- Email: [email protected]
Nomenclature for Factors of the HLA System, update February 2007
Human Immunology (2007) 68, 623– 625
Nomenclature for Factors of the HLA System, update February 2007 Compiled by Steven G. E. Marsh* for the WHO Nomenclature Committee for Factors of the HLA System The following sequences have been submitted to the Nomenclature Committee since the January 2007 nomenclature update and, following agreed policy, have been assigned official allele designations. Full details of all sequences will be published in a forthcoming report. Below are listed the newly assigned sequences (Table 1) and confirmations of previously reported sequences (Table 2). The accession number of each sequence is given; these can be used to retrieve the sequence files from the EMBL, GenBank, or DDBJ data libraries. Although accession numbers have been assigned by the data libraries Websites: www.anthonynolan.org.uk/HIG; www.ebi.ac.uk/imgt/hla * Corresponding author. Fax : (44) 20 7284-8331. E-mail address: [email protected] (S.G.E. Marsh).
and most sequences are already available, there is still the possibility that an author may not yet have allowed the sequence to be released, in such a case you will have to contact the submitting author directly. Additional information pertaining to new sequences is often included in the publications describing these alleles; a list of recent publications that describe new HLA sequences is given in Table 3. All new and confirmatory sequences should now be submitted directly to the WHO Nomenclature Committee for Factors of the HLA System via the IMGT/HLA Database using the sequence submission tool provided. The IMGT/HLA Database may be accessed via the World Wide Web at: www. ebi.ac.uk/imgt/hla.
0198-8859/$ -see front matter © 2007 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved. doi:10.1016/j.humimm.2007.04.001
624 Table 1
S.G.E. Marsh for WHO Nomenclature Committee New sequences
Sequence
Cell identification
Accession number
Submitting author
A*110107 A*260105 A*3021 A*3310 A*9212 B*0753 B*0754 B*0833 B*130204 B*1826 B*270510 B*3574 B*3575 B*3816 B*4072 B*440303 B*4610 B*5526 B*5620 B*9527 Cw*010205 Cw*0115 Cw*0116 Cw*0117 Cw*0118 Cw*0218 Cw*030406 Cw*030407 Cw*0336 Cw*0337 Cw*0338 Cw*0339 Cw*0425 Cw*0426 Cw*0427 Cw*0615 Cw*0616N Cw*0747 Cw*0748 Cw*1221 Cw*1518 Cw*1519 Cw*1520 Cw*1803 DRB1*030104 DRB1*0332 DRB1*0464 DRB1*110404 DRB1*1161
TBC63500 TBC63337 BY00146 NT00715 TBC63782 NT00714 NT00718 ADBA10260AN NT00706 K110228 93520 NT00704 DGLM1 BT00710 TAKA87874AN 93455 NT00708 NT00719 R06-978 93977 277745 241551 250226 255993 277100 250052 275410 277614 277287 250072 280091 P973 238305 266302 277012 250288 279827 257299 281146 BY00148 258119 280144 280716 280415 VTIS65942 VTIS103774 C136004 028807 157429
AB292218 AB292217 EF422076 EF375695 AB292417 EF375692 EF422078 AM492196 EF375690 AM492197 EF215529 EF375689 EF426474 EF375691 AM491776 EF215530 EF375698 EF422080 AM422124 EF215531 AM422978 AM422968 AM422972 AM489405 AM422975 AM422969 AM489409 AM422977 AM422976 AM422970 AM422980 EF422359 AM422966 AM489408 AM422974 AM422973 AM422979 AM489406 AM422964 EF422081 AM489407 AM422981 AM422983 AM422982 DQ133168 DQ133169 EF158822 AM491357 AM490640
Masahiro Satake, Tokyo, Japan Masahiro Satake, Tokyo, Japan Carolyn K. Hurley, Washington, DC, USA Carolyn K. Hurley, Washington, DC, USA Masahiro Satake, Tokyo, Japan Carolyn K. Hurley, Washington, DC, USA Carolyn K. Hurley, Washington, DC, USA Ann-Margaret Little, London, UK Carolyn K. Hurley, Washington, DC, USA Ann-Margaret Little, London, UK Mary Sue Leffell, Baltimore, USA Carolyn K. Hurley, Washington, DC, USA Lia Mele, Alessandria, Italy Carolyn K. Hurley, Washington, DC, USA Ann-Margaret Little, London, UK Mary Sue Leffell, Baltimore, USA Carolyn K. Hurley, Washington, DC, USA Carolyn K. Hurley, Washington, DC, USA Jean-Marie Tiercy, Geneva, Switzerland Mary Sue Leffell, Baltimore, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Chengya Wang, Nanjing, China Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Carolyn K. Hurley, Washington, DC, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Brian D. Tait, Melbourne, Australia Brian D. Tait, Melbourne, Australia Robert Endres, Tempe, USA Francesca Poli, Milan, Italy Francesca Poli, Milan, Italy
625
HLA nomenclature update Table 2
Confirmatory sequences
Sequence
Cell identification
Accession number
Submitting author
A*01010101 A*0260 A*0322 A*3402 B*0737 B*1568 B*350402 B*3526 B*3548 B*3937 B*5120 B*5122 B*550104 B*560501 B*5711 B*670102 Cw*0335 Cw*0507N Cw*0743 Cw*0746 G*0106
APD NT00703 NT00717 NT00702 NT00737 H050-2 NT00716 NT00705 NT00707 NT00712 NT00709 NT00711a BY00145 TBC63580 NT00721 TBC63059 237313 BY00147 250097 238921 APD
CR759913 EF370118 EF422079 EF370117 EF375693 EF101896 EF375696 EF375688 EF375687 EF375694 EF375697 EF375685 EF370119 AB292219 EF422077 AB292220 AM422965 EF422082 AM422971 AM422967 CR925767
Stephan Beck, Cambridge, UK Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Chengya Wang, Nanjing, China Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Masahiro Satake, Tokyo, Japan Carolyn K. Hurley, Washington, DC, Masahiro Satake, Tokyo, Japan Tatiana Lebedeva, Dedham, USA Carolyn K. Hurley, Washington, DC, Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Stephan Beck, Cambridge, UK
References [1] Crowley J, Dunne C, Cox ST, Little AM. An unlikely rare result of HLA-A*0236, *3601 masking the presence of a novel allele A*0114. Tissue Antigens 2000;69:200.
Table 3
Recently published sequences
Sequence A*0114 A*68020102 B*1314 B*5522 Cw*0331 DRB1*0331 DRB1*1375
Reference [1] [2] [3] [4] [5] [6] [7]
USA USA USA USA USA USA USA USA USA USA USA USA
USA
[2] Longhi E, Frison S, Andreini E, Haworth S, Malagoli A, Carella G, Crespiatico L, Poli F, Scalamogna M. Complete sequencing of the HLA-A*68020102 novel allele identified in two Caucasoid families. Hum Immunol 2007;68:206. [3] Witter K, Zahn R, Lubke S, Albert T, Kauke T. A novel HLA-B*13 allele, B*1314, was found through routine HLA class I sequencespecific oligonucleotide typing and confirmed by sequencebased HLA typing. Tissue Antigens 2007;69:201. [4] Yan LX, Zhu FM, Zhang W. Sequence analysis of the novel allele HLA-B*5522 in the Chinese population. Tissue Antigens 2007;69:202. [5] Nesci S, Malagoli A, Iliescu A, Buffi O, Carella G. Characterization of the novel allele HLA-Cw*0331 by sequence-based typing. Tissue Antigens 2007;69:203. [6] Yang KL, Chu CC, Huang CH, Lin SZ, Hsu WL, Liu DW, Lin PY. Discovery of HLA-DRB1*0331 in a Taiwanese marrow donor and the importance of sequence-based typing in a rare or previously unrecognized allele. Int J Immunogenet 2007;34:91. [7] Sanchez-Gordo F, Balas A, Ortiz M, Prat I, Vicario JL. A new human leukocyte antigen DRB1 allele, HLA-DRB1*1375. Tissue Antigens 2007;69:204.
Nomenclature for Factors of the HLA System, update February 2007 Compiled by Steven G. E. Marsh* for the WHO Nomenclature Committee for Factors of the HLA System The following sequences have been submitted to the Nomenclature Committee since the January 2007 nomenclature update and, following agreed policy, have been assigned official allele designations. Full details of all sequences will be published in a forthcoming report. Below are listed the newly assigned sequences (Table 1) and confirmations of previously reported sequences (Table 2). The accession number of each sequence is given; these can be used to retrieve the sequence files from the EMBL, GenBank, or DDBJ data libraries. Although accession numbers have been assigned by the data libraries Websites: www.anthonynolan.org.uk/HIG; www.ebi.ac.uk/imgt/hla * Corresponding author. Fax : (44) 20 7284-8331. E-mail address: [email protected] (S.G.E. Marsh).
and most sequences are already available, there is still the possibility that an author may not yet have allowed the sequence to be released, in such a case you will have to contact the submitting author directly. Additional information pertaining to new sequences is often included in the publications describing these alleles; a list of recent publications that describe new HLA sequences is given in Table 3. All new and confirmatory sequences should now be submitted directly to the WHO Nomenclature Committee for Factors of the HLA System via the IMGT/HLA Database using the sequence submission tool provided. The IMGT/HLA Database may be accessed via the World Wide Web at: www. ebi.ac.uk/imgt/hla.
0198-8859/$ -see front matter © 2007 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved. doi:10.1016/j.humimm.2007.04.001
624 Table 1
S.G.E. Marsh for WHO Nomenclature Committee New sequences
Sequence
Cell identification
Accession number
Submitting author
A*110107 A*260105 A*3021 A*3310 A*9212 B*0753 B*0754 B*0833 B*130204 B*1826 B*270510 B*3574 B*3575 B*3816 B*4072 B*440303 B*4610 B*5526 B*5620 B*9527 Cw*010205 Cw*0115 Cw*0116 Cw*0117 Cw*0118 Cw*0218 Cw*030406 Cw*030407 Cw*0336 Cw*0337 Cw*0338 Cw*0339 Cw*0425 Cw*0426 Cw*0427 Cw*0615 Cw*0616N Cw*0747 Cw*0748 Cw*1221 Cw*1518 Cw*1519 Cw*1520 Cw*1803 DRB1*030104 DRB1*0332 DRB1*0464 DRB1*110404 DRB1*1161
TBC63500 TBC63337 BY00146 NT00715 TBC63782 NT00714 NT00718 ADBA10260AN NT00706 K110228 93520 NT00704 DGLM1 BT00710 TAKA87874AN 93455 NT00708 NT00719 R06-978 93977 277745 241551 250226 255993 277100 250052 275410 277614 277287 250072 280091 P973 238305 266302 277012 250288 279827 257299 281146 BY00148 258119 280144 280716 280415 VTIS65942 VTIS103774 C136004 028807 157429
AB292218 AB292217 EF422076 EF375695 AB292417 EF375692 EF422078 AM492196 EF375690 AM492197 EF215529 EF375689 EF426474 EF375691 AM491776 EF215530 EF375698 EF422080 AM422124 EF215531 AM422978 AM422968 AM422972 AM489405 AM422975 AM422969 AM489409 AM422977 AM422976 AM422970 AM422980 EF422359 AM422966 AM489408 AM422974 AM422973 AM422979 AM489406 AM422964 EF422081 AM489407 AM422981 AM422983 AM422982 DQ133168 DQ133169 EF158822 AM491357 AM490640
Masahiro Satake, Tokyo, Japan Masahiro Satake, Tokyo, Japan Carolyn K. Hurley, Washington, DC, USA Carolyn K. Hurley, Washington, DC, USA Masahiro Satake, Tokyo, Japan Carolyn K. Hurley, Washington, DC, USA Carolyn K. Hurley, Washington, DC, USA Ann-Margaret Little, London, UK Carolyn K. Hurley, Washington, DC, USA Ann-Margaret Little, London, UK Mary Sue Leffell, Baltimore, USA Carolyn K. Hurley, Washington, DC, USA Lia Mele, Alessandria, Italy Carolyn K. Hurley, Washington, DC, USA Ann-Margaret Little, London, UK Mary Sue Leffell, Baltimore, USA Carolyn K. Hurley, Washington, DC, USA Carolyn K. Hurley, Washington, DC, USA Jean-Marie Tiercy, Geneva, Switzerland Mary Sue Leffell, Baltimore, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Chengya Wang, Nanjing, China Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Carolyn K. Hurley, Washington, DC, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Brian D. Tait, Melbourne, Australia Brian D. Tait, Melbourne, Australia Robert Endres, Tempe, USA Francesca Poli, Milan, Italy Francesca Poli, Milan, Italy
625
HLA nomenclature update Table 2
Confirmatory sequences
Sequence
Cell identification
Accession number
Submitting author
A*01010101 A*0260 A*0322 A*3402 B*0737 B*1568 B*350402 B*3526 B*3548 B*3937 B*5120 B*5122 B*550104 B*560501 B*5711 B*670102 Cw*0335 Cw*0507N Cw*0743 Cw*0746 G*0106
APD NT00703 NT00717 NT00702 NT00737 H050-2 NT00716 NT00705 NT00707 NT00712 NT00709 NT00711a BY00145 TBC63580 NT00721 TBC63059 237313 BY00147 250097 238921 APD
CR759913 EF370118 EF422079 EF370117 EF375693 EF101896 EF375696 EF375688 EF375687 EF375694 EF375697 EF375685 EF370119 AB292219 EF422077 AB292220 AM422965 EF422082 AM422971 AM422967 CR925767
Stephan Beck, Cambridge, UK Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Chengya Wang, Nanjing, China Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Carolyn K. Hurley, Washington, DC, Masahiro Satake, Tokyo, Japan Carolyn K. Hurley, Washington, DC, Masahiro Satake, Tokyo, Japan Tatiana Lebedeva, Dedham, USA Carolyn K. Hurley, Washington, DC, Tatiana Lebedeva, Dedham, USA Tatiana Lebedeva, Dedham, USA Stephan Beck, Cambridge, UK
References [1] Crowley J, Dunne C, Cox ST, Little AM. An unlikely rare result of HLA-A*0236, *3601 masking the presence of a novel allele A*0114. Tissue Antigens 2000;69:200.
Table 3
Recently published sequences
Sequence A*0114 A*68020102 B*1314 B*5522 Cw*0331 DRB1*0331 DRB1*1375
Reference [1] [2] [3] [4] [5] [6] [7]
USA USA USA USA USA USA USA USA USA USA USA USA
USA
[2] Longhi E, Frison S, Andreini E, Haworth S, Malagoli A, Carella G, Crespiatico L, Poli F, Scalamogna M. Complete sequencing of the HLA-A*68020102 novel allele identified in two Caucasoid families. Hum Immunol 2007;68:206. [3] Witter K, Zahn R, Lubke S, Albert T, Kauke T. A novel HLA-B*13 allele, B*1314, was found through routine HLA class I sequencespecific oligonucleotide typing and confirmed by sequencebased HLA typing. Tissue Antigens 2007;69:201. [4] Yan LX, Zhu FM, Zhang W. Sequence analysis of the novel allele HLA-B*5522 in the Chinese population. Tissue Antigens 2007;69:202. [5] Nesci S, Malagoli A, Iliescu A, Buffi O, Carella G. Characterization of the novel allele HLA-Cw*0331 by sequence-based typing. Tissue Antigens 2007;69:203. [6] Yang KL, Chu CC, Huang CH, Lin SZ, Hsu WL, Liu DW, Lin PY. Discovery of HLA-DRB1*0331 in a Taiwanese marrow donor and the importance of sequence-based typing in a rare or previously unrecognized allele. Int J Immunogenet 2007;34:91. [7] Sanchez-Gordo F, Balas A, Ortiz M, Prat I, Vicario JL. A new human leukocyte antigen DRB1 allele, HLA-DRB1*1375. Tissue Antigens 2007;69:204.