotes in nonsulfidogenic tropical mobile muds Madrid, V.M., Aller, R.C., Aller, J.Y., Chistoserdov, A.Y., 2006. FEMS Microbiology Ecology 57, 169–181. Evidence for existence of ‘‘Mesotogas,’’ members of the order Thermotogales adapted to low-temperature environments Nesbo, C.L., Dlutek, M., Zhaxybayeva, O., Doolittle, W.F., 2006. Applied and Environmental Microbiology 72, 5061– 5068. Vertical distribution and diversity of bacteria and archaea in sulfide and methane-rich cold seep sediments located at the base of the Florida Escarpment Reed, A., Lutz, R., Vetriani, C., 2006. Extremophiles 10, 199–211. A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents Reysenbach, A.-L., Liu, Y., Banta, A.B., Beveridge, T.J., Kirshtein, J.D., Schouten, S., Tivey, M.K., Von Damm, K.L., Voytek, M.A., 2006. Nature 442, 444–447. Acidophilic microbial communities associated with a natural, biodegraded hydrocarbon seepage Ro¨ling, W.F.M., Ortega-Lucach, S., Larter, S.R., Head, I.M., 2006. Journal of Applied Microbiology 101, 290–299. Stratified communities of active Archaea in deep marine subsurface sediments Sørensen, K.B., Teske, A., 2006. Applied and Environmental Microbiology 72, 4596–4603. Biogeographical distribution and ecological ranges of benthic cyanobacteria in East Antarctic lakes Taton, A., Grubisic, S., Balthasart, P., Hodgson, D.A., Laybourn-Parry, J., Wilmotte, A., 2006. FEMS Microbiology Ecology 57, 272–289.
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Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico Yan, T., Ye, Q., Zhou, J., Zhang, C.L., 2006. FEMS Microbiology Ecology 57, 251–259.
Paleoclimatology/Palaeoceanography Variations of organic carbon isotopic composition and its environmental significance during the last glacial on western Chinese Loess Plateau Chen, F., Rao, Z., Zhang, J., Jin, M., Ma, J., 2006. Chinese Science Bulletin 51, 1593–1602. Reconstructing grassland vegetation and paleotemperatures using carbon isotope ratios of bison tooth enamel Hoppe, K.A., Paytan, A., Chamberlain, P., 2006. Geology 34, 649–652. A major sulphur isotope event at c. 510 Ma: A possible anoxia-extinction-volcanism connection during the Early-Middle Cambrian transition? Hough, M.L., Shields, G.A., Evins, L.Z., Strauss, H., Henderson, R.A., Mackenzie, S., 2006. Terra Nova 18, 257–263. Stable isotope record in paleosol carbonates from the Chinese Loess Plateau: Implications for late Neogene paleoclimate and paleovegetation Kaakinen, A., Sonninen, E., Lunkka, J.P., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 237, 359–369. A stable isotope aridity index for terrestrial environments Levin, N.E., Cerling, T.E., Passey, B.H., Harris, J.M., Ehleringer, J.R., 2006. Proceedings of the National Academy of Sciences USA 103, 11201–11205. Investigating microbial micro-habitat structure using X-ray computed tomography Nunan, N., Ritz, K., Rivers, M., Feeney, D.S., Young, I.M., 2006. Geoderma 133, 398–407. South Tasman Sea alkenone palaeothermometry over the last four glacial/interglacial cycles Pelejero, C., Calvo, E., Barrows, T.T., Logan, G.A., De Deckker, P., 2006. Marine Geology 230, 73–86. Effect of changes in d18O content of the surface ocean on estimated sea surface temperatures in past warm climate Roche, D.M., Donnadieu, Y., Puce´at, E., Paillard, D., 2006. Paleoceanography 21, Citation No. PA2023. Abrupt tropical climate change: Past and present Thompson, L.G., Mosley-Thompson, E., Brecher, H., Davis, M., Leon, B., Les, D., Lin, P.-N., Mashiotta, T., Mountain, K., 2006. Proceedings of the National Academy of Sciences USA 103, 10536–10543.
Paleoecology of Extinction Events Rapid vertebrate recuperation in the Karoo Basin of South Africa following the End-Permian extinction Botha, J., Smith, R.M.H., 2006. Journal of African Earth Sciences 45, 502–514. Carbon isotope excursions and microfacies changes in marine Permian-Triassic boundary sections in Hungary Haas, J., DDeme´ny, A., Hips, K., Vennemann, T.W., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 237, 160– 181.
Precambrian Geochemistry The structure and distribution of carbon in 3.5 Ga Apex chert: Implications for the biogenicity of Earth’s oldest putative microfossils De Gregorio, B.T., Sharp, T.G., 2006. American Mineralogist 91, 784–789.
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Archean and Proterozoic ministromatolites: Taxonomic composition of successive assemblages Raaben, M.E., 2005. Stratigraphy and Geological Correlation (Stratigrafiya, Geologicheskaya Korrelyatsiya) 13, 367–379. A new discovery of macroscopic fossils from the Ediacaran Doushantuo Formation in the Yangtze Gorges area Tang, F., Yin, C., Liu, Y., Wang, Z., Liu, P., Gao, L., 2006. Chinese Science Bulletin 51, 1487–1493.
Petroleum/Source Rock Geochemistry Comparison of hydrocarbons formed at pyrolysis of Turkish type I kerogen (Go¨ynu¨k) and type II kerogen (Beypazari) Ballice, L., Reimert, R., 2005. Oil Shale 22, 317–332. Chemical fingerprinting of algaenans using RuO4 degradation Blokker, P., van den Ende, H., de Leeuw, J.W., Versteegh, G.J.M., Sinninghe Damste´, J.S., 2006. Organic Geochemistry 37, 871–881. On the problem of the formation and geochemical role of bituminous matter in pegmatites of the Khibiny and Lovozero alkaline massifs, Kola Peninsula, Russia Chukanov, N., Pekov, I., Sokolov, S., Nekrasov, A., Ermolaeva, V., Naumova, I., 2006. Geochemistry International 44, 715–728. Thermodynamic modelling of petroleum fluids de Hemptinne, J.C., Be´har, E., 2006. Oil & Gas Science and Technology – Revue de l’Institut Franc¸ais du Pe´trole 61, 303– 317. From petroleum-type organofacies to hydrocarbon phase prediction di Primio, R., Horsfield, B., 2006. American Association of Petroleum Geologists Bulletin 90, 1031–1058. Basin architecture and petroleum system of Krishna Godavari Basin, east coast of India Gupta, S.K., 2006. The Leading Edge 25, 830–837. Petroleum migration, faults and overpressure. Part I: Calibrating basin modelling using petroleum in traps – A review Karlsen, D.A., Skeie, J.E., 2006. Journal of Petroleum Geology 29, 227–256. Predicting the timing and characteristics of petroleum formation using tar mats and petroleum asphaltenes: A case study from the northern North Sea Keym, M., Dieckmann, V., 2006. Journal of Petroleum Geology 29, 273–296. Kinetic modeling of individual gaseous component formed from coal in a confined system Shuai, Y., Peng, P.a., Zou, Y.-R., Zhang, S., 2006. Organic Geochemistry 37, 932–943. Biogeochemical evidence for the presence of the angiosperm molecular fossil oleanane in Paleozoic and Mesozoic nonangiospermous fossils Taylor, D.W., Li, H., Dahl, J., Fago, F.J., Zinniker, D., Moldowan, J.M., 2006. Paleobiology 32, 179–190. Experimental study to confirm the existence of hydrocarbon under high pressure and temperature of deep lithosphere Wang, C., Du, J., Wang, W., Xie, H., Chen, G., Duan, Y., Zhou, X., 2006. Chinese Science Bulletin 51, 1633–1638. Identification and significance of 3b-alkyl steranes in the Eogene lacustrine sediments and petroleum of China Wang, G., Zhang, L., Wang, T., 2006. Chinese Science Bulletin 51, 1628–1632. Diamondoids and molecular biomarkers generated from modern sediments in the absence and presence of minerals during hydrous pyrolysis Wei, Z., Moldowan, J.M., Paytan, A., 2006. Organic Geochemistry 37, 891–911.
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Production/Engineering Geochemistry Diffusivity of asphaltene molecules by fluorescence correlation spectroscopy Andrews, A.B., Guerra, R.E., Mullins, O.C., Sen, P.N., 2006. Journal of Physical Chemistry A 110, 8093– 8097. Optical fiber extrinsic refractometer to measure RI of samples in a high pressure and temperature system: Application to wax and asphaltene precipitation measurements Castillo, J., Canelo´n, C., Acevedo, S., Carrier, H., Daridon, J.-L., 2006. Fuel 85, 2220–2228. Downhole separation of petroleum fluids Khan, M.M., Islam, M.R., 2006. Petroleum Science and Technology 24, 789–805. Certain relationships between chemical composition and properties of petroleum asphalts from different origin Oyekunle, L.O., 2006. Oil & Gas Science and Technology – Revue de l’Institut Franc¸ais du Pe´trole 61, 433–441. Characterisation of asphaltenes and modelling of flocculation – state of the art Pina, A., Mougin, P., Be´har, E., 2006. Oil & Gas Science and Technology – Revue de l’Institut Franc¸ais du Pe´trole 61, 319–343. Breaking of water-in-crude oil emulsions. 1. Physicochemical phenomenology of demulsifier action Rondo´n, M., Bouriat, P., Lachaise, J., Salager, J.-L., 2006. Energy & Fuels 20, 1600–1604. Langmuir films of bitumen at oil/water interfaces Solovyev, A., Zhang, L.Y., Xu, Z., Masliyah, J.H., 2006. Energy & Fuels 20, 1572–1578. Applications of molecular simulation in oil and gas production and processing Ungerer, P., Lachet, V., Tavitian, B., 2006. Oil & Gas Science and Technology – Revue de l’Institut Franc¸ais du Pe´trole 61, 387–403. Study of pressure and temperature effects on asphaltene stability in presence of CO2 Verdier, S., Carrier, H., Andersen, S.I., Daridon, J.-L., 2006. Energy & Fuels 20, 1584–1590. Wettability alterations due to crude oil composition and an anionic surfactant in petroleum reservoirs Xu, W., Ayirala, S., Rao, D., 2006. Journal of Adhesion Science and Technology 20, 693–704.
Recent Sediments/Hydrosphere Stoichiometry of the degradation of dissolved and particulate biogenic organic matter in the NW Iberian upwelling ´ lvarez-Salgado, X.A., Nieto-Cid, M., Gago, J., Brea, S., Castro, C.G., Doval, M.D., Pe´rez, F.F., 2006. Journal of A Geophysical Research – Oceans 111, Citation No. C07017. Biological and geochemical record of anthropogenic impacts in Recent sediments from Lake Pupuke, Auckland City, New Zealand Augustinus, P., Reid, M., Andersson, S., Deng, Y., Horrocks, M., 2006. Journal of Paleolimnology 35, 789–805. An optimised method for the extraction and analysis of lipid biomarkers from stalagmites Blyth, A.J., Farrimond, P., Jones, M., 2006. Organic Geochemistry 37, 882–890. Spatial variability of stable isotopes and fossil pigments in surface sediments of Alaskan coastal lakes: Constraints on quantitative estimates of past salmon abundance Brock, C.S., Leavitt, P.R., Schindler, D.E., Johnson, S.P., Moore, J.W., 2006. Limnology and Oceanography 51, 1637– 1647.
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Bioenergetic controls on anaerobic oxidation of methane (AOM) in coastal marine sediments: A theoretical analysis Dale, A.W., Regnier, P., Van Cappellen, P., 2006. American Journal of Science 306, 246–294. Biomarker analysis of microbial diversity in sediments of a saline groundwater seep of Salt Basin, Nebraska Fang, J., Chan, O., Joeckel, R.M., Huang, Y., Wang, Y., Bazylinski, D.A., Moorman, T.B., Ang Clement, B.J., 2006. Organic Geochemistry 37, 912–931. Oxygen production and carbon sequestration in an upwelling coastal margin Hales, B., Karp-Boss, L., Perlin, A., Wheeler, P.A., 2006. Global Biogeochemical Cycles 20, Citation No. GB3001. Natural product biomarkers as indicators of sources and transport of sedimentary organic matter in a subtropical river Jaffe´, R., Rushdi, A.I., Medeiros, P.M., Simoneit, B.R.T., 2006. Chemosphere 64, 1870–1884. Modeling vertical excursions of the redox boundary in sediments: Application to deep basins of the Arctic Ocean Katsev, S., Sundby, B., Mucci, A., 2006. Limnology and Oceanography 51, 1581–1593. Variation in microbial biomass and community structure in sediments of Peter the Great Bay (Sea of Japan/East Sea), as estimated from fatty acid biomarkers Kim, K., Kim, Y.B., Park J.J., Nam, S.H., Park, K.-A., Chang, K.-I., 2005. Ocean Science Journal 40, 145–154. Relative importance of CO2 recycling and CH4 pathways in lake food webs along a dissolved organic carbon gradient Lennon, J.T., Faiia, A.M., Feng, X., Cottingham, K.L., 2006. Limnology and Oceanography 51, 1602–1613. Characterization of surface marine sediments from Rı´a de Arousa estuary according to extractable humic matter content Moreda-Pin˜eiro, A., Seco-Gesto, E.M., Bermejo-Barrera, A., Bermejo-Barrera, P., 2006. Chemosphere 64, 866–873. Fourier-transform infrared spectroscopy (FTIRS), a new method to infer past changes in tree-line position and TOC using lake sediment Rose´n, P., Persson, P., 2006. Journal of Paleolimnology 35, 913–923. Compositions and sources of extractable organic matter in Mesopotamian marshland surface sediments of Iraq. I: Aliphatic lipids Rushdi, A., DouAbul, A., Mohammed, S., Simoneit, B., 2006. Environmental Geology 50, 857–866. Photo-oxidation of dissolved organic matter in river water and its effect on trace element speciation Shiller, A.M., Duan, S., van Erp, P., Bianchi, T.S., 2006. Limnology and Oceanography 51, 1716–1728. Fate of peptidoglycan in an intertidal sediment: An in situ 13C-labeling study Veuger, B., van Oevelen, D., Boschker, H.T.S., Middelburg, J.J., 2006. Limnology and Oceanography 51, 1572–1580. Spatial variability in the coupling of organic carbon, nutrients, and phytoplankton pigments in surface waters and sediments of the Mississippi River plume Wysocki, L.A., Bianchi, T.S., Powell, R.T., Reuss, N., 2006. Estuarine, Coastal and Shelf Science 69, 47–63. Temporal variations of organic carbon inputs into the upper Yukon River: Evidence from fatty acids and their stable carbon isotopic compositions in dissolved, colloidal and particulate phases Zou, L., Sun, M.-Y., Guo, L., 2006. Organic Geochemistry 37, 944–956.
Seepage-Remote Detection Low d13C in tests of live epibenthic and endobenthic foraminifera at a site of active methane seepage Mackensen, A., Wollenburg, J., Licari, L., 2006. Paleoceanography 21, Citation No. PA2022.
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Geochemistry Articles / Organic Geochemistry 37 (2006) I–XIV
Detection and quantification of chemical plumes using a portable underwater membrane introduction mass spectrometer Short, R.T., Toler, S.K., Kibelka, G.P.G., Rueda Roa, D.T., Bell, R.J., Byrne, R.H., 2006. TrAC Trends in Analytical Chemistry 25, 637–646.
Soil Geochemistry Soil organic carbon and black carbon storage and dynamics under different fire regimes in temperate mixed-grass savanna Ansley, R.J., Boutton, T.W., Skjemstad, J.O., 2006. Global Biogeochemical Cycles 20, Citation No. GB3006. Fine roots vs. needles: A comparison of 13C and 15N dynamics in a Ponderosa pine forest soil Bird, J., Torn, M., 2006. Biogeochemistry 79, 361–382. Carbon and hydrogen isotope variation of plant biomarkers in a plant-soil system Chikaraishi, Y., Naraoka, H., 2006. Chemical Geology 231, 190–202. The functions and components of the Sourhope soil microbiota Griffiths, R.I., Bailey, M.J., McNamara, N.P., Whiteley, A.S., 2006. Applied Soil Ecology 33, 114–126. Humic substances in soils: Are they really chemically distinct? Kelleher, B.P., Simpson, A.J., 2006. Environmental Science & Technology 40, 4605–4611. Carbon and nitrogen stable isotopes in forest soils of Siberia Menyailo, O., Hungate, B., 2006. Doklady Earth Sciences 409, 747–749. Short- and long-term tannin induced carbon, nitrogen and phosphorus dynamics in Corsican pine litter Nierop, K., Verstraten, J., Tietema, A., Westerveld, J., Wartenbergh, P., 2006. Biogeochemistry 79, 275–296. Expanded compilations of references with abstracts in Microsoft Word and ISI EndNote formats are available at: http:// www.eaog.org/other/ref_update.html. Compiled by Clifford C. Walters