Noncovalent complexes of diadenosine 5′,5‴-P1,P4-tetraphosphate with divalent metal ions, biogenic amines, proteins and poly(dT)

Noncovalent complexes of diadenosine 5′,5‴-P1,P4-tetraphosphate with divalent metal ions, biogenic amines, proteins and poly(dT)

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS Pages 1037-1 043 Vol. 120, No. 3, 1984 May 16, 1984 NCNCOVALENT COMPLEXES OF DIADENOSINE 5',5'''...

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BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS Pages 1037-1 043

Vol. 120, No. 3, 1984 May 16, 1984

NCNCOVALENT COMPLEXES OF DIADENOSINE 5',5'''-P j P4-TETRAPHOSPHATE WITH DIVALENT METAL IONS, BIOGENIC AMINES, PROTEINS ANDPOLY(dT) Eggehard Holler Institut fHr Biophysik und physikalische Biochemie, Universit~t Regensburg, Universititsstra~e 3~, D-8400 Regensburg, GFR Received April 10, 1984 SUMMARY: Diadenosine 5',5'''-P q ,P~-tetraphosphate was shown by circular dichroic measurements to bind to metal ions (Mg 2+, Ca2+, INn2+, 0o 2+ , Zn2+), to biogenic amines (cadaverine, putrescine, spermidine, spermine), to L-arginine, to proteins (lysozyme, bovine serum albumin, Arg-rich histone f3, Lysrich histone), and to poly(dT). Most cations effect destacking of the intramolecular adenine rings. Poly(dT) bound to the dinucleotide with a stoichiometry of 2 residues TFiP per molecule of adenosine 5',5'''-PI,P4-tetraphosphate. INTRODUCTION: nucleoside

Evidence

is accumulating

oligophosphates

tetraphosphate

such as diadenosine

(AppppA ~) are ubiquitous

(4,2). AppppA accumulates boundary

that certain bis-

in living organisms

in proliferating

cells at the G~/S

in the cell cycle (3), or in organisms

stress (2). In its role as a pleiotypic involved in a variety of biological grounds,

5',5'''-PI,P 4-

exposed to

effector,

processes

AppppA is

(~). On chemical

it may be predicted that this class of compounds may

reversibly bind ligands by virtue of both the highly charged oligophosphate

chain and the purine bases. Binding could be

controlled by the mode of intramolecular

stacking of the pu-

rine rings (4). We report here such interactions a variety of metal ions, with biogenic with proteins, Abbreviations

and with poly(dT). used:

AppppA,

of AppppA with

amines, with L-arginine,

We have measured th~ effect

diadenosine

5',5'''-P~,P4-tetra-

pho sphat e. 0006-291X/84 $1.50 1037

Copyright © 1984 by Academic Press, Inc. All rights of reproduction in any form reserved.

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of these ligands on the intramolecular stacking of the adenine rings. MATERIALS AND METHODS: Europium(Ill) nitrate was obtained from Merck/Darmstadt, terbium(lll) chloride from Ventron/Karlsruhe, and tris(hydroxymethyl)-aminomethane, EDTA, Arg-rich histone (fraction f3), Lys-rich histone, hen egg white lysozyme, bovine serum albumin, calcium acetate and all other cations (in the chloride form) from Sigma/Munich. Quartz-distilled water was used throughout the work. Reaction solutions contained 10 mM Tris-HCl buffer pH 7.5. In the absence of metal ions, solutions contained I mM EDTA. Proteins were dialysed twice against buffer containing 10 mM EDTA. Poly(dT) was obtained from Sigma as sodium salt and was dialysed before use. Laboratory plastic ware was used in order to avoid contamination by metal ions. Circular dichroism was measured at 19 + 0.5 °C using quartz cells of 2.0 or 40.0 cm optical path l~ngth with a Jasco J-5OOA spectropolarimeter equipped with a Jasco DP-5OON data processor. Values of dissociation constants and of stoichiometries were calculated from experimental data as described (4). Spectra were corrected by subtraction of contributions from material other than AppppA. RESULTS DIVALENT METAL IONS:

Alkali earth metal ions, Mg 2+ and Ca 2+,

and the heavy metal ions Co2+, Mn 2+ and Zn 2+, bound to AppppA with similar values of KDISS(app.)

(10 - 40 ~M; Table I), and

with similar decreases in ellipticity at 277 nm. The rare earth metal ions Eu 3+ and Tb 3+ reacted with AppppA to form tight com-

TABLE I Divalent metal ion complexes of AppppA a)

AOZAx/Oo

~oiss(app.)

at 277 nm Mg2+ b) Ca 2+ Mn 2+ Co 2+ Zn2+ b)

0.33 0.53 0.45 0.42 0.57

28 36 11 29 15

a) Conditions were 2 - 20 ~M 10 mM Tris-HC1 pH 7.5, 19 + 0.5 C. Symbols A~M~X AppppA, and Oo refer to magnitude of decre~se in ellipticity at saturating concentration of ligand and to magnitude of ellipticity in the absence of ligand. b) Values refer to 22°C and are taken from (4). 1038

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TABLE 2 Biogenic amine complexes of AppppA

AOZAXI@o

KDISs(app.)

at 277 nm

L-Arginine Cadaverine Putrescine Spermidine Spermine

~M

0.46 0.19 0.21 0.35 0.40

27 O00 I 900 910 120 19

Conditions were those of Table I except that q mM EDTA had been added.

plexes, which precipitated (~E-con~entrations, BIOGENIC AMINES:

shortly after mixing of the reactants

not shown).

L-Arginine and biogenic amines formed com-

plexes with AppppA (Table 2). Increasing positive charges favoured complex formation,

indicating electrostatic attraction

to be the driving force. Spermine and divalent metal ions had comparable affinities for AppppA. PROTEINS:

The results for L-srginine and biogenic amines

suggested the possibility of (unspecific) between AppppA and proteins. for several proteins,

complex formation

This is born out from the results

shown in Figure q and in Table 3. In each

case binding was observed as a decrease in ellipticity at 277 nm. In the case of lysozyme and of bovine serum albumin,

concen-

trations were not sufficiently high as to yield a hyperbolic saturation curve. The observed linear dependence is explained by assuming values of KDISS(app.)

that are above the highest

concentrations used (25 ~M for bovine serum albumin, Mr = 68 000, and 48 ~M for lysozyme, Mr = J4 300). Histones,

on the contrary,

showed very strong binding of AppppA, presumably because of their high basicity.

Their titration curves in Figure J are typi1039

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BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

°~I /'~" °,~ !

//

j

.A.0ri...,s.0.E,.~,. 7/ • /~.s0~.E /~v,.~s~.u.A~0.,. ./

0.2

0.1

k~ /,/11 /'/ 17 / / " n / / II !/J . /

~ o - " " " ~ o......~-""~ININE

/

rng/ml Protein

FIGURE I Titration of AppppA with protein Fixed concentrations of AppppA were 53 ~ for histones, 15 pM for bovine serum albumin and 20 ~M for lysozyme. Conditions were otherwise the same as for Table 2. cal for cases where the (fixed) technique

values

concentration

of AppppA.

did not allow determination

for histones.

The concentrations

are given in Table

3 as upper

nation of stoichiometry and high

of KDISS(app.)

(53 ~N)

The resolution

concentrations

constants

(the fixed reactant)

for KDISS(app.).

respectively

below

of the p r e s e n

of dissociation

of AppppA

limits

values

are considerably

Determi-

at low (d - ~O ~M)

of AppppA according

to (4) re-

TABLE 3 Protein complexes of AppppA Stoichiometry mol AppppA : mol ligand at ~ AppppA

KDISS(app') ~M

Arg-rich histone (H3) a)

I at 10 ~ # at 53 ~M

10 53

Lys-rich histone (HI) b)

I at I ~M 3 at 53 ~

I 53

Bovine serum albumin

n . d . c)

25

Lysozyme

n.d.

48

Conditions were those of Table 2. a) Arg-rich histone consisted of H3, ) Lys-rich histonecof HI. Molecular weights were 15 300 and 21 000, respectively. ) n. d. = not determined. Parameters were estimated, in part, from titration curves in Figure I. 1040

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ARfiININE EADAVERINE PUTRESCI NE (-)..- ~(+) SPERMIDINE SPERMI NE LYS-rkh HISTONE(HI) [ARfi-richHISTONE(H3)] Ca2÷ [Mg2+] [C°2÷] a ~

LYSOZYME BOVINE SERUMALBUMIN (-) ~- O-~('+)

a( b

27Ohm

B

A

300nm

FIGURE 2

Representative circular dichroic spectra of free AppppA (trace a) and of AppppA in the presence of subsaturating amounts of ligands (trace b) Experimental conditions were the same as for Table ~ and Table 2, respectively. Traces (a) were corrected for contribution from buffer, traces (b) for contributions from added ligands. Ellipticities in the case of Mg + and Co 2+, respectively, did not decrease in a completely symmetrical fashion (not shown).

vealed

a single tightly bound AppppA,

with lower affinity per molecule Circular

dichroic

stacking

of the adenine

symmetrical Figure

rings

in AppppA

in ellipticities

2B as a consequence

as a (partial)

ration.

and bovine

ceivable

cities

of the metal POLY(dT): a small

opening

in the wavelength

with various

of the stacked

in these properties

This probably

ions with the adenine

Association

increase

of AppppA

in ellipticity

1041

of

in ellipti-

ligation

(4).

and poly(dT) (Fig.

It is con-

was also seen for

reflected

ring(s)

configu-

as a result

decrease

decrease

ligands

display

range of interest.

2A. An asymmetrical

Mn 2+ and Zn 2+ (not shown).

to intramolecular

at 277 nm and 254 nm in

is seen as the asymmetrical

of Figure

(Table 3).

serum albumin themselves

that a perturbation

AppppA binding

others bound

(5). Hence the observed

of interaction

can be explained

strong dichroism

of histone

spectra have been attributed

decrease

Lysozyme

and several

was monitored

3A). As in the case of

as

Vol. 120, No. 3, 1984

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

( - ) ~ 0-'.'{+)

B ~61

,

/ ~1 I~MPOL¥Idrl

4~

,

|

o

=__~

E t o a ~ o ' ~ i °°° ~2 111aMAppppA oI.~~

~

i

2'0

pM AppppA

FIGURE 3 Titration of poly(dT) with AppppA Panel A: Representative circular dichroic spectra for free AppppA (Ref.) and for 30 ~M AppppA plus 31 ~M poly(dT). Panel B: Increase in ellipticity at 277 nm as a functibn of concentration of AppppA.

histones,

the titration curve was not hyperbolic and reflected

KDISS(app.) ~ 3 J

~N (= the concentration of poly(dT)

of TFLP residues,

as the fixed reactant).

in terms

The stoichiometry was

calculated from the position of the bend of the curve (Fig. 3B) to be 2 residues TNP per molecule AppppA.

The small effect on

circular dichroism seemed to exclude the occurrence of larger changes in conformations of poly(dT)

and AppppA.

DISCUSSION The proposed role of AppppA as a pleiotypic

effector is stressed

by the present findings that the dinucleotide can bind to various different

ligands. Enzymatic reactions with AppppA that require

its open conformation, may require prior binding to such ligands. The diversity of ligands that are able to bind AppppA will have to be taken into account when intracellular concentrations of AppppA are calculated.

Tight binding of AppppA to histones may

be of importance during nucleosome assembly. ciation with poly(dT)

The observed asso-

lends support for the proposed role of

AppppA as primer of DNA synthesis in vivo (6). Experiments are in progress to establish dissociation constants, significance of reactions described here.

1042

specificity and

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REFERENCES I 2 3 4 5 6

Zamecnik, P. (1983) Anal. Bioehem. I_3_#, 1-10. Lee, P.C., Bochner, B. and Ames, B. (1983) Proc. Natl. Acad. Sci. USA 80, 7496-7500. Weinmann-Dorsch, C., Hedl, A., Grummt, I., Albert, W., Ferdinand, F.-J., Friis, R.R., Pierron, G., Moll, W. and Grummt, F. (1984) Eur. J. Biochem. 138, 479-185. Holler, E., Holmquist, B., Vallee, B.L., Taneja, K. and Zamecnik, P. (1983) Biochemistry 22, 4924-4933. Scott, J.F. and Zamecnik, P. (1969-7 Proc. Natl. Aoad. Sci. USA 64, 1308-1314. Zamecnik, P., Rapaport, E. and Baril, E.F. (1982) Proc. Natl. Acad. Sci. USA 79, 1791-1794.

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