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Subject index Volume 251
FEMS Microbiology Letters 251 (2005) 363–370 www.fems-microbiology.org
FEMS Microbiology Letters
Subject Index Volume 251 ACC deaminase Plant growth-promoting bacteria; Ethylene (Glick B.R. (251) 1) Active site YkuK; DUF458 family; RNase H-like fold; Structure/function prediction; Nuclease (Kni_zewski, Ł. (251) 341) Aflatoxin Mycoferritin; Aspergillus parasiticus; Oxidative stress; Toxigenic potential (Shashidhar, J. (251) 113)
ArcA/ArcB uvrA; ssb; Two-component system; Escherichia coli (Ogasawara, H. (251) 243) Aromatic acids Pseudomonas putida; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Aspergillus Omni-potent suppressor; eRF1; snpA; npgA (Han, K.-H. (251) 155)
Alcaligenes faecalis Chlorpyrifos degrading bacterium; 3,5,6-Trichloro-2-pyridinol degrading; Rhizosphere (Yang, L. (251) 67)
Aspergillus fumigatus Ergot alkaloids; Clavines; Mycotoxin; Neotyphodium; Claviceps (Panaccione D.G. (251) 9)
Alexandrium Toxic dinoflagellate; Paralytic shellfish poisoning; Encystment; Differential display; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161)
Aspergillus nidulans Apoptosis; Autolysis; fluG; brlA (Emri, T. (251) 297)
Aminobacter Methyl chloride; Methyl bromide (Warner, K.L. (251) 45) Anabaena variabilis M3 Cyanobacterial rbp; Low temperature; 5¢-UTR; RNA stability; Downstream box (Ehira, S. (251) 91)
Aspergillus parasiticus Mycoferritin; Aflatoxin; (Shashidhar, J. (251) 113)
Oxidative
stress;
Toxigenic
potential
Autolysis Aspergillus nidulans; Apoptosis; fluG; brlA (Emri, T. (251) 297) B. cepacia complex Burkholderia; Bacteriophages; Phage (Seed, K.D. (251) 273)
Antibacterial activity Phospholipid fatty acid; Growth conditions; Pseudomonas fluorescens; Stress (Fouchard, S. (251) 211)
Bacteriophage /X174 Minor spike H protein; Lipopolysaccharide; Host-recognition; Conformational change; Phage infection (Inagaki, M. (251) 305)
Antimicrobial Marine; Lignicolous fungi; Diaporthe sp.; Metabolites; Cytotoxic (Lin, X. (251) 53)
Bacteriophages Burkholderia; B. cepacia complex; Phage (Seed, K.D. (251) 273)
Antitubercular drugs Clotrimazole; Econazole; Mycobacteria (Ahmad, Z. (251) 19) Apoptosis Aspergillus nidulans; Autolysis; fluG; brlA (Emri, T. (251) 297) Arbuscular mycorrhizal fungi Genetic makeup; Glomeromycota; Homokaryosis; Population structure; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185)
doi:10.1016/S0378-1097(05)00632-4
Bidirectional hydrogenase Synechocystis; hox; Transcription regulator; LexA (Oliveira, P. (251) 59) Biodiversity Moroccan soft white cheese; Identification; Lactic acid bacteria; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Biofilms Streptococcus mutans; Competence stimulating peptide; Programmed cell death; Mutans (Qi, F. (251) 321)
364
Subject Index Volume 251 Chlorpyrifos degrading bacterium 3,5,6-Trichloro-2-pyridinol degrading; faecalis (Yang, L. (251) 67)
Biogeography Hypocrea; ITS1 and 2; tef1; Phylogeny (Zhang, C.-l. (251) 251) Biological control Trichoderma hamatum; Mycoparasitism; Subtractive hybridisation; SSH (Carpenter, M.A. (251) 105) brlA Aspergillus nidulans; Apoptosis; Autolysis; fluG (Emri, T. (251) 297) Burkholderia B. cepacia complex; Bacteriophages; Phage (Seed, K.D. (251) 273) Cadherin superfamily Calcium-binding proteins; Carbohydrate binding proteins (Cao, L. (251) 203)
Rhizosphere;
Alcaligenes
Cinnamic acid Pseudomonas putida; Aromatic acids; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Claviceps Ergot alkaloids; Clavines; Mycotoxin; Neotyphodium; Aspergillus fumigatus (Panaccione D.G. (251) 9) Clavines Ergot alkaloids; Mycotoxin; Neotyphodium; Claviceps; Aspergillus fumigatus (Panaccione D.G. (251) 9)
Cadmium resistance Resistance-nodulation-cell division family; Caulobacter (Braz, V.S. (251) 289)
Clotrimazole Econazole; Antitubercular drugs; Mycobacteria (Ahmad, Z. (251) 19)
Calcium Saccharomyces cerevisiae; PMR1; hSPCA1; Magnesium; Hailey– Hailey disease (Szigeti, R. (251) 333)
CN ratio Metarhizium; Nutrition; Virulence; Markers; Pr1; Starvation (Shah, F.A. (251) 259)
Calcium-binding proteins Cadherin superfamily; Carbohydrate binding proteins (Cao, L. (251) 203)
Competence stimulating peptide Streptococcus mutans; Programmed cell death; Mutans; Biofilms (Qi, F. (251) 321)
Candida albicans Candida dubliniensis; Statistical classification strategy; NMR spectroscopy; Chemotype; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327)
Conformational change Bacteriophage /X174; Minor spike H protein; Lipopolysaccharide; Host-recognition; Phage infection (Inagaki, M. (251) 305)
Candida dubliniensis Candida albicans; Statistical classification strategy; NMR spectroscopy; Chemotype; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327) Carbohydrate binding proteins Calcium-binding proteins; Cadherin superfamily (Cao, L. (251) 203) Caulobacter S-layer; Transcription; Type I secretion (Toporowski, M.C. (251) 29) Caulobacter Cadmium resistance; Resistance-nodulation-cell division family (Braz, V.S. (251) 289) cdtB Helicobacter hepaticus; Cytolethal distending toxin; Toxin; Nuclease (Dassanayake, R.P. (251) 219) Cell division Cyanobacteria; DNA replication; FtsZ; Microcystis (Yoshida, T. (251) 149) Cell lines Metarhizium anisopliae; Destruxins; Fungal assessment; Toxicity (Skrobek, A. (251) 23)
metabolites;
Risk
Chemotype Candida dubliniensis; Candida albicans; Statistical classification strategy; NMR spectroscopy; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327)
Cyanobacteria Cell division; DNA replication; FtsZ; Microcystis (Yoshida, T. (251) 149) Cyanobacterial rbp Low temperature; Anabaena variabilis M3; 5¢-UTR; RNA stability; Downstream box (Ehira, S. (251) 91) Cytochrome P450 monooxygenase Fungal complete genome; Fusarium graminearum species complex; Mycotoxin; Targeted gene disruption; Trichothecene biosynthetic gene (Tokai, T. (251) 193) Cytolethal distending toxin Helicobacter hepaticus; cdtB; Toxin; Nuclease (Dassanayake, R.P. (251) 219) Cytotoxic Marine; Lignicolous fungi; Diaporthe sp.; Metabolites; Antimicrobial (Lin, X. (251) 53) DD-carboxypeptidase
Listeria monocytogenes EGD; Penicillin-binding proteins; PBP5; Murein (Korsak, D. (251) 281) Degenerate PCR primer Polyketide; Type I polyketide synthase; PKS; Xylaria; Fungi (Amnuaykanjanasin, A. (251) 125) Destruxins Metarhizium anisopliae; Fungal metabolites; Toxicity; Cell lines (Skrobek, A. (251) 23)
Risk
assessment;
Subject Index Volume 251
365
Diaporthe sp. Marine; Lignicolous fungi; Metabolites; Cytotoxic; Antimicrobial (Lin, X. (251) 53)
FtsZ Cyanobacteria; Cell division; DNA replication; Microcystis (Yoshida, T. (251) 149)
Differential display Toxic dinoflagellate; Alexandrium; Paralytic shellfish poisoning; Encystment; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161)
Fungal complete genome Cytochrome P450 monooxygenase; Fusarium graminearum species complex; Mycotoxin; Targeted gene disruption; Trichothecene biosynthetic gene (Tokai, T. (251) 193)
DNA replication Cyanobacteria; Cell division; FtsZ; Microcystis (Yoshida, T. (251) 149) Downstream box Cyanobacterial rbp; Low temperature; Anabaena variabilis M3; 5¢UTR; RNA stability (Ehira, S. (251) 91) DUF458 family YkuK; RNase H-like fold; Structure/function prediction; Active site; Nuclease (Kni_zewski, Ł. (251) 341) Econazole Clotrimazole; Antitubercular drugs; Mycobacteria (Ahmad, Z. (251) 19) Encystment Toxic dinoflagellate; Alexandrium; Paralytic shellfish poisoning; Differential display; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161) Enzyme assays Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) eRF1 Omni-potent suppressor; snpA; npgA; Aspergillus (Han, K.-H. (251) 155) Ergot alkaloids Clavines; Mycotoxin; Neotyphodium; Claviceps; Aspergillus fumigatus (Panaccione D.G. (251) 9) Escherichia coli HtrA; Hha; H-NS; Osmoregulation (Forns, N. (251) 75) uvrA; ssb; ArcA/ArcB; Two-component system (Ogasawara, H. (251) 243) Ethylene Plant growth-promoting bacteria; ACC deaminase (Glick B.R. (251) 1) Exoenzymes Trehalose; Fungi; a,a-Trehalase; Rhizopus microsporus; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169) Exopolysaccharide Grifola frondosa; Human dermal fibroblasts; Matrix metalloproteinase; Skin aging; UVA-irradiation (Bae, J.T. (251) 347)
Fungal metabolites Metarhizium anisopliae; Destruxins; Risk assessment; Toxicity; Cell lines (Skrobek, A. (251) 23) Fungi Polyketide; Type I polyketide synthase; PKS; Xylaria; Degenerate PCR primer (Amnuaykanjanasin, A. (251) 125) Trehalose; Exoenzymes; a,a-Trehalase; Rhizopus microsporus; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169) Fusarium graminearum species complex Cytochrome P450 monooxygenase; Fungal complete genome; Mycotoxin; Targeted gene disruption; Trichothecene biosynthetic gene (Tokai, T. (251) 193) GelCompar II Moroccan soft white cheese; Identification; Lactic acid bacteria; Biodiversity; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting (Ouadghiri, M. (251) 267) Gene cloning and expression Lgk gene; Levoglucosan kinase; LC-ESI-MS/MS; RT-PCR (Xie, H.-j. (251) 313) Genetic diversity Helicobacter pylori; Outer membrane protein (Cao, P. (251) 37) Genetic makeup Arbuscular mycorrhizal fungi; Glomeromycota; Homokaryosis; Population structure; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185) Glomeromycota Arbuscular mycorrhizal fungi; Genetic makeup; Homokaryosis; Population structure; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185) Grifola frondosa Exopolysaccharide; Human dermal fibroblasts; Matrix metalloproteinase; Skin aging; UVA-irradiation (Bae, J.T. (251) 347) Growth conditions Antibacterial activity; Phospholipid fatty fluorescens; Stress (Fouchard, S. (251) 211)
acid;
Pseudomonas
fluG Aspergillus nidulans; Apoptosis; Autolysis; brlA (Emri, T. (251) 297)
(GTG)5-PCR genomic fingerprinting Moroccan soft white cheese; Identification; Lactic acid bacteria; Biodiversity; Protein fingerprinting; GelCompar II (Ouadghiri, M. (251) 267)
Folate Nicotinate; Sulfonamide resistance; Sulfamethoxazole; Sulfathiazole (Kornfeld, O. (251) 137)
Hailey–Hailey disease Saccharomyces cerevisiae; PMR1; hSPCA1; Calcium; Magnesium (Szigeti, R. (251) 333)
366
Subject Index Volume 251
Helicobacter hepaticus Cytolethal distending toxin; cdtB; Toxin; Nuclease (Dassanayake, R.P. (251) 219)
LC-ESI-MS/MS Lgk gene; Levoglucosan kinase; RT-PCR; Gene cloning and expression (Xie, H.-j. (251) 313)
Helicobacter pylori Outer membrane protein; Genetic diversity (Cao, P. (251) 37)
Leaf scald Nonribosomal peptide synthetases; Polyketide synthases; Sugarcane (Vivien, E. (251) 81)
Hha HtrA; H-NS; Osmoregulation; Escherichia coli (Forns, N. (251) 75) H-NS HtrA; Hha; Osmoregulation; Escherichia coli (Forns, N. (251) 75) Homokaryosis Arbuscular mycorrhizal fungi; Genetic makeup; Glomeromycota; Population structure; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185) Host-recognition Bacteriophage /X174; Minor spike H protein; Lipopolysaccharide; Conformational change; Phage infection (Inagaki, M. (251) 305) hox Synechocystis; Bidirectional hydrogenase; Transcription regulator; LexA (Oliveira, P. (251) 59) hSPCA1 Saccharomyces cerevisiae; PMR1; Calcium; Magnesium; Hailey– Hailey disease (Szigeti, R. (251) 333) HtrA Hha; H-NS; Osmoregulation; Escherichia coli (Forns, N. (251) 75)
Levoglucosan kinase Lgk gene; LC-ESI-MS/MS; RT-PCR; Gene cloning and expression (Xie, H.-j. (251) 313) LexA Synechocystis; Bidirectional hydrogenase; hox; Transcription regulator (Oliveira, P. (251) 59) Lgk gene Levoglucosan kinase; LC-ESI-MS/MS; RT-PCR; Gene cloning and expression (Xie, H.-j. (251) 313) Lignicolous fungi Marine; Diaporthe sp.; Metabolites; Cytotoxic; Antimicrobial (Lin, X. (251) 53) Lipopolysaccharide Bacteriophage /X174; Minor spike H protein; Host-recognition; Conformational change; Phage infection (Inagaki, M. (251) 305) Listeria monocytogenes EGD Penicillin-binding proteins; PBP5; (Korsak, D. (251) 281)
DD-carboxypeptidase;
Murein
Human dermal fibroblasts Exopolysaccharide; Grifola frondosa; Matrix metalloproteinase; Skin aging; UVA-irradiation (Bae, J.T. (251) 347)
Low temperature Cyanobacterial rbp; Anabaena variabilis M3; 5¢-UTR; RNA stability; Downstream box (Ehira, S. (251) 91)
Hydroxymate Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid (Ward, P.G. (251) 227)
Macrocyclic compounds Mycobacterium tuberculosis; Metal complexes (David, S. (251) 119)
Hypocrea ITS1 and 2; tef1; Biogeography; Phylogeny (Zhang, C.-l. (251) 251) Identification Moroccan soft white cheese; Lactic acid bacteria; Biodiversity; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Immunochemical localisation Trehalose; Fungi; Exoenzymes; a,a-Trehalase; Rhizopus microsporus (de Aquino, A.C.M.M. (251) 169) ITS1 and 2 Hypocrea; tef1; Biogeography; Phylogeny (Zhang, C.-l. (251) 251) Lactic acid bacteria Moroccan soft white cheese; Identification; Biodiversity; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Lactobacillus reuteri Orpinomyces; Rumen fungi; Xylanase gene (Liu, J.-R. (251) 233)
Magnesium Saccharomyces cerevisiae; PMR1; hSPCA1; Calcium; Hailey–Hailey disease (Szigeti, R. (251) 333) Marine Lignicolous fungi; Diaporthe Antimicrobial (Lin, X. (251) 53)
sp.;
Metabolites;
Cytotoxic;
Markers Metarhizium; Nutrition; Virulence; Pr1; CN ratio; Starvation (Shah, F.A. (251) 259) Matrix metalloproteinase Exopolysaccharide; Grifola frondosa; Human dermal fibroblasts; Skin aging; UVA-irradiation (Bae, J.T. (251) 347) Metabolite profile Candida dubliniensis; Candida albicans; Statistical classification strategy; NMR spectroscopy; Chemotype; Metabolomics (Himmelreich, U. (251) 327) Metabolites Marine; Lignicolous fungi; Diaporthe sp.; Cytotoxic; Antimicrobial (Lin, X. (251) 53)
Subject Index Volume 251 Metabolomics Candida dubliniensis; Candida albicans; Statistical classification strategy; NMR spectroscopy; Chemotype; Metabolite profile (Himmelreich, U. (251) 327) Metal complexes Mycobacterium tuberculosis; Macrocyclic compounds (David, S. (251) 119) Metarhizium Nutrition; Virulence; Markers; Pr1; CN ratio; Starvation (Shah, F.A. (251) 259) Metarhizium anisopliae Destruxins; Fungal metabolites; Risk assessment; Toxicity; Cell lines (Skrobek, A. (251) 23) Methyl bromide Methyl chloride; Aminobacter (Warner, K.L. (251) 45)
Necrotroph Sclerotinia sclerotiorum; Saprophyte; Pathogenesis; Oxalic acid; Polygalacturonase (Hegedus, D.D. (251) 177) Neisseria meningitidis Plasmid; Shuttle vector (OÕ Dwyer, C.A. (251) 143) Neotyphodium Ergot alkaloids; Clavines; Mycotoxin; Claviceps; Aspergillus fumigatus (Panaccione D.G. (251) 9) Nicotinate Sulfonamide resistance; Sulfamethoxazole; Sulfathiazole; Folate (Kornfeld, O. (251) 137) NMR spectroscopy Candida dubliniensis; Candida albicans; Statistical classification strategy; Chemotype; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327) Nonribosomal peptide synthetases Leaf scald; Polyketide synthases; Sugarcane (Vivien, E. (251) 81)
Methyl chloride Methyl bromide; Aminobacter (Warner, K.L. (251) 45) Microcystis Cyanobacteria; Cell division; DNA replication; FtsZ (Yoshida, T. (251) 149) Minor spike H protein Bacteriophage /X174; Lipopolysaccharide; Host-recognition; Conformational change; Phage infection (Inagaki, M. (251) 305) Moroccan soft white cheese Identification; Lactic acid bacteria; Biodiversity; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Murein Listeria monocytogenes EGD; Penicillin-binding proteins; PBP5; carboxypeptidase (Korsak, D. (251) 281)
367
DD-
npgA Omni-potent suppressor; eRF1; snpA; Aspergillus (Han, K.-H. (251) 155) Nuclease Helicobacter hepaticus; Cytolethal distending toxin; cdtB; Toxin (Dassanayake, R.P. (251) 219) YkuK; DUF458 family; RNase H-like fold; Structure/function prediction; Active site (Kni_zewski, Ł. (251) 341) Nutrition Metarhizium; Virulence; Markers; Pr1; CN ratio; Starvation (Shah, F.A. (251) 259) Omni-potent suppressor eRF1; snpA; npgA; Aspergillus (Han, K.-H. (251) 155)
Mutans Streptococcus mutans; Competence stimulating peptide; Programmed cell death; Biofilms (Qi, F. (251) 321)
Orpinomyces Lactobacillus reuteri; Rumen fungi; Xylanase gene (Liu, J.-R. (251) 233)
Mycobacteria Clotrimazole; Econazole; Antitubercular drugs (Ahmad, Z. (251) 19)
Osmoregulation HtrA; Hha; H-NS; Escherichia coli (Forns, N. (251) 75)
Mycobacterium tuberculosis Macrocyclic compounds; Metal complexes (David, S. (251) 119)
Outer membrane protein Helicobacter pylori; Genetic diversity (Cao, P. (251) 37)
Mycoferritin Aspergillus parasiticus; Aflatoxin; Oxidative stress; Toxigenic potential (Shashidhar, J. (251) 113)
Oxalic acid Sclerotinia sclerotiorum; Necrotroph; Saprophyte; Pathogenesis; Polygalacturonase (Hegedus, D.D. (251) 177)
Mycoparasitism Trichoderma hamatum; Subtractive hybridisation; Biological control; SSH (Carpenter, M.A. (251) 105)
Oxidative stress Mycoferritin; Aspergillus parasiticus; Aflatoxin; Toxigenic potential (Shashidhar, J. (251) 113)
Mycotoxin Ergot alkaloids; Clavines; Neotyphodium; Claviceps; Aspergillus fumigatus (Panaccione D.G. (251) 9)
Paralytic shellfish poisoning Toxic dinoflagellate; Alexandrium; Encystment; Differential display; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161)
Cytochrome P450 monooxygenase; Fungal complete genome; Fusarium graminearum species complex; Targeted gene disruption; Trichothecene biosynthetic gene (Tokai, T. (251) 193)
Pathogenesis Sclerotinia sclerotiorum; Necrotroph; Saprophyte; Oxalic acid; Polygalacturonase (Hegedus, D.D. (251) 177)
368
Subject Index Volume 251
PBP5 Listeria monocytogenes EGD; Penicillin-binding carboxypeptidase; Murein (Korsak, D. (251) 281) Penicillin-binding proteins Listeria monocytogenes EGD; PBP5; (Korsak, D. (251) 281)
DD-
Polyketide synthases Leaf scald; Nonribosomal peptide synthetases; Sugarcane (Vivien, E. (251) 81)
Murein
Population structure Arbuscular mycorrhizal fungi; Genetic makeup; Glomeromycota; Homokaryosis; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185)
proteins;
DD-carboxypeptidase;
Phage Burkholderia; B. cepacia complex; Bacteriophages (Seed, K.D. (251) 273) Phage infection Bacteriophage /X174; Minor spike H protein; Lipopolysaccharide; Host-recognition; Conformational change (Inagaki, M. (251) 305) Phenylacetic acid Pseudomonas putida; Aromatic acids; Cinnamic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Phenylacyl-CoA ligase Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Phenylalkanoic acids Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Phenylpropionic acid Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Hydroxymate (Ward, P.G. (251) 227) Phospholipid fatty acid Antibacterial activity; Growth conditions; Pseudomonas fluorescens; Stress (Fouchard, S. (251) 211) Phylogeny Hypocrea; ITS1 and 2; tef1; Biogeography (Zhang, C.-l. (251) 251) PKS Polyketide; Type I polyketide synthase; Xylaria; Degenerate PCR primer; Fungi (Amnuaykanjanasin, A. (251) 125) Plant growth-promoting bacteria Ethylene; ACC deaminase (Glick B.R. (251) 1)
Pr1 Metarhizium; Nutrition; Virulence; Markers; CN ratio; Starvation (Shah, F.A. (251) 259) Programmed cell death Streptococcus mutans; Competence stimulating peptide; Mutans; Biofilms (Qi, F. (251) 321) Protein fingerprinting Moroccan soft white cheese; Identification; Lactic acid bacteria; Biodiversity; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Pseudomonas fluorescens Antibacterial activity; Phospholipid fatty acid; Growth conditions; Stress (Fouchard, S. (251) 211) Pseudomonas putida Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Reproductive mode Arbuscular mycorrhizal fungi; Genetic makeup; Glomeromycota; Homokaryosis; Population structure; Vegetative incompatibility (Pawlowska T.E. (251) 185) Resistance-nodulation-cell division family Cadmium resistance; Caulobacter (Braz, V.S. (251) 289) Restriction endonuclease Rumen; Spirochetes; Treponema (Piknova, M. (251) 99) Rhizopus microsporus Trehalose; Fungi; Exoenzymes; a,a-Trehalase; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169) Rhizosphere Chlorpyrifos degrading bacterium; 3,5,6-Trichloro-2-pyridinol degrading; Alcaligenes faecalis (Yang, L. (251) 67)
Plasmid Neisseria meningitidis; Shuttle vector (OÕ Dwyer, C.A. (251) 143)
Risk assessment Metarhizium anisopliae; Destruxins; Fungal metabolites; Toxicity; Cell lines (Skrobek, A. (251) 23)
PMR1 Saccharomyces cerevisiae; hSPCA1; Calcium; Magnesium; Hailey– Hailey disease (Szigeti, R. (251) 333)
RNA stability Cyanobacterial rbp; Low temperature; Anabaena variabilis M3; 5¢UTR; Downstream box (Ehira, S. (251) 91)
Polygalacturonase Sclerotinia sclerotiorum; Necrotroph; Saprophyte; Pathogenesis; Oxalic acid (Hegedus, D.D. (251) 177)
RNase H-like fold YkuK; DUF458 family; Structure/function prediction; Active site; Nuclease (Kni_zewski, Ł. (251) 341)
Polyketide Type I polyketide synthase; PKS; Xylaria; Degenerate PCR primer; Fungi (Amnuaykanjanasin, A. (251) 125)
RT-PCR Lgk gene; Levoglucosan kinase; LC-ESI-MS/MS; Gene cloning and expression (Xie, H.-j. (251) 313)
Subject Index Volume 251 Rumen Restriction endonuclease; Spirochetes; Treponema (Piknova, M. (251) 99) Rumen fungi Lactobacillus reuteri; Orpinomyces; Xylanase gene (Liu, J.-R. (251) 233) Saccharomyces cerevisiae PMR1; hSPCA1; Calcium; Magnesium; Hailey–Hailey disease (Szigeti, R. (251) 333) Saprophyte Sclerotinia sclerotiorum; Necrotroph; Pathogenesis; Oxalic acid; Polygalacturonase (Hegedus, D.D. (251) 177) Sclerotinia sclerotiorum Necrotroph; Saprophyte; Pathogenesis; Oxalic acid; Polygalacturonase (Hegedus, D.D. (251) 177) Shuttle vector Plasmid; Neisseria meningitidis (OÕ Dwyer, C.A. (251) 143) Skin aging Exopolysaccharide; Grifola frondosa; Human dermal fibroblasts; Matrix metalloproteinase; UVA-irradiation (Bae, J.T. (251) 347) S-layer Caulobacter; Transcription; Type I secretion (Toporowski, M.C. (251) 29) snpA Omni-potent suppressor; eRF1; npgA; Aspergillus (Han, K.-H. (251) 155) Spirochetes Restriction endonuclease; Rumen; Treponema (Piknova, M. (251) 99) Sporulation-specific gene Toxic dinoflagellate; Alexandrium; Paralytic shellfish poisoning; Encystment; Differential display (Hosoi-Tanabe, S. (251) 161) ssb uvrA; ArcA/ArcB; Two-component (Ogasawara, H. (251) 243)
system;
Escherichia
coli
SSH Trichoderma hamatum; Mycoparasitism; Subtractive hybridisation; Biological control (Carpenter, M.A. (251) 105) Starvation Metarhizium; Nutrition; Virulence; Markers; Pr1; CN ratio (Shah, F.A. (251) 259) Statistical classification strategy Candida dubliniensis; Candida albicans; NMR spectroscopy; Chemotype; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327)
369
Structure/function prediction YkuK; DUF458 family; RNase H-like fold; Active site; Nuclease (Kni_zewski, Ł. (251) 341) Subtractive hybridisation Trichoderma hamatum; Mycoparasitism; Biological control; SSH (Carpenter, M.A. (251) 105) Sugarcane Leaf scald; Nonribosomal peptide synthetases; Polyketide synthases (Vivien, E. (251) 81) Sulfamethoxazole Nicotinate; Sulfonamide resistance; Sulfathiazole; Folate (Kornfeld, O. (251) 137) Sulfathiazole Nicotinate; Sulfonamide (Kornfeld, O. (251) 137)
resistance;
Sulfamethoxazole;
Folate
Sulfonamide resistance Nicotinate; Sulfamethoxazole; Sulfathiazole; Folate (Kornfeld, O. (251) 137) Synechocystis Bidirectional hydrogenase; hox; Transcription regulator; LexA (Oliveira, P. (251) 59) Targeted gene disruption Cytochrome P450 monooxygenase; Fungal complete genome; Fusarium graminearum species complex; Mycotoxin; Trichothecene biosynthetic gene (Tokai, T. (251) 193) tef1 Hypocrea; ITS1 and 2; Biogeography; Phylogeny (Zhang, C.-l. (251) 251) Toxic dinoflagellate Alexandrium; Paralytic shellfish poisoning; Encystment; Differential display; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161) Toxicity Metarhizium anisopliae; Destruxins; Fungal assessment; Cell lines (Skrobek, A. (251) 23)
metabolites;
Risk
Toxigenic potential Mycoferritin; Aspergillus parasiticus; Aflatoxin; Oxidative stress (Shashidhar, J. (251) 113) Toxin Helicobacter hepaticus; Cytolethal distending toxin; cdtB; Nuclease (Dassanayake, R.P. (251) 219) Transcription Caulobacter; S-layer; Type I secretion (Toporowski, M.C. (251) 29)
Streptococcus mutans Competence stimulating peptide; Programmed cell death; Mutans; Biofilms (Qi, F. (251) 321)
Transcription regulator Synechocystis; Bidirectional hydrogenase; hox; LexA (Oliveira, P. (251) 59)
Stress Antibacterial activity; Phospholipid fatty acid; Growth conditions; Pseudomonas fluorescens (Fouchard, S. (251) 211)
a,a-Trehalase Trehalose; Fungi; Exoenzymes; Rhizopus microsporus; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169)
370
Subject Index Volume 251
Trehalose Fungi; Exoenzymes; a,a-Trehalase; Rhizopus microsporus; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169)
5¢-UTR Cyanobacterial rbp; Low temperature; Anabaena variabilis M3; RNA stability; Downstream box (Ehira, S. (251) 91)
Treponema Restriction endonuclease; Rumen; Spirochetes (Piknova, M. (251) 99)
UVA-irradiation Exopolysaccharide; Grifola frondosa; Human dermal fibroblasts; Matrix metalloproteinase; Skin aging (Bae, J.T. (251) 347)
3,5,6-Trichloro-2-pyridinol degrading Chlorpyrifos degrading bacterium; Rhizosphere; Alcaligenes faecalis (Yang, L. (251) 67)
uvrA ssb; ArcA/ArcB; Two-component system; Escherichia coli (Ogasawara, H. (251) 243)
Trichoderma hamatum Mycoparasitism; Subtractive hybridisation; Biological control; SSH (Carpenter, M.A. (251) 105)
Vegetative incompatibility Arbuscular mycorrhizal fungi; Genetic makeup; Glomeromycota; Homokaryosis; Population structure; Reproductive mode (Pawlowska T.E. (251) 185)
Trichothecene biosynthetic gene Cytochrome P450 monooxygenase; Fungal complete genome; Fusarium graminearum species complex; Mycotoxin; Targeted gene disruption (Tokai, T. (251) 193)
Virulence Metarhizium; Nutrition; Markers; Pr1; CN ratio; Starvation (Shah, F.A. (251) 259)
Two-component system uvrA; ssb; ArcA/ArcB; Escherichia coli (Ogasawara, H. (251) 243) Type I polyketide synthase Polyketide; PKS; Xylaria; Degenerate (Amnuaykanjanasin, A. (251) 125)
PCR
primer;
Fungi
Type I secretion Caulobacter; S-layer; Transcription (Toporowski, M.C. (251) 29)
Xylanase gene Lactobacillus reuteri; Orpinomyces; Rumen fungi (Liu, J.-R. (251) 233) Xylaria Polyketide; Type I polyketide synthase; PKS; Degenerate PCR primer; Fungi (Amnuaykanjanasin, A. (251) 125) YkuK DUF458 family; RNase H-like fold; Structure/function prediction; Active site; Nuclease (Kni_zewski, Ł. (251) 341)
FEMS Microbiology Letters
Subject Index Volume 251 ACC deaminase Plant growth-promoting bacteria; Ethylene (Glick B.R. (251) 1) Active site YkuK; DUF458 family; RNase H-like fold; Structure/function prediction; Nuclease (Kni_zewski, Ł. (251) 341) Aflatoxin Mycoferritin; Aspergillus parasiticus; Oxidative stress; Toxigenic potential (Shashidhar, J. (251) 113)
ArcA/ArcB uvrA; ssb; Two-component system; Escherichia coli (Ogasawara, H. (251) 243) Aromatic acids Pseudomonas putida; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Aspergillus Omni-potent suppressor; eRF1; snpA; npgA (Han, K.-H. (251) 155)
Alcaligenes faecalis Chlorpyrifos degrading bacterium; 3,5,6-Trichloro-2-pyridinol degrading; Rhizosphere (Yang, L. (251) 67)
Aspergillus fumigatus Ergot alkaloids; Clavines; Mycotoxin; Neotyphodium; Claviceps (Panaccione D.G. (251) 9)
Alexandrium Toxic dinoflagellate; Paralytic shellfish poisoning; Encystment; Differential display; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161)
Aspergillus nidulans Apoptosis; Autolysis; fluG; brlA (Emri, T. (251) 297)
Aminobacter Methyl chloride; Methyl bromide (Warner, K.L. (251) 45) Anabaena variabilis M3 Cyanobacterial rbp; Low temperature; 5¢-UTR; RNA stability; Downstream box (Ehira, S. (251) 91)
Aspergillus parasiticus Mycoferritin; Aflatoxin; (Shashidhar, J. (251) 113)
Oxidative
stress;
Toxigenic
potential
Autolysis Aspergillus nidulans; Apoptosis; fluG; brlA (Emri, T. (251) 297) B. cepacia complex Burkholderia; Bacteriophages; Phage (Seed, K.D. (251) 273)
Antibacterial activity Phospholipid fatty acid; Growth conditions; Pseudomonas fluorescens; Stress (Fouchard, S. (251) 211)
Bacteriophage /X174 Minor spike H protein; Lipopolysaccharide; Host-recognition; Conformational change; Phage infection (Inagaki, M. (251) 305)
Antimicrobial Marine; Lignicolous fungi; Diaporthe sp.; Metabolites; Cytotoxic (Lin, X. (251) 53)
Bacteriophages Burkholderia; B. cepacia complex; Phage (Seed, K.D. (251) 273)
Antitubercular drugs Clotrimazole; Econazole; Mycobacteria (Ahmad, Z. (251) 19) Apoptosis Aspergillus nidulans; Autolysis; fluG; brlA (Emri, T. (251) 297) Arbuscular mycorrhizal fungi Genetic makeup; Glomeromycota; Homokaryosis; Population structure; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185)
doi:10.1016/S0378-1097(05)00632-4
Bidirectional hydrogenase Synechocystis; hox; Transcription regulator; LexA (Oliveira, P. (251) 59) Biodiversity Moroccan soft white cheese; Identification; Lactic acid bacteria; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Biofilms Streptococcus mutans; Competence stimulating peptide; Programmed cell death; Mutans (Qi, F. (251) 321)
364
Subject Index Volume 251 Chlorpyrifos degrading bacterium 3,5,6-Trichloro-2-pyridinol degrading; faecalis (Yang, L. (251) 67)
Biogeography Hypocrea; ITS1 and 2; tef1; Phylogeny (Zhang, C.-l. (251) 251) Biological control Trichoderma hamatum; Mycoparasitism; Subtractive hybridisation; SSH (Carpenter, M.A. (251) 105) brlA Aspergillus nidulans; Apoptosis; Autolysis; fluG (Emri, T. (251) 297) Burkholderia B. cepacia complex; Bacteriophages; Phage (Seed, K.D. (251) 273) Cadherin superfamily Calcium-binding proteins; Carbohydrate binding proteins (Cao, L. (251) 203)
Rhizosphere;
Alcaligenes
Cinnamic acid Pseudomonas putida; Aromatic acids; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Claviceps Ergot alkaloids; Clavines; Mycotoxin; Neotyphodium; Aspergillus fumigatus (Panaccione D.G. (251) 9) Clavines Ergot alkaloids; Mycotoxin; Neotyphodium; Claviceps; Aspergillus fumigatus (Panaccione D.G. (251) 9)
Cadmium resistance Resistance-nodulation-cell division family; Caulobacter (Braz, V.S. (251) 289)
Clotrimazole Econazole; Antitubercular drugs; Mycobacteria (Ahmad, Z. (251) 19)
Calcium Saccharomyces cerevisiae; PMR1; hSPCA1; Magnesium; Hailey– Hailey disease (Szigeti, R. (251) 333)
CN ratio Metarhizium; Nutrition; Virulence; Markers; Pr1; Starvation (Shah, F.A. (251) 259)
Calcium-binding proteins Cadherin superfamily; Carbohydrate binding proteins (Cao, L. (251) 203)
Competence stimulating peptide Streptococcus mutans; Programmed cell death; Mutans; Biofilms (Qi, F. (251) 321)
Candida albicans Candida dubliniensis; Statistical classification strategy; NMR spectroscopy; Chemotype; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327)
Conformational change Bacteriophage /X174; Minor spike H protein; Lipopolysaccharide; Host-recognition; Phage infection (Inagaki, M. (251) 305)
Candida dubliniensis Candida albicans; Statistical classification strategy; NMR spectroscopy; Chemotype; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327) Carbohydrate binding proteins Calcium-binding proteins; Cadherin superfamily (Cao, L. (251) 203) Caulobacter S-layer; Transcription; Type I secretion (Toporowski, M.C. (251) 29) Caulobacter Cadmium resistance; Resistance-nodulation-cell division family (Braz, V.S. (251) 289) cdtB Helicobacter hepaticus; Cytolethal distending toxin; Toxin; Nuclease (Dassanayake, R.P. (251) 219) Cell division Cyanobacteria; DNA replication; FtsZ; Microcystis (Yoshida, T. (251) 149) Cell lines Metarhizium anisopliae; Destruxins; Fungal assessment; Toxicity (Skrobek, A. (251) 23)
metabolites;
Risk
Chemotype Candida dubliniensis; Candida albicans; Statistical classification strategy; NMR spectroscopy; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327)
Cyanobacteria Cell division; DNA replication; FtsZ; Microcystis (Yoshida, T. (251) 149) Cyanobacterial rbp Low temperature; Anabaena variabilis M3; 5¢-UTR; RNA stability; Downstream box (Ehira, S. (251) 91) Cytochrome P450 monooxygenase Fungal complete genome; Fusarium graminearum species complex; Mycotoxin; Targeted gene disruption; Trichothecene biosynthetic gene (Tokai, T. (251) 193) Cytolethal distending toxin Helicobacter hepaticus; cdtB; Toxin; Nuclease (Dassanayake, R.P. (251) 219) Cytotoxic Marine; Lignicolous fungi; Diaporthe sp.; Metabolites; Antimicrobial (Lin, X. (251) 53) DD-carboxypeptidase
Listeria monocytogenes EGD; Penicillin-binding proteins; PBP5; Murein (Korsak, D. (251) 281) Degenerate PCR primer Polyketide; Type I polyketide synthase; PKS; Xylaria; Fungi (Amnuaykanjanasin, A. (251) 125) Destruxins Metarhizium anisopliae; Fungal metabolites; Toxicity; Cell lines (Skrobek, A. (251) 23)
Risk
assessment;
Subject Index Volume 251
365
Diaporthe sp. Marine; Lignicolous fungi; Metabolites; Cytotoxic; Antimicrobial (Lin, X. (251) 53)
FtsZ Cyanobacteria; Cell division; DNA replication; Microcystis (Yoshida, T. (251) 149)
Differential display Toxic dinoflagellate; Alexandrium; Paralytic shellfish poisoning; Encystment; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161)
Fungal complete genome Cytochrome P450 monooxygenase; Fusarium graminearum species complex; Mycotoxin; Targeted gene disruption; Trichothecene biosynthetic gene (Tokai, T. (251) 193)
DNA replication Cyanobacteria; Cell division; FtsZ; Microcystis (Yoshida, T. (251) 149) Downstream box Cyanobacterial rbp; Low temperature; Anabaena variabilis M3; 5¢UTR; RNA stability (Ehira, S. (251) 91) DUF458 family YkuK; RNase H-like fold; Structure/function prediction; Active site; Nuclease (Kni_zewski, Ł. (251) 341) Econazole Clotrimazole; Antitubercular drugs; Mycobacteria (Ahmad, Z. (251) 19) Encystment Toxic dinoflagellate; Alexandrium; Paralytic shellfish poisoning; Differential display; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161) Enzyme assays Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) eRF1 Omni-potent suppressor; snpA; npgA; Aspergillus (Han, K.-H. (251) 155) Ergot alkaloids Clavines; Mycotoxin; Neotyphodium; Claviceps; Aspergillus fumigatus (Panaccione D.G. (251) 9) Escherichia coli HtrA; Hha; H-NS; Osmoregulation (Forns, N. (251) 75) uvrA; ssb; ArcA/ArcB; Two-component system (Ogasawara, H. (251) 243) Ethylene Plant growth-promoting bacteria; ACC deaminase (Glick B.R. (251) 1) Exoenzymes Trehalose; Fungi; a,a-Trehalase; Rhizopus microsporus; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169) Exopolysaccharide Grifola frondosa; Human dermal fibroblasts; Matrix metalloproteinase; Skin aging; UVA-irradiation (Bae, J.T. (251) 347)
Fungal metabolites Metarhizium anisopliae; Destruxins; Risk assessment; Toxicity; Cell lines (Skrobek, A. (251) 23) Fungi Polyketide; Type I polyketide synthase; PKS; Xylaria; Degenerate PCR primer (Amnuaykanjanasin, A. (251) 125) Trehalose; Exoenzymes; a,a-Trehalase; Rhizopus microsporus; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169) Fusarium graminearum species complex Cytochrome P450 monooxygenase; Fungal complete genome; Mycotoxin; Targeted gene disruption; Trichothecene biosynthetic gene (Tokai, T. (251) 193) GelCompar II Moroccan soft white cheese; Identification; Lactic acid bacteria; Biodiversity; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting (Ouadghiri, M. (251) 267) Gene cloning and expression Lgk gene; Levoglucosan kinase; LC-ESI-MS/MS; RT-PCR (Xie, H.-j. (251) 313) Genetic diversity Helicobacter pylori; Outer membrane protein (Cao, P. (251) 37) Genetic makeup Arbuscular mycorrhizal fungi; Glomeromycota; Homokaryosis; Population structure; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185) Glomeromycota Arbuscular mycorrhizal fungi; Genetic makeup; Homokaryosis; Population structure; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185) Grifola frondosa Exopolysaccharide; Human dermal fibroblasts; Matrix metalloproteinase; Skin aging; UVA-irradiation (Bae, J.T. (251) 347) Growth conditions Antibacterial activity; Phospholipid fatty fluorescens; Stress (Fouchard, S. (251) 211)
acid;
Pseudomonas
fluG Aspergillus nidulans; Apoptosis; Autolysis; brlA (Emri, T. (251) 297)
(GTG)5-PCR genomic fingerprinting Moroccan soft white cheese; Identification; Lactic acid bacteria; Biodiversity; Protein fingerprinting; GelCompar II (Ouadghiri, M. (251) 267)
Folate Nicotinate; Sulfonamide resistance; Sulfamethoxazole; Sulfathiazole (Kornfeld, O. (251) 137)
Hailey–Hailey disease Saccharomyces cerevisiae; PMR1; hSPCA1; Calcium; Magnesium (Szigeti, R. (251) 333)
366
Subject Index Volume 251
Helicobacter hepaticus Cytolethal distending toxin; cdtB; Toxin; Nuclease (Dassanayake, R.P. (251) 219)
LC-ESI-MS/MS Lgk gene; Levoglucosan kinase; RT-PCR; Gene cloning and expression (Xie, H.-j. (251) 313)
Helicobacter pylori Outer membrane protein; Genetic diversity (Cao, P. (251) 37)
Leaf scald Nonribosomal peptide synthetases; Polyketide synthases; Sugarcane (Vivien, E. (251) 81)
Hha HtrA; H-NS; Osmoregulation; Escherichia coli (Forns, N. (251) 75) H-NS HtrA; Hha; Osmoregulation; Escherichia coli (Forns, N. (251) 75) Homokaryosis Arbuscular mycorrhizal fungi; Genetic makeup; Glomeromycota; Population structure; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185) Host-recognition Bacteriophage /X174; Minor spike H protein; Lipopolysaccharide; Conformational change; Phage infection (Inagaki, M. (251) 305) hox Synechocystis; Bidirectional hydrogenase; Transcription regulator; LexA (Oliveira, P. (251) 59) hSPCA1 Saccharomyces cerevisiae; PMR1; Calcium; Magnesium; Hailey– Hailey disease (Szigeti, R. (251) 333) HtrA Hha; H-NS; Osmoregulation; Escherichia coli (Forns, N. (251) 75)
Levoglucosan kinase Lgk gene; LC-ESI-MS/MS; RT-PCR; Gene cloning and expression (Xie, H.-j. (251) 313) LexA Synechocystis; Bidirectional hydrogenase; hox; Transcription regulator (Oliveira, P. (251) 59) Lgk gene Levoglucosan kinase; LC-ESI-MS/MS; RT-PCR; Gene cloning and expression (Xie, H.-j. (251) 313) Lignicolous fungi Marine; Diaporthe sp.; Metabolites; Cytotoxic; Antimicrobial (Lin, X. (251) 53) Lipopolysaccharide Bacteriophage /X174; Minor spike H protein; Host-recognition; Conformational change; Phage infection (Inagaki, M. (251) 305) Listeria monocytogenes EGD Penicillin-binding proteins; PBP5; (Korsak, D. (251) 281)
DD-carboxypeptidase;
Murein
Human dermal fibroblasts Exopolysaccharide; Grifola frondosa; Matrix metalloproteinase; Skin aging; UVA-irradiation (Bae, J.T. (251) 347)
Low temperature Cyanobacterial rbp; Anabaena variabilis M3; 5¢-UTR; RNA stability; Downstream box (Ehira, S. (251) 91)
Hydroxymate Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid (Ward, P.G. (251) 227)
Macrocyclic compounds Mycobacterium tuberculosis; Metal complexes (David, S. (251) 119)
Hypocrea ITS1 and 2; tef1; Biogeography; Phylogeny (Zhang, C.-l. (251) 251) Identification Moroccan soft white cheese; Lactic acid bacteria; Biodiversity; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Immunochemical localisation Trehalose; Fungi; Exoenzymes; a,a-Trehalase; Rhizopus microsporus (de Aquino, A.C.M.M. (251) 169) ITS1 and 2 Hypocrea; tef1; Biogeography; Phylogeny (Zhang, C.-l. (251) 251) Lactic acid bacteria Moroccan soft white cheese; Identification; Biodiversity; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Lactobacillus reuteri Orpinomyces; Rumen fungi; Xylanase gene (Liu, J.-R. (251) 233)
Magnesium Saccharomyces cerevisiae; PMR1; hSPCA1; Calcium; Hailey–Hailey disease (Szigeti, R. (251) 333) Marine Lignicolous fungi; Diaporthe Antimicrobial (Lin, X. (251) 53)
sp.;
Metabolites;
Cytotoxic;
Markers Metarhizium; Nutrition; Virulence; Pr1; CN ratio; Starvation (Shah, F.A. (251) 259) Matrix metalloproteinase Exopolysaccharide; Grifola frondosa; Human dermal fibroblasts; Skin aging; UVA-irradiation (Bae, J.T. (251) 347) Metabolite profile Candida dubliniensis; Candida albicans; Statistical classification strategy; NMR spectroscopy; Chemotype; Metabolomics (Himmelreich, U. (251) 327) Metabolites Marine; Lignicolous fungi; Diaporthe sp.; Cytotoxic; Antimicrobial (Lin, X. (251) 53)
Subject Index Volume 251 Metabolomics Candida dubliniensis; Candida albicans; Statistical classification strategy; NMR spectroscopy; Chemotype; Metabolite profile (Himmelreich, U. (251) 327) Metal complexes Mycobacterium tuberculosis; Macrocyclic compounds (David, S. (251) 119) Metarhizium Nutrition; Virulence; Markers; Pr1; CN ratio; Starvation (Shah, F.A. (251) 259) Metarhizium anisopliae Destruxins; Fungal metabolites; Risk assessment; Toxicity; Cell lines (Skrobek, A. (251) 23) Methyl bromide Methyl chloride; Aminobacter (Warner, K.L. (251) 45)
Necrotroph Sclerotinia sclerotiorum; Saprophyte; Pathogenesis; Oxalic acid; Polygalacturonase (Hegedus, D.D. (251) 177) Neisseria meningitidis Plasmid; Shuttle vector (OÕ Dwyer, C.A. (251) 143) Neotyphodium Ergot alkaloids; Clavines; Mycotoxin; Claviceps; Aspergillus fumigatus (Panaccione D.G. (251) 9) Nicotinate Sulfonamide resistance; Sulfamethoxazole; Sulfathiazole; Folate (Kornfeld, O. (251) 137) NMR spectroscopy Candida dubliniensis; Candida albicans; Statistical classification strategy; Chemotype; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327) Nonribosomal peptide synthetases Leaf scald; Polyketide synthases; Sugarcane (Vivien, E. (251) 81)
Methyl chloride Methyl bromide; Aminobacter (Warner, K.L. (251) 45) Microcystis Cyanobacteria; Cell division; DNA replication; FtsZ (Yoshida, T. (251) 149) Minor spike H protein Bacteriophage /X174; Lipopolysaccharide; Host-recognition; Conformational change; Phage infection (Inagaki, M. (251) 305) Moroccan soft white cheese Identification; Lactic acid bacteria; Biodiversity; Protein fingerprinting; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Murein Listeria monocytogenes EGD; Penicillin-binding proteins; PBP5; carboxypeptidase (Korsak, D. (251) 281)
367
DD-
npgA Omni-potent suppressor; eRF1; snpA; Aspergillus (Han, K.-H. (251) 155) Nuclease Helicobacter hepaticus; Cytolethal distending toxin; cdtB; Toxin (Dassanayake, R.P. (251) 219) YkuK; DUF458 family; RNase H-like fold; Structure/function prediction; Active site (Kni_zewski, Ł. (251) 341) Nutrition Metarhizium; Virulence; Markers; Pr1; CN ratio; Starvation (Shah, F.A. (251) 259) Omni-potent suppressor eRF1; snpA; npgA; Aspergillus (Han, K.-H. (251) 155)
Mutans Streptococcus mutans; Competence stimulating peptide; Programmed cell death; Biofilms (Qi, F. (251) 321)
Orpinomyces Lactobacillus reuteri; Rumen fungi; Xylanase gene (Liu, J.-R. (251) 233)
Mycobacteria Clotrimazole; Econazole; Antitubercular drugs (Ahmad, Z. (251) 19)
Osmoregulation HtrA; Hha; H-NS; Escherichia coli (Forns, N. (251) 75)
Mycobacterium tuberculosis Macrocyclic compounds; Metal complexes (David, S. (251) 119)
Outer membrane protein Helicobacter pylori; Genetic diversity (Cao, P. (251) 37)
Mycoferritin Aspergillus parasiticus; Aflatoxin; Oxidative stress; Toxigenic potential (Shashidhar, J. (251) 113)
Oxalic acid Sclerotinia sclerotiorum; Necrotroph; Saprophyte; Pathogenesis; Polygalacturonase (Hegedus, D.D. (251) 177)
Mycoparasitism Trichoderma hamatum; Subtractive hybridisation; Biological control; SSH (Carpenter, M.A. (251) 105)
Oxidative stress Mycoferritin; Aspergillus parasiticus; Aflatoxin; Toxigenic potential (Shashidhar, J. (251) 113)
Mycotoxin Ergot alkaloids; Clavines; Neotyphodium; Claviceps; Aspergillus fumigatus (Panaccione D.G. (251) 9)
Paralytic shellfish poisoning Toxic dinoflagellate; Alexandrium; Encystment; Differential display; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161)
Cytochrome P450 monooxygenase; Fungal complete genome; Fusarium graminearum species complex; Targeted gene disruption; Trichothecene biosynthetic gene (Tokai, T. (251) 193)
Pathogenesis Sclerotinia sclerotiorum; Necrotroph; Saprophyte; Oxalic acid; Polygalacturonase (Hegedus, D.D. (251) 177)
368
Subject Index Volume 251
PBP5 Listeria monocytogenes EGD; Penicillin-binding carboxypeptidase; Murein (Korsak, D. (251) 281) Penicillin-binding proteins Listeria monocytogenes EGD; PBP5; (Korsak, D. (251) 281)
DD-
Polyketide synthases Leaf scald; Nonribosomal peptide synthetases; Sugarcane (Vivien, E. (251) 81)
Murein
Population structure Arbuscular mycorrhizal fungi; Genetic makeup; Glomeromycota; Homokaryosis; Reproductive mode; Vegetative incompatibility (Pawlowska T.E. (251) 185)
proteins;
DD-carboxypeptidase;
Phage Burkholderia; B. cepacia complex; Bacteriophages (Seed, K.D. (251) 273) Phage infection Bacteriophage /X174; Minor spike H protein; Lipopolysaccharide; Host-recognition; Conformational change (Inagaki, M. (251) 305) Phenylacetic acid Pseudomonas putida; Aromatic acids; Cinnamic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Phenylacyl-CoA ligase Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Phenylalkanoic acids Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Phenylpropionic acid Pseudomonas putida; Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Hydroxymate (Ward, P.G. (251) 227) Phospholipid fatty acid Antibacterial activity; Growth conditions; Pseudomonas fluorescens; Stress (Fouchard, S. (251) 211) Phylogeny Hypocrea; ITS1 and 2; tef1; Biogeography (Zhang, C.-l. (251) 251) PKS Polyketide; Type I polyketide synthase; Xylaria; Degenerate PCR primer; Fungi (Amnuaykanjanasin, A. (251) 125) Plant growth-promoting bacteria Ethylene; ACC deaminase (Glick B.R. (251) 1)
Pr1 Metarhizium; Nutrition; Virulence; Markers; CN ratio; Starvation (Shah, F.A. (251) 259) Programmed cell death Streptococcus mutans; Competence stimulating peptide; Mutans; Biofilms (Qi, F. (251) 321) Protein fingerprinting Moroccan soft white cheese; Identification; Lactic acid bacteria; Biodiversity; (GTG)5-PCR genomic fingerprinting; GelCompar II (Ouadghiri, M. (251) 267) Pseudomonas fluorescens Antibacterial activity; Phospholipid fatty acid; Growth conditions; Stress (Fouchard, S. (251) 211) Pseudomonas putida Aromatic acids; Cinnamic acid; Phenylacetic acid; Enzyme assays; Phenylacyl-CoA ligase; Phenylalkanoic acids; Phenylpropionic acid; Hydroxymate (Ward, P.G. (251) 227) Reproductive mode Arbuscular mycorrhizal fungi; Genetic makeup; Glomeromycota; Homokaryosis; Population structure; Vegetative incompatibility (Pawlowska T.E. (251) 185) Resistance-nodulation-cell division family Cadmium resistance; Caulobacter (Braz, V.S. (251) 289) Restriction endonuclease Rumen; Spirochetes; Treponema (Piknova, M. (251) 99) Rhizopus microsporus Trehalose; Fungi; Exoenzymes; a,a-Trehalase; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169) Rhizosphere Chlorpyrifos degrading bacterium; 3,5,6-Trichloro-2-pyridinol degrading; Alcaligenes faecalis (Yang, L. (251) 67)
Plasmid Neisseria meningitidis; Shuttle vector (OÕ Dwyer, C.A. (251) 143)
Risk assessment Metarhizium anisopliae; Destruxins; Fungal metabolites; Toxicity; Cell lines (Skrobek, A. (251) 23)
PMR1 Saccharomyces cerevisiae; hSPCA1; Calcium; Magnesium; Hailey– Hailey disease (Szigeti, R. (251) 333)
RNA stability Cyanobacterial rbp; Low temperature; Anabaena variabilis M3; 5¢UTR; Downstream box (Ehira, S. (251) 91)
Polygalacturonase Sclerotinia sclerotiorum; Necrotroph; Saprophyte; Pathogenesis; Oxalic acid (Hegedus, D.D. (251) 177)
RNase H-like fold YkuK; DUF458 family; Structure/function prediction; Active site; Nuclease (Kni_zewski, Ł. (251) 341)
Polyketide Type I polyketide synthase; PKS; Xylaria; Degenerate PCR primer; Fungi (Amnuaykanjanasin, A. (251) 125)
RT-PCR Lgk gene; Levoglucosan kinase; LC-ESI-MS/MS; Gene cloning and expression (Xie, H.-j. (251) 313)
Subject Index Volume 251 Rumen Restriction endonuclease; Spirochetes; Treponema (Piknova, M. (251) 99) Rumen fungi Lactobacillus reuteri; Orpinomyces; Xylanase gene (Liu, J.-R. (251) 233) Saccharomyces cerevisiae PMR1; hSPCA1; Calcium; Magnesium; Hailey–Hailey disease (Szigeti, R. (251) 333) Saprophyte Sclerotinia sclerotiorum; Necrotroph; Pathogenesis; Oxalic acid; Polygalacturonase (Hegedus, D.D. (251) 177) Sclerotinia sclerotiorum Necrotroph; Saprophyte; Pathogenesis; Oxalic acid; Polygalacturonase (Hegedus, D.D. (251) 177) Shuttle vector Plasmid; Neisseria meningitidis (OÕ Dwyer, C.A. (251) 143) Skin aging Exopolysaccharide; Grifola frondosa; Human dermal fibroblasts; Matrix metalloproteinase; UVA-irradiation (Bae, J.T. (251) 347) S-layer Caulobacter; Transcription; Type I secretion (Toporowski, M.C. (251) 29) snpA Omni-potent suppressor; eRF1; npgA; Aspergillus (Han, K.-H. (251) 155) Spirochetes Restriction endonuclease; Rumen; Treponema (Piknova, M. (251) 99) Sporulation-specific gene Toxic dinoflagellate; Alexandrium; Paralytic shellfish poisoning; Encystment; Differential display (Hosoi-Tanabe, S. (251) 161) ssb uvrA; ArcA/ArcB; Two-component (Ogasawara, H. (251) 243)
system;
Escherichia
coli
SSH Trichoderma hamatum; Mycoparasitism; Subtractive hybridisation; Biological control (Carpenter, M.A. (251) 105) Starvation Metarhizium; Nutrition; Virulence; Markers; Pr1; CN ratio (Shah, F.A. (251) 259) Statistical classification strategy Candida dubliniensis; Candida albicans; NMR spectroscopy; Chemotype; Metabolite profile; Metabolomics (Himmelreich, U. (251) 327)
369
Structure/function prediction YkuK; DUF458 family; RNase H-like fold; Active site; Nuclease (Kni_zewski, Ł. (251) 341) Subtractive hybridisation Trichoderma hamatum; Mycoparasitism; Biological control; SSH (Carpenter, M.A. (251) 105) Sugarcane Leaf scald; Nonribosomal peptide synthetases; Polyketide synthases (Vivien, E. (251) 81) Sulfamethoxazole Nicotinate; Sulfonamide resistance; Sulfathiazole; Folate (Kornfeld, O. (251) 137) Sulfathiazole Nicotinate; Sulfonamide (Kornfeld, O. (251) 137)
resistance;
Sulfamethoxazole;
Folate
Sulfonamide resistance Nicotinate; Sulfamethoxazole; Sulfathiazole; Folate (Kornfeld, O. (251) 137) Synechocystis Bidirectional hydrogenase; hox; Transcription regulator; LexA (Oliveira, P. (251) 59) Targeted gene disruption Cytochrome P450 monooxygenase; Fungal complete genome; Fusarium graminearum species complex; Mycotoxin; Trichothecene biosynthetic gene (Tokai, T. (251) 193) tef1 Hypocrea; ITS1 and 2; Biogeography; Phylogeny (Zhang, C.-l. (251) 251) Toxic dinoflagellate Alexandrium; Paralytic shellfish poisoning; Encystment; Differential display; Sporulation-specific gene (Hosoi-Tanabe, S. (251) 161) Toxicity Metarhizium anisopliae; Destruxins; Fungal assessment; Cell lines (Skrobek, A. (251) 23)
metabolites;
Risk
Toxigenic potential Mycoferritin; Aspergillus parasiticus; Aflatoxin; Oxidative stress (Shashidhar, J. (251) 113) Toxin Helicobacter hepaticus; Cytolethal distending toxin; cdtB; Nuclease (Dassanayake, R.P. (251) 219) Transcription Caulobacter; S-layer; Type I secretion (Toporowski, M.C. (251) 29)
Streptococcus mutans Competence stimulating peptide; Programmed cell death; Mutans; Biofilms (Qi, F. (251) 321)
Transcription regulator Synechocystis; Bidirectional hydrogenase; hox; LexA (Oliveira, P. (251) 59)
Stress Antibacterial activity; Phospholipid fatty acid; Growth conditions; Pseudomonas fluorescens (Fouchard, S. (251) 211)
a,a-Trehalase Trehalose; Fungi; Exoenzymes; Rhizopus microsporus; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169)
370
Subject Index Volume 251
Trehalose Fungi; Exoenzymes; a,a-Trehalase; Rhizopus microsporus; Immunochemical localisation (de Aquino, A.C.M.M. (251) 169)
5¢-UTR Cyanobacterial rbp; Low temperature; Anabaena variabilis M3; RNA stability; Downstream box (Ehira, S. (251) 91)
Treponema Restriction endonuclease; Rumen; Spirochetes (Piknova, M. (251) 99)
UVA-irradiation Exopolysaccharide; Grifola frondosa; Human dermal fibroblasts; Matrix metalloproteinase; Skin aging (Bae, J.T. (251) 347)
3,5,6-Trichloro-2-pyridinol degrading Chlorpyrifos degrading bacterium; Rhizosphere; Alcaligenes faecalis (Yang, L. (251) 67)
uvrA ssb; ArcA/ArcB; Two-component system; Escherichia coli (Ogasawara, H. (251) 243)
Trichoderma hamatum Mycoparasitism; Subtractive hybridisation; Biological control; SSH (Carpenter, M.A. (251) 105)
Vegetative incompatibility Arbuscular mycorrhizal fungi; Genetic makeup; Glomeromycota; Homokaryosis; Population structure; Reproductive mode (Pawlowska T.E. (251) 185)
Trichothecene biosynthetic gene Cytochrome P450 monooxygenase; Fungal complete genome; Fusarium graminearum species complex; Mycotoxin; Targeted gene disruption (Tokai, T. (251) 193)
Virulence Metarhizium; Nutrition; Markers; Pr1; CN ratio; Starvation (Shah, F.A. (251) 259)
Two-component system uvrA; ssb; ArcA/ArcB; Escherichia coli (Ogasawara, H. (251) 243) Type I polyketide synthase Polyketide; PKS; Xylaria; Degenerate (Amnuaykanjanasin, A. (251) 125)
PCR
primer;
Fungi
Type I secretion Caulobacter; S-layer; Transcription (Toporowski, M.C. (251) 29)
Xylanase gene Lactobacillus reuteri; Orpinomyces; Rumen fungi (Liu, J.-R. (251) 233) Xylaria Polyketide; Type I polyketide synthase; PKS; Degenerate PCR primer; Fungi (Amnuaykanjanasin, A. (251) 125) YkuK DUF458 family; RNase H-like fold; Structure/function prediction; Active site; Nuclease (Kni_zewski, Ł. (251) 341)