Thermodynamic bases of the stability of protein structure

Thermodynamic bases of the stability of protein structure

Thermochimica Acta, 163 (1990)33-46 ElsevierSciencePublishersB.V.,Amsterdam-PrintedinTheNetherIands THERMODYNAMIC BASES OF THE STABILITY OF PROTEI...

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Thermochimica Acta, 163 (1990)33-46 ElsevierSciencePublishersB.V.,Amsterdam-PrintedinTheNetherIands

THERMODYNAMIC

BASES

OF THE STABILITY

OF PROTEIN

33

STRUCTURE

P‘L. PRIVALOV Institute of Protein Research. Academy 142292 Pushchino, Moscow Region, USSR One can judge disruption; studyinK

the stability

as a change

The native

structure

ssriables

Kowever,

a protein

structure

a variable, system

because

determining

the state

dependence includes

between

of a system

structure

and the reverse

Experimentally, determined absorbed

only by direct upon heatinq

calorimetric material,



= .J;

Since

in the case

intramolecular heat capacity

thermal

measurements

of this

states

heat

temperature

can be

energy

i.e. only capacity

us to

protein

structure,

of enthalpy

of the thermal

of the excess

by

of this

range:

(1)

of protein

is interested

between

in the

it is necessary

in a solution

the heat effect absorbed

one

process,

of the protein

0040~~31/~/$03.5~

functional

of the native

dependence

as

parameters

dT

of the interaction

enerEy

The

ran.ge and permits

of formation

in the considered

disruption

such a solution

temperature

of

of a

on the macroscopic

of the studied.material,

measurements

tACp(T)>,

system.

of disruption

process

basis

temperature

variables

thermodynamic

the temperature

of

or enthalpy,

and extensive

information

the process

by using

and energy,

two basic

in the considered

in detail

conditions,

on the energetic

of a macroscopic

these

all thermodynamic

analyze

effect

temperature

are the conjurtate intensive

be

by changing

the external

only

by

is a should

pH, and concentration

be obtained

its

of the system.

can be disrupted

the information

can

molecule

state

specifying

such as temperat.ure, pressure, denaturants.

by studying

of its structure

of the macroscopic

protein

intensive

of the USSR,

can be determined

a protein

the disruption

system,

different

of a protein

Since

its denaturation.

regarded

of any structure

thus the stability

macroscopic

of Sciences

dilute

to measure enough

proteins

is negligible.

that should

be measured,

by the protein

molecule

that But

the in

the

upon heating,

01999 Eis~vierSciencePubiishers~.V.

the

is

34

also

especiaily

small,

against

absorption

by the solvent,

TheXWfOre*

studies

development which

of protein

of a special

is now known

the background

which

dominates

thermodynamics

supersensitive

as scanning

of intensive

in dilute required

calorimetric

microcalorimetry

heat

solutions. the technique,

(reviewed

in ref.

11.

I

I

O20

f

4a

30

w

50

70

,

t

30

99

T (“C) Fia,

1.

Lysazpme

Temperature in

dependence

solutions

The native temperature,

structure which

intense

analysis

heat

of

heat

and denatured.

states

does

unstable.

single

extremely

Since discrete

a

not usually Thus,

of

exceed

space

these

states.

elobular

native system

of enthalpy,

between

that

shows

that

protein

are a

(ref. 21. has only

by two surfaces thermodynamic these

they

represents

protein system

two

process,

intermediate

the

(N) and denatured

to extensive

The transition

thermodynamic

shows

all

which

(e.g+

and then disrupts

denaturation

globular

macroscopic

small

states,

correspondins!

by the differences

5%,

a small

conditions

profile

The population

of

critical

certain

Detsi2ed

the

this macroscopic

phase

1).

in

single-domain

can describe

{Fig.

capacity

heat

(ref. 2).

of denaturantsl,

absorption

cooperative

macroscopic

up to a

predominate

native

pW values

on the environmental

presence

states

highly

is stable

absorption

the

macroscopic

of the partial

various

depends

ph, ionic strength, uith

with

states

two

(D), one in the functions

is determined

of

35

A;HfT,pH+J

= HD~T,~H,~il

- HN(T,pH,ai),

12)

= SDcT,pH,ail

- SN(T,pH,ai),

(3)

entropy,

AzSfT,pH,aiJ

and Gibbs

energy,

A~GIT,~H,EL~I = GD(T,pHqai) - GN(T,pH,ai)

(4)

- TA$(T.pH,ail

= A;H(T,pH,ail

The midpoint

of the transition


=

is determined

is used as a variable,

transition

between

the native

determined

esperimentally

peak

1).

(Fig.

transition

A!$TGI

where

=

of the heat

sianificant

absorption

7, the entropy

of

16)

proteins

heat

(Fig.

are equal

specific

capacity

It.

at which

concentrations

of the native

and A$&O.

features

increment

of protein that always

denaturation accompanies

IT)

ACp/T = (?AS)/(irrI,

(8)

that the enthalpy

and denatured

is a this

As

= (6AH)/(aTt,

it follows

of

can be

I$H(TGWTG

One of the most

p

states

is

and denatured

AC

from equation

TG is the temperature

process

then the enthalpp

and denatured

from the area

As follows

(6)

=o

- TA$(T,pH,ai)

If the temperature

by the condition

states

should

and entropy strongly

A;,,,,

=
+ J-; +CpdT. G‘

A;SfTf

= $S(Tf

+ _f';~(~~p)/T~dT G

difference

depend

of the native

on temperature:

19)

(10)

36 ?'!:edeaendence be observed protein

directly

temperature

states

the activity point

obtained

a universal

function

of

for the heat It follows

by heating,

are similar

In all cases

can

temperatures,

corrected

bindine: (ref. 3) (Fid. 2). of protein

on temperature

pH or denaturant

is always

is properly

of denaturants

of view.

denaturation

by varying

The enthalpy

if its value

of lisand

denatured

caused

enthalpy

at different

by studying,

denaturation

concentration.

effect

of the denaturation

that

the

pH variation,

or

from the thermodynamic

the heat capacity

increments

of

are indistinguishable.

I

L

I

8

60

SO

I

20

40 ?(Q

Fig.

2.

Enthalpies

of lysozyme

denaturation

obtained

by various

methods and under different conditions plotted against the temperature of denaturation. Circles indicate solutions without guanidinium chloride fGuHC11: open, denaturation by temperature at fixed pH; filled, denaturation by pii at fixed temperatures. Triangles indicate solutions with GuHCl: filled, denaturation by temperature at fixed concentration of GuHCl; open, denaturatian by GuHCl at fixed temperatures (ref. 3). It appeared increment Fig.

l),

in earlier

of denaturation

studies

4) showed

enthalpy

carried

protein

increases

(Fig. 3).

is likely

to be a linear

the range

from zero

temperature

to 80°C,

However,

the native

(ref.

and that

as temperature

of the native

of temperature

in which

(see dependence

range

protein

in parallel

the heat capacity

function

linear

(Fig. 2).

of the native

do not change

capacity

on temperature

on temperature

capacity

While

the heat

by the observed

out over a broad

that the heat

of the denatured

that

does not depend

and this was confirmed

of the denaturation recent

experiments

state

(in any case state

can be

in

37 practically studiedf, the heat capacity of the denatured state is a nonlinear function, k%hiGh asymptotically approaches some constant level at high temperature.

Linear extrapolation of the

beat capacity of the native state above 8Q'C indicates that A$R

is 1iheJ.y to decrease to zero at about 140'.

Fig. 3, Temperature dependence of the partial specific heat capacity of pancreatic ribonucfease (RNaseI, hen egg white lysozyms fbysl, sperm whale myosfobin (Mb), and catslase from Xhermua thermophil us (CTT) . The flattened curves represent RNase and Lys with disrupted disulfide cross-links and apomyoglobin whose polppcptide chains have a random coil conformation uithout noticeable residual structure (ref. 4), The main consequence of the decrease in the beat capacity increment of denaturation with temperature increase is that the e~~ba~~y

and

entropy

of

protein denaturation are increasina:

functions of temperature that as~~tot~~~l~~ Levels at about 140°C iPia. 4).

approach definite

These levels are likely to be

universal for the specific values of the enthafpy and entropy of all compact globular proteins irefs, 4, 5).

If one neglected the temperature dependence of AbC R RI then the specific enthalpy and

entropy of all globular proteins would CQ~B to the same values, However, in this case one could hardly suggest any physical meaning for these universal values, as the

but at about IlOOC.

enthalpy and entropy functions increase continuously above 11O'C. Since in reality an infinite increase of these functions is improb~b~e~ the assumption that AbC N F decreases with temperature increetse is more justified than the assumption that it is ~n~~p~n~~n~ of temperature.

38

T

(Kf 350

so0

Temperature

Fig. 4. RNase

and Mb when

or constant (ref. 5). Another

their

peculiarity

temperature assume

TR,

to be decreasinu

follows

temperature

$H=O.

from equations

9 and

line)

increases

10 is

become

zero and then change

A$%=GI must

Indeed,

always

for simplicity

exceed let us

which is not very ADC R P' in the vicinity of TS and TR, does

approximation

to the temperature

that

In this case

not depend% on temperature.

(solid

of

decrease upon temperature

TS, at which

at which

functions

line) as the temperature

functions

Temperature

in the first

sensitive

that

and A$

and at some

sign.

of the Aili and A$

is assumed

A$P

(dotted-and-dashed

that both the A$ decrease

dependence

400

from equations

9 and

10

we have: A+(T)

= A;H(TG)

A;SIT)

= fAzH(TGkl/TG

Thus

A@Tl

- (T-T

G

I Ilf

,ADC Np'

+ ep

(12)

In T/TG.

for AiG(T),

= A;H(Tl - TA;SiT)

= UTG-T)tTGlA$TGl

+ jT ADC (T)dT - T.fT A$Zp(Ttdtln RP

TG

TG

T)

39 U ({TG-TJ/TGIAiH(TGl + [T-TGl$Cp

-

TA$

In (TO/T,.

$13)

Then D D TH p1TG - iANH(TGWANCpr TS r TG/IiA~WtTG)i/t~&pTG,

2 + 1t = TG/(ZTG-TW),

and for the difference of these values D D Tg: - TH = USjH(TGW(ANCpTCt

2 TG,

(16)

which is always positive (ref. 6). The temperature shift of the enthalpp and entropy functions is very important for stabilization of the native Protein structure,

500

250 0

._.W.--.

-2Jo -500

Fib?.

5.

0

5a

Temperature dependence of the AgG function of RNase and

?lb when A?C is assumed to be decreasing (solid linef or constant ."P (dotted-and-dashed line) as the temperature increases (ref. 51. Stability of pratein is usually expressed in the Gibbs energy values, since A$Z is the work required for disruption of the native protein structure. estremum of A$

As can be seen from Fig. 5, the

iequation 13) is not very sensitive to the ADC HP dependence on temperature. The maximum A:0 is reached when

40

i.e. at most

temperature

stable

the native

Ts.

and denatured

only by the enthalpy .4t temperatures

should

state

temperature observed,

cold

that while

proceeds

should

with

decrease,

that

below

of

(ref. 3). decrease

and,

of the native

zero stability

of the

temperatures,

at high

of protein

is

T&,

the breakdown feature

proceeds

of the enthalpy

a release

since

the stability

also cause

heat denaturation increase

is

difference

should

the heat denaturation

The distinguishing

of protein

states A$

at two difference

TG, at which

structure.

TS,

therefore,

and a low temperature

at which

thus with

of these

and below decrease

is reached

state

the entropy

is zero, and it is stabilized

difference

One can expect,

native

the native where

states

above

correspondingly, state.

Thus,

at the temperature

of heat,

of the native

of these with

two processes

heat

absorption

and entropy,

i.e. with

T s and TN both

cold

enthalpy

these

functions

is

and

denaturation and entropy change

their

sign. Cold denaturation themodynamic expect

a priori

structure increase

that

could

crucial

test

of cold

proposed

phenomena

predicted

values

below

release

point

upon cooling solutions

various

experimental

under

phenomena

direct

However,

of protein

below

It has been

different

was

of

task,

proteins

denaturation

as

a

the since

were

far

with

heat

the

by supercoolins

O°C and studying

including shown

solvent

regarded

thermodynamic

observation

achieved

techniques,

in an

experimental

solutions.

of protein

was recently

native

experimental

of aqueous

the

one can hardly

i.e.

Therefore

of the protein

was a complicated

aqueous

proteins

denaturation

demonstration

microcalorimetry.

decrease,

of Th for all the studied

the freezing

The direct

from

since

of the ordered

in an entropy

above.

follows

paradoxal,

of the system.

for the correctness

presented

which

appears

the breakdown

result

in the order

demonstration

theory

of pro&ins,

formalism,

for a number

conditions

them by

scanning of globular

lmyoFflobin (ref. 61,

41

apomyonlobin (ref. 7) and staphylococcal

nuclease

(ref. 811 that

upon coolinn, the compact protein structure unfolds, releasing heat (Fig. 61, This process is highly reversible; if the cooled protein solution is heated, the protein folds back, absorbinu the beat.

Ali

the studied

cases

IFirc.

71

are satisfactorily

described by the thermodynamic equations presented above, which confirms that the denaturation of a single-domain protein can be regarded

in

good approximation as a transition between the two

macroscopic states, rihich differ significantly in their heat capacity.,

-IO

IO

Jo

50

70

T SC, Fig, 6, The heat effect observed upon eoolina and heating of apomyo~fobin solution (ref. 7).

subsequent

One of the most general characteristics of protein denaturation is the heat capacity increment, which is the same upon heat, cold, acid, or guanidinium chloride (GuHClf denaturation and is specific for a rtiven protein.

As for the

entbalpy and entropy of denaturation, they can be positive, negative, and even zero, depending on temperature.

However, it is most surprisina that at hiah temperatures the specific values

of these functions are similar for all globular proteins studied, What do the asymptotic values of the denaturation enthalpy and entropy mean and why are they apparently universal for very different proteins? Why should the denaturation enthalpy and entropy depend so much on temperature and consequently have negative values at low temperature?

42

20

0

40

60

80

T (t) Fig, 7. The temperature dependence of the partial heat capacities of metrn~o~~ob~n fMb1 (ref. 61, aponyoalobin fa%b! (ref. 7!, and staphylococcal nucfease (Nase) (ref. 8) in solutions with different pH values. Since neaa$ive

entropy

is a measure of disorder in R system9 the

entropy of denaturation might only mean that at low

temperature the native state is less ordered than the denatured one, notwithstanding the much higher order in the arrangement. of the polypeptide chain in the native protein.

This paradox can be

resolved if one takes into account that the partial entropy of 8 protein molecule in solution is determined not only by its conformation, but also by the state of the solvent in the vicinity of the protein. Dissolution of a nonpolar molecule in water leads to a decrease in the entropy of the system owing to ordering of the water molecule3, while a decrease in this order with :emperature aives the safution

excess

beat capacity.

It is assumed that

unfolding of the compact protein structure with the exposure of internal nonpolar droups ordering

of water

to water

molecules:

should also lead to the

the extent

of this ordering

should

43 decrease with increasing temperature.

An extra energy

expenditure upon the gradual "meltintf" of water ordered by the exposure of nonpolar groups of the unfolded protein is indeed the only reasonable explanation for most of the denaturation heat capacity increments observed upon a temperature increase (ref. 6). On the other hand, if the observed heat capacity increment of denaturat~o~ is caused mainly by melting water ordered by exposed nonpolar groups of protein, one would expect that the influence of these groups on the surrounding water should vanish at some temperature TO. I propose that this should be the temperature at which the specific enthalpies and entropies of denaturation of various proteins become equal, which is about 14GoC according to recent calorimetric studies.

This suggestion was confirmed by

the finding that at about the same temperature the entropy of transfer of various nonpolar substances from the liquid phase to water becomes zero, i.e. these substances no longer affect the order of the water {ref. 61. If one neglects the dependence of the denaturat~on heat capacity increment on temperature, then T G decreases to about llO°C (Pi!?. 4).

This modification does not notably affect the

AiG function fFig, 3).

Therefore, considering protein stability,

in the first approximation one can neglect the temperature dependence of hiCp

and present the A$

and AiS functions in the

folloKinft way: = A+TGI

- IT,-TtA% N p'

1191

A;S(T) = A;S(TGI - fin tTG/T)lA$2p

Here A~H~T~~ and $SITOk

are temperature -independent parts of the enthalpg and entropy of protein denaturatlon that do not include

the effects of water ordering by the protein's nonpolar Ltroups. Then, for the Gibbs energy of stabilization of the native protein structure we have:

44 A;G(TI

= A;HIT) - TA;StT)

In this expression, only the first term is positive, i.e. the enthslpy of protein unfolding in the absence of water salvation effects from the protein's non-polar groups.

This term

represents the temperature-independent contribution of van der Waals and hydrogen bonds in the stabilization of the protein's compact structure.

The second term, which is negative and

increases with temperature, represents the disordering action of dissipative forces.

The third term merely expresses the

contribution of water soivation by nonpolar groups in the stabilization of the protein's native structure.

The most

remarkable feature of this term is that it is negative and that its value decreases to zero a? the temperature increases to TO (Fig. 81.

Therefore at all temperatures below TO, water

salvation by protein nonpolar Ffroups leads to a decrease in the stability of the native compact state; stability is maintained only by the enthalpic interactions, i.e. by van der Waals and hydrogen bonding. This conclusion disagrees with the widespread opinion that water salvation by nonpolar groups is responsible for the hydrophobicity of these groups and for the stability of the compact state of a protein molecule.

Hydrophobic interactions

are usually taken to include, in fact, not onfy the effect of the hydration of nonpolar groups, but also the van der Waals interaction between these groups, which is far from neafisible, contrary to what was previously supposed (for details see ref. 6).

It is important that these two effects are of opposite sign

and of a different range; the van der Waals interaction is short-range, while the hydration effect is long-range. Therefore, the hydrophobic interaction should be attractive at short distances and repulsive at long distances (exceedins the size of a water molecule).

This might be one

of the reasons for

the extreme cooperativity of a tightly packed native domain. Et is remarkable that for a31 proteins studied the value of the A$2 function determining the stability of the native state does not exceed 50 kJ,mof-'(ref. 3).

Since the cooperative

domain usually includes about 100 amino acid residues, it appears

that the contribution of each of the residues in stab~~i~at~o~ of tke native structure does not exceed 500 S per mole sf residue,

FiR”

8.

Contributions of the dissipative forces TAS(TOI and the

wetel: salvation effect ~A~~~~~~T~-T~/TI' Lhe

native

This

state

is five

value

motion at ordered

of

~hbulas

times

protein

less

temperature.

room

native structwe

than Lt

to

fsef.

that

follows

of that

the

stabilization

of

6).

the

energy

protein

of kharmaX ha3

an

onfy because protein is a c~a~erat~~?e

system whose oom~o~e~ts can change their state o&y Zn other words, the stability

cooperatively. deterntined

the system,

by

an

inte~rai

of

m-w+

a

srstem

contribution of all the com~~~e~ts of

The stability af a c~~p~rat~ve domain exceeds bp

almost 20 times the energy of thermal motion; this st;abilitp is quite sufficient ta ensure the existence of the ordered structure of the domain,

Et is this requirement for stability

that seema to determine the lawer limit of the size of the eo~~~~~t~~~e unit:

The must include

ressfdues to be stable amu&

at

least

50 amincl acid

at pb~~s~c~c~~ca~ temperature,

is

46

dissipative

action

cooperation

of these

A% present

of thermal

we know

of the intrazaoiecular

motion,

fittfe

about

interactions

cooperativity

when

all the elements

into a single

unit

seems

tight

and unique

eooperativity looks

interlacing groups

packing

of cooperation Extreme

of the system

to be achieved

of all the short-

only

can provide

and long-range

chain

that

are integrated

in molecules

In other

words,

of the aperiodic

such a structure

in the polypeptide

the mechanism in proteins.

of groups.

is a peculiarity

as if only

but in the effective

interactions.

with

extreme

structure.

It

the complex interactians

is necessary

between

for their

cooperation.

REFEHENCES 1

2

3 4

5

6

7

3

P.L. Privalov and V.V. Plotnikov, Three generations of scanning microcaforimeters; Thermochim, Acta, 139 (1988) 267-277. P.L. Privalov and N.N. Khechinashvili, Thermodynamic approach to the problem of stabilization of globular protein structure, J, Mol. Biol., 86 tl9741 666-684. P.L. Privafov, Stability of proteins. Small globular Advances in Protein Chemistry, 33 (1979) 167-241. proteins, P.L. Privalov, E.I. Tiktopulo, S.Yu. Venyaminov, Yu.V. Griko, G.I, Makhatadze and N.N. Rhechinashvili, Heat capacitp'and conformation of proteins in the denatured state, J. Mol. Biol., 205 (1989) 737-750. P.L. Prisalov and S.J. Gill, _IStability of protein structure and hydrophobic interaction, Advances in Protein Chemistry, 39 (1988) 191-234, P.L. Privalov, Yu.V. Griko, S.Yu. Venyaminov and V,P, Kutyshenko, Cold denaturation of myoglobin, J. Mol. Biol., 190 (1986) 487-498. Yu.V. Griko, P,L, Prisalov, S.Yu. Venyaatinov and S.P. Kutyshenko, Thermodynamic study of the apozayoglobin structure, J. ?lol. Biol,, 202 119881 X27-138. Yu.V, Griko, P.L. Privalov, J.M. Sturtevant and S.Yu. Venyaminov, Cold denaturation of staphylococcal nuclease, Proc, Natl. Acad. Sci. USA, 85 (1988) 3343-3347.