Accepted Manuscript HP1α is highly expressed in glioma cells and facilitates cell proliferation and survival Xianliang Lai, Zhifeng Deng, Hua Guo, Xingen Zhu, Wei Tu PII:
S0006-291X(17)31188-9
DOI:
10.1016/j.bbrc.2017.06.056
Reference:
YBBRC 37962
To appear in:
Biochemical and Biophysical Research Communications
Received Date: 29 May 2017 Accepted Date: 12 June 2017
Please cite this article as: X. Lai, Z. Deng, H. Guo, X. Zhu, W. Tu, HP1α is highly expressed in glioma cells and facilitates cell proliferation and survival, Biochemical and Biophysical Research Communications (2017), doi: 10.1016/j.bbrc.2017.06.056. This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
ACCEPTED MANUSCRIPT
HP1α Is Highly Expressed in Glioma Cells and Facilitates Cell Proliferation
1
SC
Xianliang Lai1, Zhifeng Deng1, Hua Guo1, Xingen Zhu1, Wei Tu1,a
Department of Neurosurgery, the Second Affiliated Hospital of Nanchang University, Nanchang
Corresponding author: Wei Tu.
AC C
EP
TE D
E-mail address:
[email protected]
M AN U
330006, China
a
RI PT
and Survival
LAI et al: HP1α promotes glioma cell proliferation and survival.
1
ACCEPTED MANUSCRIPT
Abstract Epigenetic alteration plays critical roles in gliomagenesis by regulating gene expression through modifications of Histones and DNA. Trimethylation of H3K9, an essential repressed
RI PT
transcription mark, and one of its methyltransferase, SUV39H1, are implicated in glioma pathogenesis and progression. We find that the protein level of HP1α, a reader of H3K9me3 is elevated in cultured glioma cell lines and glioma tissues. H3K9me3 is also upregulated. Depletion of HP1α and SUV39H1 weakens glioma cell proliferation capacity and results in
SC
apoptosis of cells. Furthermore, we find that HP1α and H3K9me3 are enriched in the FAS and PUMA promoters, which suggests that upregulated HP1α and H3K9me3 contribute to cell survival by suppressing apoptotic activators. These data suggests that up-regulated HP1α and
M AN U
H3K9me3 in glioma cells are functionally associated with glioma pathogenesis and progression
AC C
EP
TE D
and may serve as novel biomarkers for diagnostic and therapeutic targeting of brain tumors.
Keywords: HP1α; H3K9 methylation; glioma; transcriptional repression
2
ACCEPTED MANUSCRIPT
Introduction Human gliomas are highly invasive and malignant brain tumors [1]. Despite the progress in glioma diagnosis and therapy achieved with decades of study, survival of glioma patients still
RI PT
needs improvement [2; 3; 4; 5; 6]. Genetic mutation and epigenetic aberrance have been proposed to explain the underlying mechanisms of glioma pathogenesis [7]. Isocitrate dehydrogenase (IDH1) and isocitrate dehydrogenase (IDH2) mutations are suggested to be a survival predictor of glioma patients [8;
SC
9; 10; 11]. Heat shock protein B11 is related to prognosis in patients with high-grade glioma [12]. Recently, DNA and Histone modification alteration was also identified to be involved in glioma tumorigenesis and studied for searching potential clinical treatment [3; 13; 14; 15]. Effect
M AN U
of O6-methylguanine (MGMT) promoter methylation regulation in glioma cells highlights the roles of DNA methylation in glioma pathogenesis and treatment [10; 11; 16]. Histone modification, especially H3 methylation, is largely and widely paid attention [17; 18; 19; 20]. The previous study suggested the roles of H3K27 methylation in glioma tumorigenesis and progression [17; 18; 21]. Mutation and somatic alterations of Histone H3 define the prognosis improvement and even potential therapy of gliomas by altering H3 modification [17; 18; 19; 20].
TE D
It is also worth being mentioned that the potential significance of linker Histone variant H1.0 in gliomas was also proposed [22].
Suppressor of variegation 3-9 homology 1 (SUV39H1) is a Histone methyltransferase that specifically trimethylates ‘Lys-9’ of histone H3 using monomethylated or dimethylated H3
EP
‘Lys-9’ as substrate [23]. Trimethylates ‘Lys-9’ of Histone H3 represent a specific tag for epigenetic transcriptional repression by recruiting heterochromatin protein 1 (HP1) family
AC C
(including CBX1, CBX3, and CBX5), which specifically recognize and bind to Histone H3 tail with H3K9me3 [24]. SUV39H1 and HP1 bind to each other to form a complex and mainly function in heterochromatin regions by playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions [25; 26; 27; 28]. SUV39H1 and HP1 are also demonstrated to be important for regulating euchromatin gene expression by interaction with retinoblastoma 1 (Rb1) [29]. Recent studies have linked the suppression function of SUV39H1 and H3K9me3 to cancer. Upregulation of SUV39H1 and high level of H3K9me3 in glioma cells and patients’ glioma tissues suggested the roles of Histone methylation in brain tumorigenesis
3
ACCEPTED MANUSCRIPT
and progression [22; 30]. HP1 proteins are the main readers of H3K9me3, but there is little information about the potential roles of HP1 in gliomas tomorigenesis or progression [24; 28]. We find that HP1α is upregulated in glioma cells and glioma tumor tissues. HP1α and SUV39H1 are required for glioma cell proliferation and protect cells from apoptosis. HP1α and
RI PT
H3K9me3 are enriched in the FAS and PUMA promoters and reduce the protein expression, which suggests that up-regulated HP1α and H3K9me3 prevent apoptosis by suppressing apoptotic activators in glioma cells. Therefore, our data indicates that high levels of HP1α, H3K9me3 are potential biomarkers of gliomas, and enrichs the roles of epigenetic regulation of
AC C
EP
TE D
M AN U
SC
Histone modifications in tumorigenesis.
4
ACCEPTED MANUSCRIPT
Materials and Methods
Antibodies
RI PT
Anti-Actin (mabcam8224, abcam) 1:500 WB (western blotting); anti-SUV39H1 (ab38637, abcam) 1:500 WB, 1:50 IP (immunoprecipitation); anti-HP1α (730019, ThermoFisher) 1:500 WB; anti-H3K9me3 (61013, Active motif) 1:1000 WB; anti-G9a (07-551, Millipore) 1:500 WB; anti-BrdU (ab8152, abcam) 1:50 IF (immunofluorescence).
SC
The secondary antibodies used for immunofluorescence were Alexa fluor 568-conjugated goat anti-mouse IgG (Alexa fluor series, Molecular probes) 1:200. The secondary antibodies
M AN U
used for WB were HRP-conjugated goat anti-mouse/rabbit IgG (GE healthcare) 1:5000.
Cell cultures
Human brain astrocytoma glioma cell line 1321N1 (86030402, SIGMA), human glioblastoma cell lines DBTRG-05MG (93061119, SIGMA) and ANGM-CSS (08040401, SIGMA), human Caucasian glioblastoma-derived cell line T98G (92090213, SIGMA), and human astrocytomaderived cell line GOS3 (ACC-408, DSMZ) were cultured in RPMI 1640 medium (Gibco)
TE D
containing 10% FBS (Gibco) and 0.1% Fungizone antimycotic (Gibco). Normal human astrocyte (NHA) cell strain (Clonetics Corporation) was maintained in MEM supplemented with L-
under 5% CO2.
Tissue samples
EP
glutamine and 10% FBS (Gibco). Cells were plated in 15 cm plastic cell culture dishes at 37°C
AC C
Archival human normal brain tissues and glioma tissues samples were from Department of Neurosurgery, the Second Affiliated Hospital of Nanchang University with approval from the institutional review boards. Histological grading of tumors was performed by following the latest principles of World Health Organization Classification [31]. All samples were deidentified before analysis.
Reverse transcription (RT) PCR and quantitative PCR analysis Tissue was broken by douncing and the total RNA was extracted using RNeasy Mini Kit (Qiagen) by following the manufacturer’s instructions. OneTaq RT-PCR Kit (NEB) was used to 5
ACCEPTED MANUSCRIPT
produce cDNA library according to the manufacturer’s instructions. The produced cDNA was used as template for amplification and quantification with specific primer sets for HP1α and Actin using HotStarTaq Plus Master Mix Kit (Qiagen). The conditions of the PCR were as follows: the first activation for 5 min at 95°C, denaturation at 95°C for 30 s, annealing at 58°C
RI PT
for 30 s, extension at 72°C for 1 min, and final extension for 5 min at 72°C. The cycle number was 38. PCR-produced fragments were analyzed by running 2% agarose gel and then measured using Image J (National Institutes of Health). The primer sequences are below:
HP1α reverse primer: 5’-GTAGATATTCCACTTGT-3’.
SC
HP1α forward primer: 5’-GGAAAGAAAACCAAGCGGACA-3’.
Actin forward primer: 5’-GATGATGATATCGCCGCGCTC-3’.
Western blotting
M AN U
Actin reverse primer: 5’-TGGGGCGCCCCACGATGGAG-3’.
Western blotting was performed as previous description [32]. Briefly, SDS-PAGE was performed to separate the proteins that were further transferred to a PVDF membrane (Millipore). The PVDF membrane was sequentially incubated with primary antibodies and
TE D
secondary HRP-conjugated antibodies.
Prognostic significance analysis
GeneChip (Affymetrix Human Genome U133 Plus 2.0) mRNA expression profiling data was
EP
downloaded from two published datasets, dataset 1 (GSE16011, n = 270) and dataset 2 (GSE13041-GPL570, n = 27) [33; 34]. The clinical information of all cases (patient age at diagnosis, tumor grade, surgery, and survival time) was available. Affymetrix GeneChip probes
AC C
Mapping was performed using customchip definition files based on the NCBI Entrez Gene v.11 (http://brainarray.mbni.med.umich.edu/Brainarray). Probesets were summarized by median intensity. To separate samples into low expression and high expression groups, recursive partitioning analysis was performed. The two groups were compared by the Kaplan-Meier method and the significance was defined by the log-rank test.
BrdU incorporation assay Cells were washed with PBS, followed by fixation and permeabilization in methanol for 7-10
6
ACCEPTED MANUSCRIPT
min at –20°C. Fixed cells were incubated with primary antibodies in PBS containing 3% bovine serum, followed by incubating with secondary antibodies and 1 µg/ml DAPI (Wako pure chemical industries) [35]. A microscope (NIKON) equipped with a 100×/1.40 NA objective lens
RI PT
was used to observe the cells.
Chromatin immunoprecipitation assays
H3K9me3 and HP1α chromatin immunoprecipitations (ChIPs) were performed using 1 µg antiH3K9me3 antibody (61013, Active motif) and 2 µg anti-HP1α antibody (05-689, Millipore)
SC
respectively. A mouse IgG isotype was used as a control for antibody specificity. Cells (on plates) and tissues (cut up) were washed with PBS, fixed with 1% formaldehyde for 20 min, quenched
M AN U
with 0.125 M glycine, and then lysed in sonication buffer (50 mM Hepes, pH 7.9, 140 mM NaCl, 1 mM EDTA, 1 mM PMSF, 0.1% SDS, 0.1% NaDeoxycholate, and 1% Triton X-100). Crosslinking
was
reversed
by
incubating
at
65°C
overnight.
After
chromatin
immunoprecipitation, DNA was purified and analysed in duplicate using a Sybr GreenER mix (Invitrogen) and quantified on a RT-qPCR machine (Applied biosystems). The primer sets were
TE D
described previously [36]. RT-qPCR signal of ChIP DNA was normalized to its input DNA.
MTT assay
Cells were collected and plated into 96-well plates, and then left overnight. The next day, cells were incubated with 1 mg/ml MTT (Sigma) for 3 h in cell culture incubator. The MTT formazan
AC C
nm as background.
EP
product was solubilized in isopropanol and the absorbance was measured at 570 nm by using 690
Apoptosis assay
Cells were plated in 12-well plates at a density of approximately 50,000 cells per well. Cells were trypsinized, washed once with PBS, and harvested by centrifugation. Annexin V/propidium iodide kit (ThermoFisher) was used to double stain cells. Cell apoptosis was measured by using a fluorescence-activated
cell
sorter
(FACSCalibur,
Ecton-Dickinson).
positive/propidium iodide-negative cells were numbered as apoptotic cells.
Quantitative and Statistical analysis 7
Annexin
V-
ACCEPTED MANUSCRIPT
The fluorescence signals and western blotting bands intensity were measured with Image J software (National Institutes of Health). Statistical analyses were performed by using SPSS (SPSS Inc.) and GraphPad Prism 5 software (GraphPad Software Inc.). The statistical
AC C
EP
TE D
M AN U
SC
RI PT
significance calculation was based on the unpaired two-tailed student’s t-test.
8
ACCEPTED MANUSCRIPT
Results HP1α, H3K9me3, and SUV39H1 are upregulated in glioma cell lines Oncogenic role of SUV39H1, a critical H3K9me3 methyltransferase [23; 26], has been proposed
RI PT
in several cancer cell types [37; 38], especially in gliomas [30]. Consistantly, H3K9me3 exhibited up-regulated level in some cancer cell lines [39]. However, it is unclear that how H3K9me3 is connected to the tumorigenesis. In order to address the issue, we focused on investigating the roles of H3K9me3 in gliomas. First, we detected the levels of H3K9me3 and its
SC
reader HP1α protein in normal human astrocyte (NHA) cell line, human brain astrocytoma glioma cell line 1321N1, human astrocytoma-derived cell line GOS3, and human glioblastoma
M AN U
cells (T98G, DBTRG-05MG, and ANGM-CSS) by western blotting assays (Fig. 1A). HP1α protein levels were elevated by 110% (in GOS3), 100% (in DBTRG-05MG), 160% (in T98G), 115% (in ANGM-CSS), and 114% (in 1321N1) compared to NHA cells (Fig. 1A,B). H3K9me3 was up-regulated by 98% (in GOS3), 90% (in DBTRG-05MG), 95% (in T98G), 70% (in ANGM-CSS), and 99% (in 1321N1) compared to NHA cells (Fig. 1A,C). Then we checked the levels of HP1α and H3K9me3 in three normal brain tissues and fifteen glioma tissues of different
TE D
grades (2, 3, and 4). HP1α protein levels were elevated by 120% (in grade 2), 190% (in grade 3), and 230% (in grade 4) compared to normal brain (Fig. 1D,E). H3K9me3 was increased by 180% (in grade 2), 190% (in grade 3), and 210% (in grade 4) compared to NHA cells (Fig. 1D,F). Consistant with the elevation of HP1α protein levels in the glioma tissues, the mRNA levels of
EP
HP1α also elevated (by ~120%) in all the three grades of glioma tissues compared to normal brain (Fig. 1G,H). Thus, these data indicates that HP1α and H3K9me3 are up-regulated in
AC C
glioma cell lines and tumor tissues.
To examine whether expression of HP1α is clinically correlated with glioma patients
survival, we analyzed the mRNA level of HP1α in 270 cases (dataset 1) and 27 cases (dataset 2), respectively. High expression of HP1α was associated with pool survival [a median survival of 11 months in the high-expressing cases vs. 24 months in the low-expressing cases for dataset 1 (P = 0.00003, log rank) and 9 months in the high-expressing cases vs. 25 months in the lowexpressing cases for dataset 2 (P = 0.027, log rank)] (Fig. 1I,J).
9
ACCEPTED MANUSCRIPT
Depletion of HP1α and SUV39H1 reduces survival of glioma cells In order to test whether HP1α and H3K9me3 are connected to glioma progression, we performed
RI PT
RNA interference assays. GOS3, 1321N1 and T98G cells were transiently transfected with negative control-siRNA, HP1α-siRNA, or SUV39H1-siRNA, and analyzed by western blotting (Fig. 2A-F). HP1α expressions were significantly reduced in HP1α siRNA 1 or siRNA 2 treated cells compared to negative control cells (Fig. 2A-C). SUV39H1 expression was also much less in
SC
SUV39H1 siRNA transfected cells than in negative control cells (Fig. 2D-F), but another H3K9 methylation enzyme G9a was not significantly changed (Fig. 2A-F). SUV39H1 protein level was
M AN U
not significantly affected by HP1α knockdown (Fig. 2A), and vice versa (Fig. 2D). To test whether high expression levels of HP1α are required for glioma cell survival, we analyzed cell apoptosis by flow cytometry. HP1α depleted cells showed a highly increased apoptotic cell percentage. HP1α siRNA 1 induced 23% increase of apoptotic cell percentage and HP1α siRNA 2 induced 21% in GOS3 cells (Fig. 2G). SUV39H1 depleted cells also revealed an increased percentage of apoptotic cells (by 18% in GOS3 cells) (Fig. 2G). Similar results were
TE D
obtained in 1321N1 cells (Fig. 2H) and (Fig. 2I). These data suggests that HP1α and SUV39H1 contribute to glioma cells survival by inhibiting cell apoptosis.
HP1α and H3K9me3 regulate the expression of FAS and PUMA
EP
To further investigate the mechanisms by which HP1α and SUV39H1 promote glioma cell survival, we performed HP1α and H3K9me3 chromatin immunoprecipitation assays (ChIP).
AC C
It showed that HP1α and H3K9me3 had higher enrichment at the FAS and PUMA promoters instead of Actin promoter in GOS3 cells than in NHA cells (Fig. 3A-C). With depletion of HP1α, enrichment of HP1α at the FAS and PUMA promoters were significantly weakened (Fig. 3A-C). H3K9me3 at the FAS and PUMA promoters was also slightly affected by HP1α depletion (Fig. 3A-C). FAS and PUMA are essential activators of apoptosis and suppress tumor progression [40; 41]. Consistant with the ChIP results, FAS and PUMA protein levels were much lower in GOS3 cells than NHA cells (Fig. 3D). With HP1α depletion, FAS and PUMA protein levels were significantly elevated (Fig. 3E).
10
ACCEPTED MANUSCRIPT
By performing HP1α and H3K9me3 ChIP assays using glioma tissues, we observed that HP1α and H3K9me3 were accumulated at FAS and PUMA promoters in three grades (grade 2, grade 3, and grade 4) of glioma tissues (Fig. 3F-H). FAS and PUMA proteins were much less in the glioma tissues than in normal brain (Fig. 3I).
apoptosis by suppressing expression of FAS and PUMA.
RI PT
Therefore, these results indicate that up-regulated H3K9me3 and HP1α prevent cell
SC
Depletion of HP1α and SUV39H1 weakens proliferation ability of glioma cells
Further, we examined glioma cells proliferation by MTT assays after HP1α and SUV39H1 depletion. GOS3 and 1321N1 cells proliferation in SUV39H1 depleted cells was decreased
M AN U
compared to negative control cells (Fig. 4A-B). Especially at the 48 h time point, the proliferation was significantly reduced (P<0.05) (Fig. 4A-B). HP1α depletion also induced a remarkable decrease of cell proliferation in both GOS3 and 1321N1 cells (P<0.01) (Fig. 4A-B). To further determine whether HP1α and SUV39H1 were necessary for the growth of GOS3 and 1321N1 cells, we measured S phase entry by determining the rate of BrdU incorporation of cells treated with siRNAs. The rates of BrdU incorporation were remarkably reduced with HP1α
TE D
suppression by 20% (siRNA 1) and 16% (siRNA 2) (Fig. 4C-D). The percentage of BrdU positive cells was also decreased (by 12%) with SUV39H1 suppression (Fig. 4C-D). The similar percentage decrease of BrdU cells were also observed in 1321N1 cells (Fig. 4E). Therefore, these data suggests the suppressive effects of HP1α and SUV39H1 depletion in the proliferation
AC C
EP
capacity of glioma cells.
11
ACCEPTED MANUSCRIPT
Discussion In our study, we find the high protein levels of HP1α, and high level of trimethylation in Histone H3 Lysine 9 in glioma cell lines and glioma tumor tissues. Depletion of HP1α and SUV39H1 attenuates glioma cell proliferation and increases cell apoptosis. HP1α and H3K9me3 are
RI PT
aberrantly enriched at the promoters of two apoptosis activators FAS and PUMA in both glioma cells and tissues. Our data indicates HP1α and H3K9me3 are functionally associated with glioma cell viability and proliferation capability. Therefore, HP1α and H3K9me3 may be biomarkers of gliomas, and study of epigenetic regulation in glioma cells potentially promotes novel and more
SC
efficient therapy strategy development.
Brain tumors are characterized by alterations in genetic and epigenetic mechanisms [7].
M AN U
The importance of Histone modifications have begun being revealed in glioma progression [22; 30; 39]. Understanding the molecular basis of roles of epigenetic factors in tumorigenesis and cancer cell survival or death potentially facilitates novel therapeutic progression. Unlike genetic alteration, epigenetic changes are more reversible [25; 29]. Histone lysine methylation is a dynamic process and the maintenance of epigenetic marks on Histones highly relies on the related modification enzymes [23; 26], and its effect to the cells is mainly achieved
TE D
by recruiting its readers [26]. SUV39H1 and H3K9me3 are up-regulated in some glioma cells lines, and the roles of H3K9me3 in glial cell differentiation and in affecting high-grade astrocytomas patients’ survival have been implicated [30]. HP1α, an essential reader of H3K9me3, has been reported to be required for
EP
tumorigenicity and aggressiveness of lung carcinoma in vivo, and high expression level of HP1α protein negatively correlates with patient survival [42]. We found that HP1α was up-regulated in
AC C
glioma cells and tissues. High level of HP1α and H3K9me3 in glioma cells could function cooperatively in inducing aberrant chromatin domain silencing and promoting cell survival and proliferation. Elevated SUV39H1 expression level could contribute to establishment and maintenance of a high level of H3K9me3 [30], which is recognized by HP1 proteins and acts as a binding site for HP1 proteins [26]. H3K9me3 in the glioma cells may be accumulated in the transcriptionally active chromatin region, which further results in aberrant enrichment of HP1α proteins in these H3K9me3 sites and abnormal silent chromatin domains formation, and represses some specific genes that are supposed to be active in normal cells. We have found that HP1α and H3K9me3 were accumulated in the FAS and PUMA promoters. Therefore, HP1α and 12
ACCEPTED MANUSCRIPT
H3K9me3 possibly prevent cell apoptosis by targeting apoptotic activators, including FAS and PUMA [40; 41]. There may be cooperation between high levels of HP1α and SUV39H1 in glioma cells as well. By interacting with SUV39H1, highly expressed HP1α may promote the recruitment of
RI PT
SUV39H1 to the sites to reinforce the silencing and contribute to the maintenance of high-level H3K9me3 in glioma cells. However, knockdown of HP1α or SUV39H1 did not significantly decrease the protein level of each other (Fig. 2 A and D). Therefore, induction of proliferation and apoptosis change after HP1α knockdown is most likely independent of SUV39H1 and vice
AC C
EP
TE D
M AN U
SC
versa.
13
ACCEPTED MANUSCRIPT
Acknowledgement This work was supported by the Jiangxi Provincial Science and Technology Department funding
AC C
EP
TE D
M AN U
SC
RI PT
(20161BBH80075).
14
ACCEPTED MANUSCRIPT
Conflict of Interest
AC C
EP
TE D
M AN U
SC
RI PT
We declare that we have no conflict of interest.
15
ACCEPTED MANUSCRIPT
Reference
AC C
EP
TE D
M AN U
SC
RI PT
[1] M.D. Walker, S.B. Green, D.P. Byar, E. Alexander, Jr., U. Batzdorf, W.H. Brooks, W.E. Hunt, C.S. MacCarty, M.S. Mahaley, Jr., J. Mealey, Jr., G. Owens, J. Ransohoff, 2nd, J.T. Robertson, W.R. Shapiro, K.R. Smith, Jr., C.B. Wilson, and T.A. Strike, Randomized comparisons of radiotherapy and nitrosoureas for the treatment of malignant glioma after surgery. N Engl J Med 303 (1980) 1323-9. [2] S. Bao, Q. Wu, R.E. McLendon, Y. Hao, Q. Shi, A.B. Hjelmeland, M.W. Dewhirst, D.D. Bigner, and J.N. Rich, Glioma stem cells promote radioresistance by preferential activation of the DNA damage response. Nature 444 (2006) 756-60. [3] D. Sturm, H. Witt, V. Hovestadt, D.A. Khuong-Quang, D.T. Jones, C. Konermann, E. Pfaff, M. Tonjes, M. Sill, S. Bender, M. Kool, M. Zapatka, N. Becker, M. Zucknick, T. Hielscher, X.Y. Liu, A.M. Fontebasso, M. Ryzhova, S. Albrecht, K. Jacob, M. Wolter, M. Ebinger, M.U. Schuhmann, T. van Meter, M.C. Fruhwald, H. Hauch, A. Pekrun, B. Radlwimmer, T. Niehues, G. von Komorowski, M. Durken, A.E. Kulozik, J. Madden, A. Donson, N.K. Foreman, R. Drissi, M. Fouladi, W. Scheurlen, A. von Deimling, C. Monoranu, W. Roggendorf, C. Herold-Mende, A. Unterberg, C.M. Kramm, J. Felsberg, C. Hartmann, B. Wiestler, W. Wick, T. Milde, O. Witt, A.M. Lindroth, J. Schwartzentruber, D. Faury, A. Fleming, M. Zakrzewska, P.P. Liberski, K. Zakrzewski, P. Hauser, M. Garami, A. Klekner, L. Bognar, S. Morrissy, F. Cavalli, M.D. Taylor, P. van Sluis, J. Koster, R. Versteeg, R. Volckmann, T. Mikkelsen, K. Aldape, G. Reifenberger, V.P. Collins, J. Majewski, A. Korshunov, P. Lichter, C. Plass, N. Jabado, and S.M. Pfister, Hotspot mutations in H3F3A and IDH1 define distinct epigenetic and biological subgroups of glioblastoma. Cancer Cell 22 425-37. [4] A. Poh, Two Unique Glioma Subtypes Revealed. Cancer Discov 6 334-5. [5] L.A. Stewart, Chemotherapy in adult high-grade glioma: a systematic review and meta-analysis of individual patient data from 12 randomised trials. Lancet 359 (2002) 1011-8. [6] H.G. Wirsching, C. Happold, P. Roth, and M. Weller, Management of diffusely infiltrating glioma in the elderly. Curr Opin Oncol 27 502-9. [7] A. Spyropoulou, C. Piperi, C. Adamopoulos, and A.G. Papavassiliou, Deregulated chromatin remodeling in the pathobiology of brain tumors. Neuromolecular Med 15 1-24. [8] A. Amelot, P. De Cremoux, V. Quillien, M. Polivka, H. Adle-Biassette, J. Lehmann-Che, L. Francoise, A.F. Carpentier, B. George, E. Mandonnet, and S. Froelich, IDH-Mutation Is a Weak Predictor of Long-Term Survival in Glioblastoma Patients. PLoS One 10 e0130596. [9] S. Leu, S. von Felten, S. Frank, J.L. Boulay, and L. Mariani, IDH mutation is associated with higher risk of malignant transformation in low-grade glioma. J Neurooncol 127 363-72. [10] K. Tanaka, T. Sasayama, K. Mizukawa, K. Takata, N.S. Sulaiman, M. Nishihara, M. Kohta, R. Sasaki, T. Hirose, T. Itoh, and E. Kohmura, Combined IDH1 mutation and MGMT methylation status on long-term survival of patients with cerebral low-grade glioma. Clin Neurol Neurosurg 138 37-44. [11] P. Yang, W. Zhang, Y. Wang, X. Peng, B. Chen, X. Qiu, G. Li, S. Li, C. Wu, K. Yao, W. Li, W. Yan, J. Li, Y. You, C.C. Chen, and T. Jiang, IDH mutation and MGMT promoter methylation in glioblastoma: results of a prospective registry. Oncotarget 6 40896-906. [12] W. Cheng, M. Li, Y. Jiang, C. Zhang, J. Cai, K. Wang, and A. Wu, Association between small heat shock protein B11 and the prognostic value of MGMT promoter methylation in patients with high-grade glioma. J Neurosurg 125 7-16. [13] M. Berdasco, S. Ropero, F. Setien, M.F. Fraga, P. Lapunzina, R. Losson, M. Alaminos, N.K. Cheung, N. Rahman, and M. Esteller, Epigenetic inactivation of the Sotos overgrowth syndrome gene histone methyltransferase NSD1 in human neuroblastoma and glioma. Proc Natl Acad Sci U S A 106 (2009) 21830-5. 16
ACCEPTED MANUSCRIPT
AC C
EP
TE D
M AN U
SC
RI PT
[14] B.C. Christensen, A.A. Smith, S. Zheng, D.C. Koestler, E.A. Houseman, C.J. Marsit, J.L. Wiemels, H.H. Nelson, M.R. Karagas, M.R. Wrensch, K.T. Kelsey, and J.K. Wiencke, DNA methylation, isocitrate dehydrogenase mutation, and survival in glioma. J Natl Cancer Inst 103 143-53. [15] J.G. Herman, A. Merlo, L. Mao, R.G. Lapidus, J.P. Issa, N.E. Davidson, D. Sidransky, and S.B. Baylin, Inactivation of the CDKN2/p16/MTS1 gene is frequently associated with aberrant DNA methylation in all common human cancers. Cancer Res 55 (1995) 4525-30. [16] M. Weller, R. Stupp, G. Reifenberger, A.A. Brandes, M.J. van den Bent, W. Wick, and M.E. Hegi, MGMT promoter methylation in malignant gliomas: ready for personalized medicine? Nat Rev Neurol 6 39-51. [17] D. Castel, C. Philippe, R. Calmon, L. Le Dret, N. Truffaux, N. Boddaert, M. Pages, K.R. Taylor, P. Saulnier, L. Lacroix, A. Mackay, C. Jones, C. Sainte-Rose, T. Blauwblomme, F. Andreiuolo, S. Puget, J. Grill, P. Varlet, and M.A. Debily, Histone H3F3A and HIST1H3B K27M mutations define two subgroups of diffuse intrinsic pontine gliomas with different prognosis and phenotypes. Acta Neuropathol 130 815-27. [18] K.M. Chan, J. Han, D. Fang, H. Gan, and Z. Zhang, A lesson learned from the H3.3K27M mutation found in pediatric glioma: a new approach to the study of the function of histone modifications in vivo? Cell Cycle 12 2546-52. [19] S. Kallappagoudar, R.K. Yadav, B.R. Lowe, and J.F. Partridge, Histone H3 mutations--a special role for H3.3 in tumorigenesis? Chromosoma 124 177-89. [20] G. Wu, A. Broniscer, T.A. McEachron, C. Lu, B.S. Paugh, J. Becksfort, C. Qu, L. Ding, R. Huether, M. Parker, J. Zhang, A. Gajjar, M.A. Dyer, C.G. Mullighan, R.J. Gilbertson, E.R. Mardis, R.K. Wilson, J.R. Downing, D.W. Ellison, and S.J. Baker, Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas. Nat Genet 44 251-3. [21] D.A. Khuong-Quang, P. Buczkowicz, P. Rakopoulos, X.Y. Liu, A.M. Fontebasso, E. Bouffet, U. Bartels, S. Albrecht, J. Schwartzentruber, L. Letourneau, M. Bourgey, G. Bourque, A. Montpetit, G. Bourret, P. Lepage, A. Fleming, P. Lichter, M. Kool, A. von Deimling, D. Sturm, A. Korshunov, D. Faury, D.T. Jones, J. Majewski, S.M. Pfister, N. Jabado, and C. Hawkins, K27M mutation in histone H3.3 defines clinically and biologically distinct subgroups of pediatric diffuse intrinsic pontine gliomas. Acta Neuropathol 124 439-47. [22] A. Sepsa, G. Levidou, A. Gargalionis, C. Adamopoulos, A. Spyropoulou, G. Dalagiorgou, I. Thymara, E. Boviatsis, M.S. Themistocleous, K. Petraki, G. Vrettakos, V. Samaras, A. Zisakis, E. Patsouris, C. Piperi, and P. Korkolopoulou, Emerging role of linker histone variant H1x as a biomarker with prognostic value in astrocytic gliomas. A multivariate analysis including trimethylation of H3K9 and H4K20. PLoS One 10 e0115101. [23] L. Fritsch, P. Robin, J.R. Mathieu, M. Souidi, H. Hinaux, C. Rougeulle, A. Harel-Bellan, M. AmeyarZazoua, and S. Ait-Si-Ali, A subset of the histone H3 lysine 9 methyltransferases Suv39h1, G9a, GLP, and SETDB1 participate in a multimeric complex. Mol Cell 37 46-56. [24] A.J. Bannister, P. Zegerman, J.F. Partridge, E.A. Miska, J.O. Thomas, R.C. Allshire, and T. Kouzarides, Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410 (2001) 120-4. [25] M. Garcia-Cao, R. O'Sullivan, A.H. Peters, T. Jenuwein, and M.A. Blasco, Epigenetic regulation of telomere length in mammalian cells by the Suv39h1 and Suv39h2 histone methyltransferases. Nat Genet 36 (2004) 94-9. [26] M. Lachner, D. O'Carroll, S. Rea, K. Mechtler, and T. Jenuwein, Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 410 (2001) 116-20. [27] A.H. Peters, D. O'Carroll, H. Scherthan, K. Mechtler, S. Sauer, C. Schofer, K. Weipoltshammer, M. Pagani, M. Lachner, A. Kohlmaier, S. Opravil, M. Doyle, M. Sibilia, and T. Jenuwein, Loss of the
17
ACCEPTED MANUSCRIPT
AC C
EP
TE D
M AN U
SC
RI PT
Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability. Cell 107 (2001) 323-37. [28] K. Yamamoto, and M. Sonoda, Self-interaction of heterochromatin protein 1 is required for direct binding to histone methyltransferase, SUV39H1. Biochem Biophys Res Commun 301 (2003) 28792. [29] S.J. Nielsen, R. Schneider, U.M. Bauer, A.J. Bannister, A. Morrison, D. O'Carroll, R. Firestein, M. Cleary, T. Jenuwein, R.E. Herrera, and T. Kouzarides, Rb targets histone H3 methylation and HP1 to promoters. Nature 412 (2001) 561-5. [30] A. Spyropoulou, A. Gargalionis, G. Dalagiorgou, C. Adamopoulos, K.A. Papavassiliou, R.W. Lea, C. Piperi, and A.G. Papavassiliou, Role of histone lysine methyltransferases SUV39H1 and SETDB1 in gliomagenesis: modulation of cell proliferation, migration, and colony formation. Neuromolecular Med 16 70-82. [31] Y. Nakazato, [The 4th Edition of WHO Classification of Tumours of the Central Nervous System published in 2007]. No Shinkei Geka 36 (2008) 473-91. [32] Q. Wu, R. He, H. Zhou, A.C. Yu, B. Zhang, J. Teng, and J. Chen, Cep57, a NEDD1-binding pericentriolar material component, is essential for spindle pole integrity. Cell Res 22 1390-401. [33] Y. Lee, A.C. Scheck, T.F. Cloughesy, A. Lai, J. Dong, H.K. Farooqi, L.M. Liau, S. Horvath, P.S. Mischel, and S.F. Nelson, Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age. BMC Med Genomics 1 (2008) 52. [34] L.A. Gravendeel, M.C. Kouwenhoven, O. Gevaert, J.J. de Rooi, A.P. Stubbs, J.E. Duijm, A. Daemen, F.E. Bleeker, L.B. Bralten, N.K. Kloosterhof, B. De Moor, P.H. Eilers, P.J. van der Spek, J.M. Kros, P.A. Sillevis Smitt, M.J. van den Bent, and P.J. French, Intrinsic gene expression profiles of gliomas are a better predictor of survival than histology. Cancer Res 69 (2009) 9065-72. [35] H. Zhou, T. Wang, T. Zheng, J. Teng, and J. Chen, Cep57 is a Mis12-interacting kinetochore protein involved in kinetochore targeting of Mad1-Mad2. Nat Commun 7 10151. [36] J.M. Espinosa, R.E. Verdun, and B.M. Emerson, p53 functions through stress- and promoter-specific recruitment of transcription initiation components before and after DNA damage. Mol Cell 12 (2003) 1015-27. [37] L. Cai, X. Ma, Y. Huang, Y. Zou, and X. Chen, Aberrant histone methylation and the effect of Suv39H1 siRNA on gastric carcinoma. Oncol Rep 31 2593-600. [38] T. Chiba, T. Saito, K. Yuki, Y. Zen, S. Koide, N. Kanogawa, T. Motoyama, S. Ogasawara, E. Suzuki, Y. Ooka, A. Tawada, M. Otsuka, M. Miyazaki, A. Iwama, and O. Yokosuka, Histone lysine methyltransferase SUV39H1 is a potent target for epigenetic therapy of hepatocellular carcinoma. Int J Cancer 136 289-98. [39] Y. Yokoyama, M. Hieda, Y. Nishioka, A. Matsumoto, S. Higashi, H. Kimura, H. Yamamoto, M. Mori, S. Matsuura, and N. Matsuura, Cancer-associated upregulation of histone H3 lysine 9 trimethylation promotes cell motility in vitro and drives tumor formation in vivo. Cancer Sci 104 889-95. [40] S. Nagata, A death factor--the other side of the coin. Behring Inst Mitt (1996) 1-11. [41] J. Yu, and L. Zhang, PUMA, a potent killer with or without p53. Oncogene 27 Suppl 1 (2008) S71-83. [42] Y.H. Yu, G.Y. Chiou, P.I. Huang, W.L. Lo, C.Y. Wang, K.H. Lu, C.C. Yu, G. Alterovitz, W.C. Huang, J.F. Lo, H.S. Hsu, and S.H. Chiou, Network biology of tumor stem-like cells identified a regulatory role of CBX5 in lung cancer. Sci Rep 2 584.
18
ACCEPTED MANUSCRIPT
Figure Legends Figure 1. The expression of HP1α protein is increased in glioma cells and tissues. (A) Western blots showing levels of HP1α protein and Histone H3K9me3 in NHA, GOS3, DBTRG05MGT98G, ANGM-CSS, and 1321N1 cells. Actin protein levels were used as control. (B-C)
RI PT
Quantification of HP1α protein level (B) and H3K9me3 level (C) in NHA, GOS3, DBTRG05MGT98G, ANGM-CSS, and 1321N1 cells. The signals were normalized to Actin, and the signal from NHA cells was normalized to 1.0. (D) Western blots showing levels of HP1α protein and Histone H3K9me3 in Grade 2, Grade 3, and Grade 4 glioma tissues, and normal brain. Actin
SC
protein levels were used as control. (E-F) Quantification of HP1α protein level (E) and H3K9me3 level (F) in glioma tissues and normal brain. The signals were normalized to Actin,
M AN U
and the signal from NHA cells was normalized to 1.0. (G) Quantitative PCR showing levels of HP1α mRNA in glioma tissues and normal brain. Actin mRNA level was used as control. (H) Quantification of HP1α mRNA level in glioma tissues and normal brain. The signals were normalized to Actin, and the signal from NHA cells was normalized to 1.0. Each experiment was repeated three times. Data are mean ± s.e.m.. ***P<0.001; **P<0.01. (I-J) The role of HP1α in gliomas was suggested by analyzing gene expression profiling data from two independent data
TE D
sets of the brain cancer, dataset 1 (I) and dataset 2 (J). Kaplan-Meier curves of survival for 270 patients and 27 patients are presented. Samples were separated into high (red) and low (green) HP1α expression groups by recursive partitioning method.
EP
Figure 2. HP1α prevents apoptosis of GOS3, 1321N1 and T98G cells. (A-C) Western blots showing knockdown of HP1α in GOS3 (A), 1321N1 (B), and T98G (C) cells by siRNA
AC C
transfection for 48 h. NC, negative control. (D-F) Western blots showing knockdown of SUV39H1 in GOS3 (D), 1321N1 (E), and T98G (F) cells by siRNA transfection for 48 h. NC, negative control. (G-I) Quantification of apoptotic cells after indicated siRNA treatment in GOS3 (G), 1321N1 (H), T98G (I) cells. Annecin V/propidium iodide double staining was performed to label the apoptotic cells. The ratio of apoptotic cells was calculated. NC, negative control. Each experiment was repeated three times. Data are mean ± s.e.m.. **P<0.01; ***P<0.001.
Figure 3. HP1α and H3K9me3 repress expression of FAS and PUMA. (A-C) NHA, GOS3 wild type cells, and HP1α siRNA-transfected GOS3 cells were used for chromatin 19
ACCEPTED MANUSCRIPT
immunoprecipitation (ChIP) with non-immune mouse IgG, anti-HP1α and anti-H3K9me3 antibodies. ChIPs were quantified by RT-qPCR, normalized relatively to input DNA, and the % recovery for ChIP is plotted on the y-axis. Actin (A), FAS (B) and PUMA (C) promoters were analyzed. (D) Western blots showing PUMA and FAS protein levels in NHA and GOS3 cells.
RI PT
Actin protein levels were used as control. (E) Western blots showing PUMA and FAS protein levels in GOS3 cells after HP1α depletion. NC, negative control. Actin protein levels were used as control. (F-H) glioma tissues and normal brain were used for chromatin immunoprecipitation (ChIP) with non-immune mouse IgG, anti-HP1α and anti-H3K9me3 antibodies. ChIPs were
SC
quantified by RT-qPCR, normalized relatively to input DNA, and the % recovery for ChIP is plotted on the y-axis. Actin (F), FAS (G) and PUMA (H) promoters were analyzed. (I) Western
M AN U
blots showing PUMA and FAS protein levels in glioma tissues and normal brain. Actin protein levels were used as control.
Figure 4. HP1α facilitates GOS3 and 1321N1 cell proliferation. (A, B) MTT proliferation assays of GOS3 (A) and 1321N1 (B) cells transfected with negative-siRNA, SUV39H1-siRNA, HP1α-siRNA 1, and HP1α-siRNA 2 for 24 h or 48 h. Each experiment was repeated three times.
TE D
Data are mean ± s.e.m.. *P<0.05; **P<0.01; ***P<0.001. (C) BrdU incorporation assays of GOS3 cells. Cells were transfected with negative-siRNA, SUV39H1-siRNA, HP1α-siRNA 1, and HP1α-siRNA 2 for 48 h, followed by immunofluorescence of BrdU (red). DNA was stained with DAPI. Scale bar, 10 um. (D) Quantification of percentage of BrdU positive cells from (C).
EP
Each experiment was repeated three times. Data are mean ± s.e.m.. *P<0.05; **P<0.01. (E) Quantification of percentage of BrdU positive 1321N1 cells transfected with negative-siRNA,
AC C
SUV39H1-siRNA, HP1α-siRNA 1, and HP1α-siRNA 2 for 48 h. Each experiment was repeated three times. Data are mean ± s.e.m.. *P<0.05; **P<0.01.
20
AC C
EP
TE D
M AN U
SC
RI PT
ACCEPTED MANUSCRIPT
21
AC C
EP
TE D
M AN U
SC
RI PT
ACCEPTED MANUSCRIPT
22
AC C
EP
TE D
M AN U
SC
RI PT
ACCEPTED MANUSCRIPT
23
AC C
EP
TE D
M AN U
SC
RI PT
ACCEPTED MANUSCRIPT
24
ACCEPTED MANUSCRIPT
AC C
EP
TE D
M AN U
SC
RI PT
HP1α and H3K9me3 are upregulated in gliomas Depletion of HP1α results in apoptosis. HP1α and H3K9me3 suppress expression of FAS and PUMA.