The optical rotatory dispersion of the β structure of poly-l-lysine and poly-l-serine

The optical rotatory dispersion of the β structure of poly-l-lysine and poly-l-serine

BIOCHEMICAL Vol. 23, No. 2, 1966 AND BIOPHYSICAL RESEARCH COMMUNICATIONS THE OPTICAL ROTATORY DISPERSION OF THE 6 STRUCTURE OF POLY-L-LYSINE Betty ...

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BIOCHEMICAL

Vol. 23, No. 2, 1966

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

THE OPTICAL ROTATORY DISPERSION OF THE 6 STRUCTURE OF POLY-L-LYSINE Betty

Davidson,

AND POLY-L-SERINEl and Gerald

Nancy Tooney2

D. Fasman3

Graduate Department of Biochemistry Brandeis University, Waltham, Massachusetts (Publication No. 416)

Received

March

17, 1966

Optical technique

rotatory

dispersion

among those

(ORD) has become an important

used to study

the

conformation

and synthetic

polypeptides

in solution

(Blout,

DOW r 1961;

Fasman, 1963).

Although

the a-helical

conformations

have been characterized

ultraviolet

ORD (Blout

and Yang, visible 1960; ton,

1965),

the

et al., --

1963;

Ikeda

et -- al.,

measurements

are far

ponsible

the Cotton

for

ORD spectrum Shechter,

1962;

1964;

removed

has been reported

regions

et al., --

1962;

1965; only

Harrap

and Yahara,

The solid

by farIizuka

in the

(Fasman and Blout,

from the electronic

for

and random

has been studied

Imahori

effects.

Urnes and

Yang and McCabe,

spectral

1961; Bradbury

Wada et al.,

1960;

in aqueous solution

%-conformation

and near ultraviolet

of proteins

state

one B-structure

and Staple-

1964).

These

transitions far

res-

ultraviolet

(Blout

and

1963).

1 For the previous paper in this series see Sage, H. J. and Fasman, G. D., Biochemistry 2, 286 (1966). 2 U. S. Public Health Service Predoctoral Fellow 3This work was done during the tenure of an Established Investiqatorship of the American heart Association. Inquiries should be addressed to Gerald D. Fasman

156

Vol. 23, No. 2, 1966

We wish

BIOCHEMICAL

to describe

ORD parameters

of the

of poly-L-lysine X-ray

ultraviolet

% conformation

state

studies

1962;

Imahori

Yahara

et .- al., -

1963).

an oriented

reported of

I

I 210

and Shechter

%-structure

220

the

in the

is seen in Fig.

by Blout

200

provide

film

and

and

evidence

that

1960; Bradbury

and Imahori,

200-290

1.

This

(1963)

as

for

1963;

rnv region, curve

is simi

the ORD of

of poly-L-isoleucine.

1

I

1

230

240

250

WAVE

(Imahori

f3 conformation

1964; Yahara

The ORD curve,

the

data

(Fasman and Blout,

and Yahara,

of poly-L-serine

film

1963) possesses

derivatives

et al., --

to that

185 rnp)

of a poly-L-serine

and infrared

poly-L-serine

O-blocked

of a film

(280 to

in aqueous solution.

diffraction

solid

does its

lar

far

1964; Bohak and Katchalski,

Yahara, in the

the

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

LENGTH

1 260

270

I 260

IN rnp

Fig. 1. Poly-L-serine (#NT-2-374-27) cast on a quartz disc from trifluoroacetic acid. The polymer was prepared by unblocking poly-0-tertiary-butyl-L-serine, with anhydrous HCl Specific viscosity of blocked polymer and HBr in benzene. in dichloroacetic acid (0.2%) is 0.52.

.

157

Vol. 23, No. 2, 1966

Previous and infrared and Doty, fraction

BIOCHEMICAL

studies,

1962;

(Shmueli

conditions

utilizing

spectroscopy 1958,

the

(Blout

techniques

and Lenormant,

Rosenheck and Doty,

and Traub,

poly-L-lysine

to a B conformation.

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

1965),

1957; Applequist

1961) and X-ray

have shown that

undergoes In the work

of ultraviolet

a transition reported

here,

under

difcertain

from an cc-helical the

ct + B transi-

60.000

70,000

60,000

50,000

40,000

‘E

30,000

20.000

10,000

0

- 10.000

-20,000 180

200 Wovelength

Figure

2.

220

240

m/.~

The ORD of ci and B poly-L-lysine

CL: Poly-L-lysine*HCl (Sample BD-1-10-28, intrinsic viscosity in 1M NaCl at pH 4.0 = 0.67) was dissolved in water and the pH adjusted to 11.06 with NaOH. The 0.0123% solution was filtered through an alkali resistent millipore filter into a water jacketed cell of 1 mm path length. The ORD was determined at 22.%OC. obtaining curve Q, the sample was heated, 51°C, in 6: After situ for about 15 minutes. When no further decrease in [rnv was noted, the cell and contents were cooled to 22.5' and CL&% mU i3 was obtained. A Cary 60 spectropolarimeter was used for the measurements. The solvent reference solution was water adjusted to pH 11.08. Polymer concentration was. determined by a modified micro-biuret procedure (Zamenhof and Chargaff, 1963).

158

BIOCHEMICAL

Vol. 23, No. 2, 1966

tion

was accomplished

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

by heating

(Applequist

and Doty,

Rosenheck

and Doty,

1961) an aqueous solution

at around

50'

no further

this

point

initial

until

the transition

a and final

The experimental of

was judged

conditions

temperature

or concentration

observation

might

parameters film

of

for

the

cross-B

B poly-L-serine.

The wavelength is similar reported

(Townend et -- al.,

for

(Table

190 mu region

violet

that

1961; Tinoco

the

ORD film

et

agree well for

of the

with

circular

random form of,poly-L-lysine

acid

in magnitude

(Blout

over

et -- al.,

points

to the reported

positions

1962)(Table are slightly

I).

than

1962;

that

Iizuka

at wavelengths

and 6 forms of the

parameters

the

the same preparation.

different

The cross

al.,

an

of the ORD peak and trough

1966)

the a-helical

than

and a

perhaps

correspond

maxima for

and Doty,

I).

B rather

of ~1and 6 poly-L-lysine

random poly-L-qlutamic

1965)

The latter

the ORD

of the ORD trough but

the

I summarizes

The positions

in position,

and Yang, the

Table

2.

The rate

either

solution.

At

of the

legend.

by increasing

a and B forms of poly-L-lysine data

ORD curves

an intermolecular

structure.

mu was noted.

in the

of the polymer

indicate

polymer

are shown in Fig.

are described

of aqueous solutions

dichroism

[m'llgg

complete.

was increased

1962;

of the helical

$ form of poly-L-lysine

the 11 + 8 transition

intramoleoular

change in

1958,

of the ultra-

polymer

It

should

displaced

in

(Rosenheck be noted

from those

in

solution. The a0 and b. values (Moffitt,

1956;

to evaluate

Moffitt

varied

and Yang,

the various

the b. and a0 values

obtained

of the

W'ada et al.,

1963;

Ikeda

1961;

et al., --

the wavelength

region

1964).

conformations.

B-structure,

using

and a0 = 350 to

Bradbury

et al., --

The values

460-278

equation

1956) have frequently

polypeptide

from b 0 = 0 to +420,

1960;

from the Moffitt

mu are b.

159

Estimates

of

A0 = 212 mu, have

840 (Fasman and Blout,

1962;

found

been used

Harrap

in this

= -241*17

and Stapleton, study

using

and a0 = -62k5.

s 0

c1

B

Poly-L-lysine,

Poly-L-lysine,

1 Rosenheck 2 Tinoco et

of

rotation;

1961

determinations

and Doty, al., 1962

eight

mean residue

205 rnp

(Holzwarth and Doty r 1965) ORD, calculated from circular dichroism

a Reduced b Average

204 mu

and Yang,

mu

204 mu

204.5

230 mu

233 mu

2233 mu

(Iizuka 1965)

Poly-L-glutamate random conformation (Blout et al., 1962 1

Poly-L-lysine*HCl random conformation

film

Poly-L-serine,

position hula

Fasman,

=-22,000

E-17,500

=-16,000

1963

-25.000'300

-6,220'590b

-15,700*870b

ORD Trough

I

[m’la

+29,200'1380b

+74,900*2470b

ORD Peak

mu

205 mu

198.6

210 rnp

position

Table

L

mu

194 rnp

190 rnp

mu

~202 rnp

c197.5

=198 rnv

196-197

220 mu,

223 mu,

222 mu,

Cross-over wavelengths

192 rnpl

190 mu 1,2 1 194 mu

Reported U.V. Maximum

Vol. 23, No. 2, 1966

From the wide various yield

BIOCHEMICAL

range of values

6 structures, different

mation

parallel,

is

dynamic

stability

the

not

in the

present

hydrogen

bonds of

hydrophobic

side

should at

the

it

degree

the

may of B for-

of overlap

the helical

structure,

that

are also

Acknowledgments -

Science

of Health, Society

to break

work was supported

U. S. Public

content

Health

(Massachusetts

in part

to the

extent

structure. by grants

the National of

Service

Division)

the

of proteins

secondary

(GB-2921), Diseases

the

process.

be in error

of the protein

the

has significant

of helical

and Metabolic

of

and to associate

B-conformation

Foundation

mechanism

interactions

necessary

[m'1233 will part

- This

of Arthritis

Cancer

of

final

thermo-

following

from the heating

estimates

Thus,

based on the measurement

the

As the

hydrophobic

The enthalpy

233 mu.

from the National

chain

is derived

the

chain

The added stability

cc-form.

chains

polypeptide

must have a greater

+ 8.

from side

be noted

B-structures

a single

CL. We propose

a + random chain may result

American

extent

one conformation.

6 conformation,

B structure

Institutes

the

length,

that

more than

than

of formation:

Institute

on chain

that

and cross+,

Moreover,

illustrate

of assuming

structure

that

becomes evident

etc.

is capable

rotation

it

anti-parallel

be dependent

These experiments

It

reported

b. and a0 values.

must also

of chains,

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

the National (A5852)

and the

Inc.

References 133rd Nat'1 Meeting Amer. Applequist, J. and Doty, P., Abstracts, Chem. Sot., p. 32Q (1958). Applequist, J. and Doty, P. in "Polyamino Acids, Polypeptides and Proteins" Ed. M. Stahmann, Univ. of Wisconsin Press, p. 161 (1962) . Blout, 1~. R. in "Optical Rotatory Dispersion" Ed. C. Djerassi, McGraw Hill, (1960). Blout, E. R. and Lenormant, H., Nature 179, 960 (1957). Blout, I~. R., Schmier, I. and Simmons, N. S., J. Amer. Chem. Sot. 3193 (1962). a4 -'

161

Vol. 23, No. 2, 1966

BIOCHEMICAL

AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Blout, E. R. and Shechter, E., Biopolymers I, 568 (1963). Bohak, Z. and Katchalski, E., Biochemistry 2, 228 (1963). Bradbury, E. M., Elliott, A. and Hanby, W. E., J. Mol. Biol. 5, 487 (1962). Fasman, G. D. in "Methods in Enzymology" 6, 928 (1963). Fasman, G. D. and Blout, E. R., J. Amer. Chem. Sot. 82, 2262 (1960). B. S. and Stapleton, I. W., Biochim. Biophys. Acta -75, 31 Harrap, (1963). Holzwarth, G. and Doty, P., J. Amer. Chem. Sot. 87, 218 (1965). Iizuka, E. and Yang, J. T., Biochemistry 4, 1249 (1965). Ikeda, S., Maeda, H. and Isemura, T., J. Mol. Biol. 10, 223 (1964). Imahori, K. and Yahara, I., Biopolymers Symp. #l, 421(1964). Moffitt, W., J. Chem. Phys. 25, 467 (1956). Moffitt, W. and Yang, J. T.,Proc. Natl. Acad. Sci. U.S. 42, 596 (1956). Rosenheck, K. and Doty, P., Proc. Natl. Acad. Sci. U.S. 47, 1775 (1961). Shmueli, U. and Traub, W., J. Mol. Biol. 12, 205 (1965). Tinoco, Jr., I., Halpern, A. and Simpson, W. T. in "Polyamino Acids, Polypeptides and Proteins," Ed. M. Stahmann, Univ. of Wisconsin Press, p. 147 (1962). Townend, R., Kumosinski, T. F., Timasheff, S. N., Fasman, G. D. and Davidson, B., Biochem. Biophys. Res. Comm., following paper. Chem. 16, 401 (1961). Urnes, P. and Doty, P., Advances in Prot. Wada, A., Tsuboi, M. and Konishi, E., J. Phys. Chem. 65, 1119 (1961). Yahara, I. and Imahori, K., J. Amer. Chem. Sot. 85, 230 (1963). Yahara, I., Imahori, K., Iitaka, Y. and Tsuboi, M., J. Polymer Sci. B -- 1, 47 (1963). 3, 209 (1965). Yang, J. T. and McCabe, W. J., Biopolymers Zamenhof, S. and Chargaff, E. in "Methods iii Enzymology" 2, 702 (1963). Data of Sarkar, the values

P. K. and Doty, reported herein

P. are in reasonable (personal COmmUniCatiOn).

162

agreement

with