Nuclear mechanotransduction: sensing the force from within

Nuclear mechanotransduction: sensing the force from within

Available online at www.sciencedirect.com ScienceDirect Nuclear mechanotransduction: sensing the force from within Avathamsa Athirasala1, Nivi Hirsch...

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ScienceDirect Nuclear mechanotransduction: sensing the force from within Avathamsa Athirasala1, Nivi Hirsch2 and Amnon Buxboim1,2 The cell nucleus is a hallmark of eukaryotic evolution, where gene expression is regulated and the genome is replicated and repaired. Yet, in addition to complex molecular processes, the nucleus has also evolved to serve physical tasks that utilize its optical and mechanical properties. Nuclear mechanotransduction of externally applied forces and extracellular stiffness is facilitated by the physical connectivity of the extracellular environment, the cytoskeleton and the nucleoskeletal matrix of lamins and chromatin. Nuclear mechanosensor elements convert applied tension into biochemical cues that activate downstream signal transduction pathways. Mechanoregulatory networks stabilize a contractile cell state with feedback to matrix, cell adhesions and cytoskeletal elements. Recent advances have thus provided mechanistic insights into how forces are sensed from within, that is, in the nucleus where cell-fate decision-making is performed. Addresses 1 Alexander Grass Center for Bioengineering, School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel 2 Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel Corresponding author: Buxboim, Amnon ([email protected])

Current Opinion in Cell Biology 2017, 46:119–127 This review comes from a themed issue on Cell nucleus Edited by Roland Foisner and Aaron F Straight

http://dx.doi.org/10.1016/j.ceb.2017.04.004

embryo development [8,9]. Recent advancements have provided mechanistic insights of how mechanical forces are converted into biochemical cues inside the cell nucleus and how the emerging signals propagate via conserved pathways to regulate gene expression and define a contractile cell state. Here we review the recent advancements in our understanding of the structural, physical and molecular properties that facilitate nuclear mechanotransduction and discuss design principles of how cells sense forces from within.

Structural organization of nuclear lamina Resolving the structural organization of the nuclear lamina (NL) has been a long-standing experimental challenge [10,11]. The nuclear envelope (NE) is a highly crowded environment that is occupied by cytoplasmic intermediate filaments (IFs) and other perinuclear cytoskeletal arrangements on the cytoplasmic side, and dense formations of heterochromatin, DNA, nuclear lamins and lamin-binding proteins on the nucleoplasmic side [12,13]. Protein specificity obtained by high-resolution fluorescence microscopy displayed juxtaposed networks comprising either A- or B-type lamins in mammalian nuclei that cross-interact and are involved in chromatin maintenance and transcription regulation [14,15]. The remarkable recent advancements in cryo-electron tomography (cryo-TM) techniques have provided unparalleled resolution of the nucleus [16]. Nuclear lamins detected in Hela cells and in mouse embryonic fibroblasts (MEFs) were found to form thinner than expected filaments, 3.5–4 nm, with a persistence length > 500 nm [17,18]. In fact, lamins assemble into the thinnest cyto/nucleoskeletal filaments identified to date, even thinner than the actin ‘microfilament’.

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Introduction Mechanosensing of externally applied forces and of extracellular stiffness is a fundamental property of solid tissue adhering cells [1,2]. It provides adhesive cells with a means to locomote towards stiff scar-like regions [3], modulate cancer cell malignancy [4], direct differentiation of adult stem and progenitor cells towards soft or stiff tissue lineages [5], regulate the exit from pluripotency of embryonic stem cells [6,7], and direct the very first differentiation process in mammalian preimplantation www.sciencedirect.com

The identity of lamin filaments was confirmed and a detailed description of their molecular scale organization was achieved using cryo-TM imaging of vimentin-null MEFs [18]. A- and B-type lamins were laterally decorated by an even longitudinal distribution of Ig-domains. In vitro assembly of A- and B-type paracrystals confirmed that lamin dimers polymerize head-to-tail via short overlapping tetrameric edge regions of 6 nm. Two halfstaggered lamin polymers assemble laterally to form a rod with alternating tetrameric-hexameric regions and 20 nm separation between two adjacent globular domain pairs. The spatial resolution (20 A˚) is insufficient to determine the polarity of the tetrameric protofilaments. Lamin assembly in Caenorhabditis elegans supports the formation of apolar filaments [19], yet the structural Current Opinion in Cell Biology 2017, 46:119–127

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analysis of mammalian lamin filaments is in agreement with both parallel and antiparallel lateral assembly. A non-uniform coverage of the inner nuclear membrane (INM) consists of dense lamin network regions separated by sparse areas. On average, only half of the total area of the NL appears to be occupied by lamins, which are constrained within a thin layer of 14 nm underneath the INM [18]. Based on these results, the NL appears to form a thin and sparse filamentous sheet that reflects the contribution of the interactions with chromosomes to nuclear mechanics over its own stiffness (discussed below).

Direct transmission of forces to the nucleus Lacking a direct attachment between the cell nucleus and the extracellular environment, the transmission of forces into the nucleus and the activation of nuclear mechanosensory elements is mediated via the Linker of a Nucleoskeleton and Cytoskeleton (LINC) complex [20,21]. The c-termini of the trimeric SUN1 and SUN2 INM proteins and the outer nuclear membrane (ONM) Nesprin proteins extend into the perinuclear lumen and bind via the SUN-KASH domain association to form a physical bridge between the nucleoskeleton and the cytoskeleton. These nuclear attachments are specific to the main cytoskeletal networks of the cell. Nesprin-1 and 2 bind F-actin via the N-terminal Calponin Homology domain, Nesprin-3 binds intermediate filaments (IFs) via plectin, and the shortest isoform Nesprin-4 binds kif5b, a subunit of the microtubule motor protein kinesin-1 [22]. Analogous to cell–matrix and cell–cell adhesions, the LINC complex can thus be regarded as a nuclear adhesion element that enables the rapid propagation of tensile forces from matrix to nucleus and back along the cytoskeleton [23]. The deformation of the nucleus due to applied physical stresses is discussed below. Nucleus deformability dictates mechanosensitive response to fast and slow physical inputs Cells experience a broad range of forces that change in magnitude and in time. The mechanical response of the nucleus is important for elucidating mechanisms of how mechanotransduction signaling is mediated. The nucleus lacks a stable three-dimensional fibrous network that transverses the nucleoplasm and confers shape and mechanical integrity, akin to the cytoskeleton [24–26]. The two main mechanical elements are the NL and the tightly packed interphase chromosomes. Nucleus deformability varies greatly between cell types and it decreases during embryonic stem cell differentiation [27,28]. Yet, the interphase nucleus of solid tissue cells is generally stiffer and more viscous than the cytoplasm [29,30]. As a result, nucleus deformability becomes the main obstacle to cell migration across physically constrained spaces and is modulated by A-type lamins that confer physical protection of the genome [31–34]. Current Opinion in Cell Biology 2017, 46:119–127

Excessive shear stresses exerted during the migration of cancer and immune cells across narrow constrictions can lead to NE rupture, DNA breaks, chromosome mislocalization and recruitment of the molecular repair machinery [35,36,37]. Depletion of lamin levels increased the likelihood of NE rupture, thus increasing genome instability and chromosomal aberrations. Similarly, nuclear tension can stimulate the recruitment of lipid processing enzymes into the stretched nuclear membrane to activate a proinflammatory lipid signaling [38]. Nucleus rheology is complex owing to its heterogeneous structural organization [39] and the broad range of strong and transient interactions with chromatin [40]. Despite this complexity, the global mechanical response to constant micropipette aspiration was well modeled using a simple arrangement of two springs and one dashpot (the SLS model), accounting for a single dissipative relaxation mode [30]. This viscoelastic behavior shifted towards an elastic load-bearing system in swollen nuclei where chromatin attachments are disrupted [41,42]. Three-dimensional chromatin cross-interactions were consistent with a power-low rheology, accounting for a broad range of timescales and relaxation modes that cannot be modeled using simple spring-dashpot circuits [27]. Viscosity is conferred mostly by lamin-A/C, whereas the B-type lamina generates an elastic resistance to stretching [33,43]. Viscosity is consistent with the presence of a 5–10% nucleoplasmic fraction of mature lamin-A/C in interphase cells compared with undetectable nucleoplasmic levels of the farnesylated B-type lamins [44]. The exact multimeric nature of nucleoplasmic lamin-A/C is not clear but has been implicated in generating transient interactions with chromatin with no detectable sequence dependence [45,46]. Lamins also form stable attachments with long genomic regions termed laminaassociated domains (LADs). LADs make up 35% of the genome and are generally associated with a transcriptionally repressive environment [47]. Constitutive LADs (cLADs) are conserved across species in terms of genomic location and size but not sequence. Long A/T-rich segments seem to serve as docking signals to the lamina, [48] indicative of a functional genome organization. Likewise, nucleolus-associated domains (NADs) form nucleoplasmic chromosomal crosslinks [49].

Conversion of mechanical forces into biochemical signals Unlike molecular recognition motifs, which have evolved to specifically target protein domains, chromatin modifications and nucleic acid sequences, mechanical forces act on all interconnected components as they propagate along the cytoskeleton and into the nucleus. Yet, only specific structural elements can convert forces into biochemical signals that are anchored into force-bearing hotspots and are prone to undergo forced unfolding and exposure of functional cryptic sites or shielding of others. In this www.sciencedirect.com

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manner, mechanically induced conformational changes can promote or hinder molecular interactions with signaling molecules by increasing or decreasing their allosteric accessibility. This mechanobiochemical regulation is based on modulating existing molecular interactions, thus rendering molecular specificity while triggering or blocking downstream signaling pathways. Exposure of cryptic molecular recognition sites by forced unfolding appears to be a unifying principle that applies to extracellular filaments, cell–matrix and cell–cell adhesions, and cytoskeletal proteins (Figure 1). Stretching of fibronectin facilitates an extracellular fibril assembly [50– 52]. Stretching of integrins modulate ligand binding [53,54], extension of p130Cas increases the rate of phosphorylation by Src kinase [55], and extension of talin facilitates the recruitment and binding of vinculin [56] necessary for mechanically-induced focal adhesion growth and activation of downstream Rho-ROCK signaling and other pathways [57–59]. Similarly, strain-induced proliferation of epithelial monolayers is mediated by activation and nuclear translocation of E-cadherinsequestered Yap1 and b-catenin [60]. Forced unfolding of the cytoskeletal components spectrin, vimentin and myosin-IIA was shown to regulate their structural organization, polymerization and assembly [61]. Similar to cell-matrix adhesions, LINC complex assemblies form dynamic nuclear attachments that undergo structural remodeling and local stiffening in response to applied force [62]. Local stiffening of isolated nuclei was observed only when pulling forces were mediated

through the LINC complex using magnetic beads coated with anti-nesprin-1 antibodies. Stiffening required laminA/C and was associated with Tyr74 and Tyr95 phosphorylation of the INM protein emerin. Local stiffening is thus attributed to tension-dependent reinforcement of cytoskeletal-nucleoskeletal interactions, which facilitates an efficient transmission of tensile forces inside-out and outside-in [23]. The forces that are applied to the NL unfold the Ig-domain of lamin-A/C, as was demonstrated using isolated nuclei exposed to controlled shear, thus protecting the nucleus from rupture [43]. Moreover, nuclear tensile forces suppress lamin-A/C phosphorylation, including the so-called mitotic site Serine-22 that triggers disassembly [44]. Tension-dependent suppression of lamin-A/C phosphorylation is consistent with a mechanically induced intermolecular steric shielding that hinders kinase accessibility (Figure 1). Consistently, cell relaxation induced by matrix softness, adhesion detachment or pharmaceutical inhibitors or myosin contractility independently show a significant increase in lamin-A/C phosphorylation in interphase cells [44]. As a result, the nucleoplasmic fraction of lamin-A/C is enriched and facilitates easier degradation and faster turnover rates. Force-dependent phosphorylation constitutes a nuclear mechanotransduction mechanism, which provides the cell a means for regulating its NL and activating pathways downstream of nucleoplasmic lamin-A/C [43,44]. In addition to lamin-A/C, tensile forces were associated with conferring protection from proteolytic degradation of extracellular collagen fibrils [63–65], whereas cell relaxation enhances disassembly of the cytoskeletal

Figure 1

Low tension

High tension

Protein forced unfolding

Tension-dependent filament stabilization Chromatin stretching Current Opinion in Cell Biology

The conversion of mechanical forces into biochemical cues can be performed by specific mechanisms. Forced unfolding of linker and adapter proteins exposes cryptic sites that become available for binding and activating interacting factors (top). Tension that is applied to rope-like supercoiled filaments hinders the accessibility of signaling molecules, thus conferring protection from induce disassembly, protein turnover and proteolytic degradation (middle). The propagation of forces across the LINC complex attachments and transmission into the nucleus can directly pull on chromatin segments, thus increasing their binding affinity to RNA-polymerase and the transcriptional machinery (bottom).

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intermediate filament vimentin [61] and non-muscle myosin-IIA minifilament [44,66]. Collectively, exerted forces are associated with ECM stabilization and stiffening that were shown to promote cell-generated traction forces [67–69]. Cytoskeletal strain will further increase due to lamin-A/C stabilization and nuclear stiffening, thus forming a stress concentrator [70]. Cytoskeletal assembly and internal prestress were shown to adapt to matrix elasticity [71], in accordance with lamin-A/C expression levels that matched tissue microelasticity [43]. This constitutes a mechanobiochemical feedback, which maintains a contractile cell state, typical of muscle, cartilage or bone and other tissues under mechanical load (Figure 2).

Molecular mediators of cellular mechanotransduction The conversion of mechanical inputs into biochemical signals is performed by mechanisms such as forced unfolding of adaptor and linker proteins, and tensiondependent stabilization of protein filaments (Figure 1). Mechanoregulation of cellular functions requires a means for propagating these mechano-converted signals via the available repertoire of signaling pathways (Figure 3). Several molecular mediators were discovered recently, which share a common principle: their cytoplasmic-tonuclear translocation is stimulated by mechanical inputs. MKL1 is a transcription coactivator of the serum response factor (SRF) transcription factor, which is sequestered by cytoplasmic G-actin. Serum supplementation [72], applied mechanical stress and other physical inputs that induce a contractile cell state [73–75] facilitate nuclear accumulation of MKL1, concomitantly with the

polymerization of G-actin into polymerized F-actin. In the nucleus, export of MKL1 is modulated by nuclear actin [76], where lamin-A/C and emerin, which is an actincapping protein, promote nuclear actin polymerization to retain nucleoplasmic localization and activation of SRFtarget genes [77]. Interestingly, applied strain can also drive the translocation of INM emerin to the ONM, where it promotes the formation of perinuclear actomyosin filaments, the depletion of nuclear G-actin and heterochromatin remodeling [78]. SRF is a master regulator of structural and motor proteins of the actomyosin cytoskeleton and the contractile machinery of the cell [76,79,80]. Indeed, a combined transcriptomic-proteomic profiling in MSCs confirmed the impact of lamin-A/C knockdown on MKL1-SRF target genes [44]. Yap/Taz are mechanically-activated transcriptional co-factors of the Hippo pathway, which is implicated with cell–cell contact inhibition, regulation of organ size and cancer progression [81]. Just like MKL1, Yap/Taz translocates to the nucleus in response to matrix stiffness, cell spreading and applied stretching [82,83]. Its nuclear localization and activation are mechanically regulated via the non-canonical Hippo pathway independent of MST-LAST activation. No direct lamin involvement was reported to date, yet capping and severing factors of the actin cytoskeleton were shown to inhibit Yap/Taz mechanotransduction signaling only in mechanically-relaxed cells [83]. In the nucleus, Yap/Taz activate the TEAD family of transcription factors that target proliferative and apoptosis-inhibitor genes. Other mechanoregulated nuclear mediators were identified recently. SHP2 interacts with and acts downstream of Yap/Taz and enhances Wnt signaling [84]. The

Figure 2

LINC stabilization Small G-proteins signaling

Matrix stablization & stiffness

Matrix adhesion growth

Ctyskeletal assembly & contractility Nuclear lamina stabilization & stiffness SRF signaling

Retinoic acid signaling

Current Opinion in Cell Biology

A mechanobiochemical feedback between matrix, cytoskeleton and nucleus maintains a contractile cell state. The stabilization and growth of cellmatrix and cell-nucleus attachments facilitate an efficient propagation of forces inside out and outside in. These forces, together with the indicated signaling pathways stabilize and promote the assembly of matrix, actomyosin and nuclear lamin filaments and increase cell contractility. Cytoskeletal contractile forces induce matrix and nucleus deformations that in turn generate elastic restoring forces. Solid and dashed arrows represent molecular signaling and mechanical stresses, respectively.

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Nuclear mechanotransduction: sensing the force from within Athirasala, Hirsch and Buxboim 123

Figure 3

Cytoplasm

Y T

Tension

MKL1

n io s n Te

Nkx2.5 RG

Y T TEAD

Nucleoplasm Lamin-A/C Lamin-B1/B2 Nesprin SUN Nuclear pore Cytoskeleton

Nkx2.5

MKL1

SRF

RG RX

E Y T

Emerin Phosphate Tap/Taz

RG RX RARG-RXR

Degradation

Retinoic acid Current Opinion in Cell Biology

Transcriptional regulators translocate to and from the nucleus in accordance with the contractile state of the cell. Tensile forces that are exerted by the cytoskeleton strengthen the LINC complex and stabilize the nuclear lamina by suppressing lamin-A/C phosphorylation, disassembly and degradation. Blue and orange arrows and transcribed genes correspond to relaxed and contractile cell states, respectively.

retinoic acid receptor gamma (RARG) upregulates the transcription of the lamin-A/C gene whereas lamin-A/C protein contributes to the nuclear localization and activation of RARG, optionally via SUN2 [43]. Lastly, matrix softness rather than stiffness stimulates the nuclear localization of Nkx2.5 where it suppresses genes associated with the contractile cell state such as smooth

muscle actin in MSC [85]. Collectively, cell mechanotransduction is mediated via molecular relays that regulate gene programs and tune the contractile state of the cell (Figure 3). LAP2a is another transcriptional and epigenetic regulator that interacts with nucleoplasmic lamin-A/C, yet with currently unknown mechanobiological roles (see Box 1).

Box 1 Lamin-associated polypeptide-2a (Lap2a) gene regulation downstream of lamin-A/C LAP2 isoforms, whose role in chromatin organization and transcription regulation is established, were not directly implicated to date with mechanotransduction signaling. Nevertheless, LAP2a interact with nucleoplasmic lamin-A/C to regulate E2F/pRb signaling [90,91] and the Hippo pathway transcription factor TEAD4 was identified as one of its targets [92]. LAP2-chromatin interactions are mediated either by the Barrier to Autointegration Factor (BAF) via the LAP2–emerin–MAN1 (LEM) domain or directly through the LEM-like domain (both are N-terminal domains) [93]. The association with BAF facilitates peripheral heterochromatin anchorage to the NE in interphase cells [94]. However, LAP2a differs from the other alternatively spliced isoforms in that it lacks a membrane-binding domain. Instead, LAP2a encodes a unique C-terminal tail that binds exclusively to A-type lamins [95] and promotes nucleoplasmic localization of lamin-A/C [91]. Nucleoplasmic complexes of lamin-A/C and Lap2a bind the retinoblastoma protein (pRb) and stabilize it in the nucleus [90]. In its active or hypo-phosphorylated form, pRb negatively regulates cell cycle progression by binding to the E2F transcription factor and cyclin-D3, causing cell-cycle arrest in the G1-phase [96,97]. Chromatin immunoprecipitation (ChIP) profiles indicate that lamin-A/C and LAP2a associate with overlapping euchromatic regions and loss of LAP2a drives relocalization of lamin-A/C from euchromatin towards heterochromatin regions [98]. These chromatin associations suggest that LAP2a-lamin-A/C interactions play a role in maintaining open euchromatin configurations. Nucleoplasmic lamin-A/C was reported to also retain Polycomb-mediated gene silencing [78,99]. Conceivably, loss of or mutations in either LAP2a or lamin-A/C are associated with increased cell cycling, hyperproliferation [100–102] and premature aging-related disease phenotypes such as Hutchinson Gilford Progeria Syndrome (HGPS) [103–105]. A mechanobiological involvement of LAP2a—lamin-A/C interactions in regulating cell cycle of progenitor and stem cell functions is yet to be evaluated, yet based on these observations it is tempting to speculate that a mechanoresponsive gain or loss of nucleoplasmic lamins and/or structural remodeling of the NL could affect gene expression via LAP2a-related pathways.

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response, and dormancy in hepatocellular carcinoma cells. Hepatology 2011, 53:1192-1205.

Force-dependent genome reorganization modulates transcription The genome of interphase nucleus is organized into discrete chromosome territories [86] and substructures termed topologically associated domains [87]. Lineage specific genome organization is associated with transcription regulation.[88] This motivates the hypothesis that mechanical forces, which physically deform the nucleus, can regulate gene expression independent of molecular relays by directly stretching chromosomal sections and/or opening condensed configurations (Figure 1). If so, mechanobiological functions will require mechanisms to target specific genes in a cell-type dependent manner. Tajik et al. exerted periodic shear stress to the apical surface of CHO cells using magnetic beads and measured the extent of chromatin stretching and the rate of transcription of an integrated transgene [89]. Indeed, transcription rate correlated with stress-induced chromatin stretching and both depended on the magnitude of applied shear stress and angle. Stress-induced chromatin stretching and transcription was disrupted when nuclear lamins, emerin, LINC complex proteins, heterochromatin protein-1 (HP1) and BAF were knocked down but not lamin-B receptor (LBR). Moreover, stress-induced chromatin stretching and transcription was amplified in contractile cells and was suppressed in relaxed cells. The effects of applied stress did not depend on the activation of cell-matrix adhesion signaling because comparable induced transcription rates were measured for beads coated with RGD peptide and nonspecifically with PLL that induced similar chromatin stretching. Hence, mechanotransdcution is facilitated here by force propagation along the actomyosin cytoskeleton, LINC attachments, nuclear lamins and heterochromatin linkers to induce chromatin stretching and increase the accessibility of the transcriptional machinery [89].

Acknowledgements This work was supported by the Israel Science Foundation (1246/14) and the Niedersachsen Vorab fund (A115548).

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