Updates of the Precision Medicine Program in Gynecologic Oncology

Updates of the Precision Medicine Program in Gynecologic Oncology

Abstracts / Gynecologic Oncology 143 (2016) 194–223 Complete Pathologic Response at Interval Debulking Surgery Following Neoadjuvant Chemotherapy Pre...

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Abstracts / Gynecologic Oncology 143 (2016) 194–223

Complete Pathologic Response at Interval Debulking Surgery Following Neoadjuvant Chemotherapy Predicts Improved Survival in Women with Advanced Epithelial Ovarian Cancer in a Multi-institutional Cohort M. Lianga,b, E. Prendergasta,b, J. Staplesa, C. Holschneiderb, I. Cassa. a Cedars-Sinai Medical Center, Los Angeles, CA, bUniversity of California Los Angeles - Olive View Medical Center, Sylmar, CA Objectives: We sought to determine if pathologic response at the time of interval debulking surgery (IDS) predicts survival in patients undergoing neoadjuvant chemotherapy (NACT) for advanced epithelial ovarian cancer (EOC). Methods: We retrospectively evaluated 57 consecutive EOC patients treated with NACT followed by IDS. Pathologic response was classified as complete with no residual disease (cPR), microscopic (microPR), or macroscopic (macroPR) at the time of IDS. The surgeon’s assessment of residual disease volume after IDS was categorized as resection to no gross residual (R0), optimal (b1 cm), or suboptimal (≥1 cm). Kaplan-Meier analysis was performed to compare progression-free (PFS) and overall survival (OS) between pathologic response groups and based upon cytoreductive status (R0 vs. any residual disease). Results: Patients were triaged to NACT for stage IV disease (n = 31, 54%), radiologically bulky disease deemed not amenable to optimal cytoreduction (n = 32, 56%), venous thromboembolism (n = 4, 7%), and poor performance status (n = 4, 7%). No baseline differences were observed between groups including age, stage, grade, and histology. Median number of NACT cycles was 3 (range, 1–6). cPR was observed in 6 (11%), microPR in 10 (17%), and macroPR in 41 (72%) patients. cPR was associated with improved median PFS compared to any residual disease (micro PR/macro PR) (undefined vs. 11 months, p = 0.02). There was no difference in median OS between patients with cPR and those with any residual disease (undefined vs. 37 months, p = 0.36). A difference in PFS was not observed between microPR and macroPR disease (11 vs. 11 months, p = 0.54). After IDS, 35 (61%) patients underwent R0, 18 (32%) optimal, and 4 (7%) suboptimal cytoreduction. There were no survival differences between patients with R0 resection compared to any residual disease at IDS (PFS 22 vs. 10 months, p = 0.10; OS undefined vs. 35 months, p = 0.27). Stage, grade, and normalization of CA-125 prior to IDS did not affect survival. Conclusion: In our cohort, cPR in patients with advanced EOC undergoing NACT is uncommon (~10% of cases), but appears to be associated with improved PFS. NACT led to R0 cytoreduction in approximately two-thirds of patients at IDS, but this demonstrated no impact on survival.

doi:10.1016/j.ygyno.2016.08.247

Ubiquitin-Specific Protease 14 is a Biomarker for Recurrence in Early-Stage Endometrial Adenocarcinoma and Potential Therapeutic Target T. Pulver, W. Heilmann, J. Richter, M. Shahi, R. Vogel, R. Ghebre, M. Bazzaro. University of Minnesota, Minneapolis, MN Objectives: A subset of early-stage, low-risk endometrial adenocarcinoma (EAC) goes on to recur for reasons that remain unclear. The purpose of this study was to evaluate the debubiquinating enzyme ubiquitin-specific protease 14 (USP14) as a biomarker for recurrence in stage I EAC as well as a potential therapeutic target. Methods: To determine the relationship between USP14 and recurrence, consecutive cases of stage I EAC at a single academic institution were reviewed. Formalin-fixed, paraffin-embedded slides from primary tumors of cases for which at least 36 months of follow-up were

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available were stained with a polyclonal antibody specific for USP14. A comparison of staining intensity and recurrence was conducted using a multivariate logistic regression model. Primary tumors were additionally stained for Ki-67. Nuclear positivity for Ki67 in areas corresponding to low and high intensity staining for USP14 was quantified and compared. To evaluate USP14 as a potential molecular target for EAC treatment, the EAC cell lines HEC155 and ECC1 were exposed to the USP14 inhibitor VLX-1570 and subjected to a cell viability assay, Western blot analysis, and flow cytometry. Treatment of the cells with carboplatin was used for comparison. Results: A total of 203 cases were included in the IHC portion of the study, of which 12.4% recurred within 36 months. After accounting for other known risk factors for recurrence, namely grade and stage, higher USP14 staining intensity was associated with increased risk of recurrence (p=0.001). A 1-point increase in staining intensity corresponded to a 6.9-fold increase in risk of recurrence (OR = 6.9; 95% CI: 1.6-27.3). Nuclear positivity for Ki67 demonstrated a strong correlation with USP14 intensity by IHC. EAC cell lines exposed to VLX-1570 demonstrated dose-dependent inhibition of cell viability and accumulation of poly-ubiquinated proteins. USP14 inhibition was also found to induce G2-M cell cycle arrest and apoptosis. Conclusion: High expression of USP14 by IHC is associated with an increased likelihood of recurrence among women with stage I EAC, independent of other known risk factors for recurrence. Our results additionally suggest that USP14 inhibition may have a potential therapeutic effect. Further investigation using preclinical models is warranted.

doi:10.1016/j.ygyno.2016.08.248

Updates of the Precision Medicine Program in Gynecologic Oncology Erin E. Brown, Michelle R. Rowland, Kathleen N. Moore, Camille C. Gunderson. University of Oklahoma Health Sciences Center Objectives: The aim of this study was to build upon a previously initiated Precision Medicine project encompassing patients with metastatic or recurrent gynecologic malignancies who were screened for somatic mutations. We sought to obtain patterns of genomic alterations, identify targeted therapies utilized, and analyze associated outcomes. Methods: In 2014, a multi-disciplinary Precision Medicine Board was initiated at our institution in order to apply molecular genetic profiling to high-risk or recalcitrant gynecologic malignancies. The profiles were obtained by sending archival or fresh tumor samples for sequencing at a CLIA approved laboratory. The panel screens for 315 cancer-related genes and reports identified known and potential “matched” therapies. A detailed database was assembled to follow each patient prospectively for treatment use and resultant outcomes. Results: To date, 88 patients have undergone testing (43 ovary, 27 uterine, 12 cervix, and 6 other female genital tract) with mean age of 55.4 years (17-77 years). Fifty-two primary tumors were tested, and 36 were recurrent. Two patients were not included in the analysis due to sample failure. Significant genomic alterations were found in all tumor types, with the most common mutations being TP53 (50.0%), PIK3CA (25.5%) and ARID1A (15.1%). Organized by family, there were 78 DNA repair mutations (TP53, CHK1/2, CDK, BRCA1/2, CCN), 43 PTEN/PIK3/mTOR pathway mutations, 20 KRAS/ AKT/NF1 mutations, 14 ARID1A, and 10 MYC (transcription factor) mutations. Sixty-two patients (72.1%) had a potential matched therapy (approved drug or clinical trial available at our institution) based upon their profiling, and 16 (18.6%) received a matched therapy. When assessing best response, 6 patients on matched therapy had stable disease, 1 had a partial response, and 1 had progressive disease. Four patients had non-assessable response due to toxicities or death. Four

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Abstracts / Gynecologic Oncology 143 (2016) 194–223

patients are receiving matched therapies with unconfirmed responses to date. Conclusion: Targeting recognized alterations in tumor growth pathways remains an exploratory approach in the treatment of recalcitrant malignancies but data available to date is encouraging. Our results demonstrate that application of matched therapies to gynecologic cancers may be more feasible than previously thought, and our observed outcomes are promising thus far in this incurable population. doi:10.1016/j.ygyno.2016.08.249

Overall Survival of Women with Locally Advanced Cervical Cancer (STAGE IIb-IVa) is Adversely Affected by Treatment Delays Measureable in Days E. Trudeau, R. Regn, W. Robinson IV, W.R. Robinson. Tulane University School of Medicine, New Orleans, LA Objectives: The survival of women with locally advanced cervical cancer (Stages IIb-IVa) varies widely in the U.S., particularly in innercity populations, where ethnic and socioeconomic factors may play a role. This report will examine multiple factors that may influence survival in these women. Specifically, to determine if these factors, including treatment delays, can be quantitatively associated with survival. Methods: 471 women diagnosed with locally advanced cervical cancer (Stages IIb-IVa) were identified between 2000-2012 at a large, inner-city, academic institution. Data collected included age, ethnicity, stage, histology, time from last Pap smear, years since the patient had last seen a physician, insurance status, and time from diagnosis to the start of treatment, and Progression Free and Overall survival (PFS and OS). Multiple regression analyses were used to make quantitative associations between these factors and length of survival. Results: Age, ethnicity, time from last Pap smear, total treatment time, and years since the patient had last seen a physician did not significantly impact PFS or OS. Multiple regression analysis revealed that time from diagnosis to treatment was a significant variable when multiplied by all stages included in this data set (IIb, IIIa, IIIb, IVa). The average length of time from diagnosis of cancer to the beginning of radiation for all subjects was 30.5 days (median 31 days, range 17-67). Specifically, in subjects with stage IIb, survival expectancy decreased by 1.05 months (31.5 days) for every extra day until start of treatment. Subjects with stage IIb who started treatment 30.5 days after diagnosis (the average in this population) survived 56.7 weeks (CI 95%, 26.8 to 86.7). In contrast, subjects with stage IIb who started treatment 14 days after diagnosis, live an average of 74.1 weeks (CI 95%, 44.1 to 104.0). Subjects with stage IVa will lose 1.2 months (36 days) for each day between diagnosis and treatment. Subjects with Stage IVA subjects who waits the average 30.5 days live 29.8 weeks (CI 95%, 0.0 to 59.8), whereas those who begin treatment 14 days after diagnosis would be expected to live an average of 49.7 weeks (CI 95%, 19.7 to 79.6). Conclusion: Aside from stage, the length of time from diagnosis to the beginning of treatment with radiation therapy was the only factor analyzed in this data that could be associated with survival. Decreasing the length of time between diagnosis and treatment would significantly improve the survival of subjects in this population with locally advanced cervical cancer. In contrast to other factors (age, ethnicity, previous compliance, etc), the time required to commence radiation therapy is under the control of Heath Care providers. Every step (insurance verification, scheduling of imaging studies) should be critically evaluated to streamline this process and improve survival. doi:10.1016/j.ygyno.2016.08.250

Exploring Associations Between Tumor Derived B-cell and T-cell Infiltration Gene Signatures and Clinicopathologic Features in Endometrioid Endometrial Carcinoma E. Clair McClunga, Anders Berglundb, Eric Welshc, Yin Xiongd, Sharon Robertsona, Bernadette Boacd, Hye Sook Chona, Anthony Maglioccoa,d,e, Douglas Marchiona,d. aDepartment of Women’s Oncology, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, bDepartment of Biostatistics and Bioinformatics, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, cBioinformatics Core, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, dChemical Biology and Molecular Medicine, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, eDepartment of Oncologic Sciences, Department of Anatomic Pathology, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL Objectives: Endometrial cancer has been proposed as a candidate for immunotherapy due to the concentration of neoantigens in hypermutated molecular subtypes; however, data linking immune activity to clinical outcomes are currently limited. We present two gene expression signatures that score predicted differential B-cell and T-cell infiltration in endometrioid endometrial carcinoma, and we evaluate correlations with pathologic features and clinical outcomes. Methods: We analyzed microarray gene expression data for 389 endometrioid endometrial adenocarcinomas collected from 12 institutions from 1998-2012. We reviewed sample collection data, pathology reports, and patient medical records to confirm that all included samples were collected from primary endometrioid endometrial carcinomas. Clinical data were obtained by retrospective review of medical records. Co-expression analysis and the PANTHER GO biological processes experimental tool were used to develop signatures for B-cell and T-cell immune infiltration. Tumor samples were labeled according to relative enrichment for immune-related genes using PCA modeling. We correlated sample PC1 scores with clinicopathologic features. Outcome data were evaluated in a subset of 175 tumors with complete follow up data, derived from a single institution. Results: The B-cell infiltration signature was enriched for CD27, immunoglobulin components and immunoglobulin associated proteins, whereas the T-cell mediated signature included CD2, CD3D, CD3E, CD8A, CD8B, MS4A1, and CTLA4 among others. Differential Bcell and T-cell mediated PC1 scores were not associated with grade, tumor size, stage, lymphovascular space invasion, or age at diagnosis. Low T-cell mediated PC1 scores were associated with development of recurrence (p=.03595), and there was a non-significant trend toward reduced recurrence free survival (p=0.11), with median follow up of 33.3 months. Conclusion: Differential expression of markers of immune activation was not associated with high-risk pathologic features of endometrioid endometrial carcinoma; however, low T-cell infiltration scores were associated with development of recurrence. T-cell infiltration may risk-stratify endometrial cancers independent of other clinicopathologic features. With pathologic validation, a T-cell infiltration gene expression signature may provide another tool for identifying patients who will benefit from therapies targeting cellmediated immunity.

doi:10.1016/j.ygyno.2016.08.251

The Effect of Treatment for Gynecologic Cancers on a Woman’s Sexual Function A.R. Carrubba, E.A. Blake, M. Moroney, D.M. Flink, G. Whitmore, J. Sheeder, S. Guntupalli. University of Colorado, Denver, CO Objectives: Sexual dysfunction is a significant survivorship issue in women with gynecologic cancer and may be affected by a variety