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Geochemistry articles – January 2006
Organic Geochemistry Organic Geochemistry 37 (2006) I–XVIII www.elsevier.com/locate/orggeochem
GEOCHEMISTRY ARTICLES – January 2006 Analytical Chemistry Applications de la chromatographie bidimensionnelle a l’analyse de derives soufres dans les gazoles Bertoncini, F., Guerrero, M.-R., Vendeuvre, C., Espinat, D., Thiebaut, D., 2005. Spectra Analyse 34, 32–37. Apport de la chromatographie en phase gazeuse bidimensionnelle pour la caracterisation de matrices complexes Bertoncini, F., Vendeuvre, C., Espinat, D., Thiebaut, D., 2005. Spectra Analyse 34, 26–31. Nouvelles opportunites pour caracteriser les sources de pollution marine par GCxGC Bertoncini, F., Vendeuvre, C., Haeseler, F., Espinat, D., Thiebaut, D., 2005. Spectra Analyse 34, 38–43. Accurate mass measurement for the determination of elemental formula – A tutorial Bristow, A.W.T., 2006. Mass Spectrometry Reviews 25, 99–111. Statistical evaluation of an analytical GC/MS method for the determination of long chain fatty acids Campo, P., Sorial, G.A., Suidan, M.T., Venosa, A.D., 2006. Talanta 68, 888–894. Simultaneous derivatization and extraction of primary amines in river water with dynamic hollow fiber liquid– phase microextraction followed by gas chromatography–mass spectrometric detection Chia, K.-J., Huang, S.-D., 2006. Journal of Chromatography A 1103, 158–161. Application of enhanced large volume injection; an approach to the analysis of petroleum hydrocarbons in water Dellavedova, P., Vitelli, M., Ferraro, V., Toro, M., Santoro, M., 2006. Chromatographia 63, 73–76. Detection limits of matrix-assisted laser desorption/ionisation mass spectrometry coupled to chromatography – a new application of solvent-free sample preparation Falkenhagen, J., Weidner, S.M., 2005. Rapid Communications in Mass Spectrometry 19, 3724–3730. Separation of molecular constituents from a humic acid by solid-phase extraction following a transesterification reaction Fiorentino, G., Spaccini, R., Piccolo, A., 2006. Talanta 68, 1135–1142. Comparison of comprehensive two-dimensional gas chromatography in conventional and stop-flow modes Harynuk, J., Go´recki, T., 2006. Journal of Chromatography A 1105, 159–167. Development of a removable multi-column-switching system for gas chromatography Hinz, D.C., 2006. Journal of Chromatography A 1105, 87–94. Selective ion filtering by digital thresholding: a method to unwind complex ESI-mass spectra and eliminate signals from low molecular weight chemical noise Hofstadler, S.A., Drader, J.J., Schink, A., 2006. Analytical Chemistry 78, 372–378. Comparative visualization for comprehensive two-dimensional gas chromatography Hollingsworth, B.V., Reichenbach, S.E., Tao, Q., Visvanathan, A., 2006. Journal of Chromatography A 1105, 51–58. doi:10.1016/j.orggeochem.2006.01.010
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Geochemistry Articles / Organic Geochemistry 37 (2006) I–XVIII
Prediction of gas chromatographic peak width in capillary columns at different temperatures, carrier gas flows, column lengths, inside diameters and carbon numbers Krisnangkura, K., Pongtonkulpanich, V., 2006. Journal of Separation Science 29, 81–89. Resolution of 13 polycyclic aromatic hydrocarbons by constant-wavelength synchronous spectrofluorometry Lage–Yusty, M.A., Lo´pez-Gonza´lez, J., Simal-Lozano, J., 2005. Analytical Science 21, 1203–1212. Twenty years of evaporative light scattering detection Megoulas, N., Koupparis, M., 2005. Critical Reviews in Analytical Chemistry 35, 301–316. Validation of a one-step extraction/methylation method for determination of fatty acids and cholesterol in marine tissues Meier, S., Mjos, S.A., Joensen, H., Grahl-Nielsen, O., 2006. Journal of Chromatography A 1104, 291–298. Characterising high mass materials in heavy oil fractions by size exclusion chromatography and MALDI-mass spectrometry Millan, M., Behrouzi, M., Karaca, F., Morgan, T.J., Herod, A.A., Kandiyoti, R., 2005. Catalysis Today 109, 154–161. Fast enantiomeric analysis of a complex essential oil with an innovative multidimensional gas chromatographic system Mondello, L., Casilli, A., Tranchida, P.Q., Furukawa, M., Komori, K., Miseki, K., Dugo, P., Dugo, G., 2006. Journal of Chromatography A 1105, 11–16. Development of two-dimensional gas chromatography/isotope ratio mass spectrometry for the stable carbon isotopic analysis of C2–C5 non-methane hydrocarbons emitted from biomass burning Nara, H., Nakagawa, F., Yoshida, N., 2006. Rapid Communications in Mass Spectrometry 20, 241–247. A new hybrid electrospray Fourier transform mass spectrometer: design and performance characteristics O’Connor, P.B., Pittman, J.L., Thomson, B.A., Budnik, B.A., Cournoyer, J.C., Jebanathirajah, J., Lin, C., Moyer, S., Zhao, C., 2006. Rapid Communications in Mass Spectrometry 20, 259–266. Flow-through system for the generation of standard aqueous solution of polycyclic aromatic hydrocarbons Ouyang, G., Chen, Y., Pawliszyn, J., 2006. Journal of Chromatography A 1105, 176–179. Theory and use of the pseudophase model in gas–liquid chromatographic enantiomeric separations Pino, V., Lantz, A.W., Anderson, J.L., Berthod, A., Armstrong, D.W., 2006. Analytical Chemistry 78, 113–119. Short metal capillary columns packed with polymer-coated fibrous materials in high-temperature gas chromatography Saito, Y., Ogawa, M., Imaizumi, M., Ban, K., Abe, A., Takeichi, T., Wada, H., Jinno, K., 2005. Journal of Chromatographic Science 43, 536–541. Determination of polycyclic aromatic hydrocarbons (PAHs) in marine, brackish, and river sediments by HPLC, following ultrasonic extraction Sarrazin, L., Diana, C., Wafo, E., Pichard-Lagadec, V., Schembri, T., Monod, J.-L., 2006. Journal of Liquid Chromatography and Related Technologies 29, 69–85. Continuous microwave-assisted extraction coupled on-line with liquid–liquid extraction: Determination of aliphatic hydrocarbons in soil and sediments Serrano, A., Gallego, M., 2006. Journal of Chromatography A 1104, 323–330. Optimization and validation of HPLC–UV–DAD and HPLC–APCI–MS methodologies for the determination of selected PAHs in water samples Titato, G.M., Lanc¸as, F.M., 2006. Journal of Chromatographic Science 44, 35–40.
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Zeolites and zeolite-based materials in analytical chemistry Valde´s, M.G.M., Pe´rez-Cordoves, A.I., Diaz-Garcia, M.E., 2006. TrAC Trends in Analytical Chemistry 25, 24–30. Applications of comprehensive two-dimensional gas chromatography to the characterization of petrochemical and related samples von Mu¨hlen, C., Zini, C.A., Carama˜oa, E.B., Marriott, P.J., 2006. Journal of Chromatography A 1105, 39– 50. Universal acoustic flame detection for modified supercritial fluid chromatography Xia, Z., Thurbide, K.B., 2006. Journal of Chromatography A 1105, 180–185. Performance of a mass analyzer with orbital trapping for peptide analysis Yates, J.R., Cociorva, D., Liao, L., Zabrouskov, V., 2006. Analytical Chemistry 78, 493–500. Detecting and aligning peaks in mass spectrometry data with applications to MALDI Yu, W., Wu, B., Lin, N., Stone, K., Williams, K., Zhao, H., 2006. Computational Biology and Chemistry 30, 27–38. Standardizing the novel method for chemical fingerprinting of oil and petroleum products based on positive electrospray mass spectrometry and chemometrics Zahlsen, K., Eide, I., 2006. Energy & Fuels 20, 265–270. Effect of first-dimension column film thickness on comprehensive two-dimensional gas chromatographic separation Zhu, Z., Harynuk, J., Gorecki, T., 2006. Journal of Chromatography A 1105, 17–24.
Archaeological/Art Organic Chemistry Stable isotope evidence for palaeodiets in southern Turkmenistan during Historical period and Iron Age Bocherens, H., Mashkour, M., Drucker, D.G., Moussa, I., Billiou, D., 2006. Journal of Archaeological Science 33, 253–264. Modern and fossil charcoal: aspects of structure and diagenesis Cohen-Ofri, I., Weiner, L., Boaretto, E., Mintz, G., Weiner, S., 2006. Journal of Archaeological Science 33, 428–439. Organic geochemical evidence for pine tar production in Middle Eastern Sweden during the Roman Iron Age Hjulstro¨m, B., Isaksson, S., Hennius, A., 2006. Journal of Archaeological Science 33, 283–294. Coal geochemistry in the service of archaeology Palmer, C.A., Finkelman, R.B., 2006. International Journal of Coal Geology 66, 151–152. Characterization of proteinaceous glues in old paintings by separation of the o-phtalaldehyde derivatives of their amino acids by liquid chromatography with fluorescence detection Peris-Vicente, J., Gimeno Adelantado, J.V., Carbo´, M.T.D., Castro, R.M., Reig, F.B., 2006. Talanta 68, 1648–1654. New faunal analyses and amino acid dating of the Lower Palaeolithic site at East Farm, Barnham, Suffolk Preece, R.C., Penkman, K.E.H., 2005. Proceedings of the Geologists’ Association 116, 363–377. Preparative separation of underivatized amino acids for compound-specific stable isotope analysis and radiocarbon dating of hydrolyzed bone collagen Tripp, J.A., McCullagh, J.S.O., Hedges, R.E.M., 2006. Journal of Separation Science 29, 41–48.
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Astrobiology Key science questions from the Second Conference on Early Mars: Geologic, Hydrologic, and Climatic Evolution and the Implications for Life Beaty, D.W., Clifford, S.M., Borg, L.E., Catling, D.C., Craddock, R.A., Marais, D.J.D., Farmer, J.D., Frey, H.V., Haberle, R.M., Mckay, C.P., Newsom, H.E., Parker, T.J., Segura, T., Tanaka, K.L., 2005. Astrobiology 5, 663–689. A climatic thermostat making Earth habitable Ditlevsen, P.D., 2005. International Journal of Astrobiology 4, 3–7. Bacillus subtilis spores on artificial meteorites survive hypervelocity atmospheric entry: Implications for lithopanspermia Fajardo-Cavazos, P., Link, L., Melosh, H.J., Nicholson, W.L., 2005. Astrobiology 5, 726–736. Photochemical stability of biomolecules in the experiments modelling Martian surface conditions Gontareva, N.B., 2005. International Journal of Astrobiology 4, 93–96. Activity and stability of a complex bacterial soil community under simulated Martian conditions Hansen, A.A., Merrison, J., Bente, P.N., Lomstein, A., Finster, K., 2005. International Journal of Astrobiology 4, 135–144. Some problems related to the origin of methane on Mars Krasnopolsky, V.A., 2006. Icarus 180, 359–367. Biological potential of low-temperature aqueous environments on Mars Link, L.S., Jakosky, B.M., Thyne, G.D., 2005. International Journal of Astrobiology 4, 155–164. The Cyborg Astrobiologist: scouting red beds for uncommon features with geological significance McGuire, P.C., Dı´az-Martı´nez, E., Ormo¨, J., Go´mez-Elvira, J., Rodrı´guez-Manfredi, J.A., Sebastia´nMartı´nez, E., Ritter, H., Haschke, R., Oesker, M., Ontrup, J., 2005. International Journal of Astrobiology 4, 101–113. Adsorption water–related potential chemical and biological processes in the upper Martian surface Mohlmann, D., 2005. Astrobiology 5, 770–777. Extraction of organic signatures from carbonates and evaporites: from mineral deposits to Mars Parnell, J., 2005. Proceedings of the Geologists’ Association 116, 281–291. Thermodynamics of life on the planetary scale Rosing, M.T., 2005. International Journal of Astrobiology 4, 9–11. Venus, Mars, and the ices on Mercury and the Moon: Astrobiological implications and proposed mission designs Schulze-Makuch, D., Dohm, J.M., Faire´n, A.G., Baker, V.R., Fink, W., Strom, R.G., 2005. Astrobiology 5, 778–795. Biosignatures from Earth-like planets around M dwarfs Segura, A., Kasting, J.F., Meadows, V., Cohen, M., Scalo, J., Crisp, D., Butler, R.A.H., Tinetti, G., 2005. Astrobiology 5, 706–725. A search for chiral signatures on Mars Sparks, W.B., Hough, J.H., Bergeron, L.E., 2005. Astrobiology 5, 737–748. Caenorhabditis elegans survives atmospheric breakup of STS-107, Space Shuttle Columbia Szewczyk, N.J., Mancinelli, R.L., McLamb, W., Reed, D., Blumberg, B.S., Conley, C.A., 2005. Astrobiology 5, 690–705.
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Biochemistry How carotenoids function in photosynthetic bacteria Cogdell, R.J., Frank, H.A., 1987. Biochimica et Biophysica Acta – Reviews on Bioenergetics 895, 63–79.
Biodegradation Study of a hexane-degrading consortium in a biofilter and in liquid culture: biodiversity, kinetics and characterization of degrading strains Amouric, A., Verhe´, F., Auria, R., Casalot, L., 2006. FEMS Microbiology Ecology 55, 239–247. Assessment of naphthalene biodegradation efficiency of Pseudomonas and Burkholderia strains tested in soil model systems Filonov, A.E., Puntus, I.F., Karpov, A.V., Kosheleva, I.A., Akhmetov, L.I., Yonge, D.R., Petersen, J.N., Boronin, A.M., 2006. Journal of Chemical Technology & Biotechnology 81, 216–224. PAH degradation capacity of soil microbial communities – Does it depend on PAH exposure? Johnsen, A., Karlson, U., 2005. Microbial Ecology 50, 488–495. Enhanced biodegradation of diesel oil by a newly identified Rhodococcus baikonurensis EN3 in the presence of mycolic acid Lee, M., Kim, M.K., Singleton, I., Goodfellow, M., Lee, S.-T., 2006. Journal of Applied Microbiology 100, 325–333. Culture-dependent and -independent approaches establish the complexity of a PAH-degrading microbial consortium Vin˜as, M., Sabate´, J., Guasp, C., Lalucat, J., Solanas, A.M., 2005. Canadian Journal of Microbiology 51, 897–909. Deep desulfurization of diesel oil and crude oils by a newly isolated Rhodococcus erythropolis strain Yu, B., Xu, P., Shi, Q., Ma, C., 2006. Applied and Environmental Microbiology 72, 54–58. Methanogenic pathway of the Quaternary biogenic gases in the Qaidam Basin, China Zhang, X., Song, C., Qi, Y., Duan, Y., Li, X., Ma, L., Zhang, M., 2005. Geochemical Journal 39, 411–416.
Biodegradation Pathways/Genomics The University of Minnesota Biocatalysis/Biodegradation Database: the first decade Ellis, L.B.M., Roe, D., Wackett, L.P., 2006. Nucleic Acids Research 34, D517–D521. Propane and n-butane oxidation by Pseudomonas putida GPo1 Johnson, E.L., Hyman, M.R., 2006. Applied and Environmental Microbiology 72, 950–952. Methylation is the initial reaction in anaerobic naphthalene degradation by a sulfate-reducing enrichment culture Safinowski, M., Meckenstock, R.U., 2006. Environmental Microbiology 8, 347–352. Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases van Beilen, J.B., Funhoff, E.G., van Loon, A., Just, A., Kaysser, L., Bouza, M., Holtackers, R., Rothlisberger, M., Li, Z., Witholt, B., 2006. Applied and Environmental Microbiology 72, 59–65.
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Biogeochemistry Seismically triggered microbial methane production relating to the Vogtland—NW Bohemia earthquake swarm period 2000, Central Europe Bra¨uer, K., Ka¨mpf, H., Faber, E., Koch, U., Nitzsche, H.-M., Strauch, G., 2005. Geochemical Journal 39, 441–450. Reduction of Prussian Blue by the two iron-reducing microorganisms Geobacter metallireducens and Shewanella alga Jahn, M.K., Haderlein, S.B., Meckenstock, R.U., 2006. Environmental Microbiology 8, 362–367. Microbial activity in biogeochemical gradients – new aspects of research Kappler, A., Emerson, D., Edwards, K., Amend, J.P., Gralnick, J.A., Grathwohl, P., Hoehler, T., Straub, K.L., 2005. Geobiology 3, 229–233. Zero valent iron as an electron-donor for methanogenesis and sulfate reduction in anaerobic sludge Karri, S., Sierra-Alvarez, R., Field, J.A., 2005. Biotechnology and Bioengineering 92, 810–819. Living under an atomic force microscope. An optimized approach for in vivo investigations on surface alterations towards biomineral nucleation on cyanobacterial cells Obst, M., Dittrich, M., 2005. Geobiology 3, 179–193. Image analysis for quantification of bacterial rock weathering Puente, M.E., Rodriguez-Jaramillo, M.C., Li, C.Y., Bashan, Y., 2006. Journal of Microbiological Methods 64, 275–286. Carbon Cycle/Sequestration Benthic bacterial and fungal productivity and carbon turnover in a freshwater marsh Buesing, N., Gessner, M.O., 2006. Applied and Environmental Microbiology 72, 596–605. Investigation of carbon sequestration via induced calcite formation in natural gas well brine Druckenmiller, M.L., Maroto-Valer, M.M., Hill, M., 2006. Energy & Fuels 20, 172–179. Role of river-suspended material in the global carbon cycle ´ . 2006. Geology 34, 49–52. Gislason, S.R., Oelkers, E.H., Snorrason, A Methane emissions from terrestrial plants under aerobic conditions Keppler, F., Hamilton, J.T.G., Braß, M., Ro¨ckmann, T., 2006. Nature 439, 187–191. Learning about the carbon cycle from global budget data Melnikov, N.B., O’Neill, B.C., 2006. Geophysical Research Letters 32, Citation No. L02705. Coal/Peat/Lignite Geochemistry Palaeoenvironmental conditions of the Mavropigi lignites, Ptolemais Basin, Greece: a petrological study Antoniadis, P., Mavridou, E., Papazisimou, S., Christanis, K., Gentzis, T., 2006. Energy Sources 28, 311–327. Petrographic characteristics of the Kardia lignites (Core KT6A-3), Ptolemais Basin (Greece) Antoniadis, P., Mavridou, E., Papazisimou, S., Christanis, K., Gentzis, T., 2006. Energy Sources 28, 373–388. Investigation of high-pressure selective adsorption/desorption behaviour of CO2 and CH4 on coals: An experimental study Busch, A., Gensterblum, Y., Krooss, B.M., Siemons, N., 2006. International Journal of Coal Geology 66, 53–68.
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Humic substances and nitrogen-containing compounds from low rank brown coals Demirbas, A., Kar, Y., Deveci, H., 2006. Energy Sources 28, 341–351. A comparison of primary lignite structure as determined by pyrolysis techniques with chemical characteristics determined by other methods Fei, Y., Giroux, L., Marshall, M., Jackson, W.R., MacPhee, J.A., Charland, J.-P., Chaffee, A.L., 2006. Fuel 85, 998–1003. Comment on and addenda to ‘‘Arsenic in coal: A review’’ by Yudovich and Ketris Huggins, F.E., Huffman, G.P., 2006. International Journal of Coal Geology 66, 148–150. Structural response of coal to drying and pentane sorption Kelemen, S.R., Kwiatek, L.M., Siskin, M., Lee, A.G.K., 2006. Energy & Fuels 20, 205–213. Steric effects on diffusion into bituminous coals Larsen, J.W., Lee, D., 2006. Energy & Fuels 20, 257–261. A review of the timing of coalification in the light of coal seam erosion, clastic dykes and coal clasts Pesˇek, J., Sy´korova´, I., 2006. International Journal of Coal Geology 66, 13–34. Errors in CO2 adsorption measurements caused by coal swelling Romanov, V.N., Goodman, A.L., Larsen, J.W., 2006. Energy & Fuels 20, 415–416. Burial history and thermal maturity assessment of Upper Cretaceous–Lower Tertiary formations in the C ¸ ankIrI Basin, Turkey TokatlI, K., Demirel, I.H., Karayigit, A.I., 2006. International Journal of Coal Geology 66, 35–52. Coal rank distribution and implications for structural and geothermal controls on coalification; case study from the Cevennes Basin, Massif Central, France Wang, H., Zhuang, X., 2006. International Journal of Coal Geology 66, 1–12. A comparative study of experimental maturation of peat, brown coal and subbituminous coal: Implications for coalification Yao, S., Xue, C., Hu, W., Cao, J., Zhang, C., 2006. International Journal of Coal Geology 66, 108–118. Geochemistry and mineralogy of the Cretaceous Wulantuga high-germanium coal deposit in Shengli coal field, Inner Mongolia, Northeastern China Zhuang, X., Querol, X., Alastuey, A., Juan, R., Plana, F., Lopez-Soler, A., Du, G., Martynov, V.V., 2006. International Journal of Coal Geology 66, 119–136. Cosmochemistry Carbonaceous chondrites: tracers of the prebiotic chemical evolution of the Solar System Andersen, A.C., Haack, H., 2005. International Journal of Astrobiology 4, 13–17.
Environmental Geochemistry State of the art in the determination of MTBE in natural waters and soils Atienza, J., Aragon, P., Herrero, M., Puchades, R., Maquieira, A., 2005. Critical Reviews in Analytical Chemistry 35, 317–337. Response to Schwartz’s comments on ‘‘Comparison of mussels and semi-permeable membrane devices as intertidal monitors of polycyclic aromatic hydrocarbons at oil spill sites (Boehm et al., 2005)’’ Boehm, P.D., Page, D.S., Brown, J.S., Neff, J.M., Bence, A.E., 2006. Marine Pollution Bulletin 52, 122.
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Competitive effects of natural organic matter: Parametrization and verification of the three-component adsorption model COMPSORB Ding, L., Marin˜as, B.J., Schideman, L.C., Snoeyink, V.L., Li, Q., 2006. Environmental Science & Technology 40, 350–356. Stochastic analysis of nonlinear biodegradation in regimes controlled by both chromatographic and dispersive mixing Janssen, G.M.C.M., Cirpka, O.A., van der Zee, S.E.A.T.M., 2006. Water Resource Research 42, Citation No. W01417. Stratigraphy of wood-derived sterols in sediments historically contaminated by pulp and paper mill effluents Lahdelma, I., Oikari, A., 2006. Journal of Paleolimnology 35, 323–334. Integration of biodegradation half-life model and oil toxicity model into a diagnostic tool for assessing bioremediation technology Onwurah, l.N.E., Alumanah, E.E., 2005. Industrial Biotechnology 1, 292–296. Conditioning-annealing studies of natural organic matter solids linking irreversible sorption to irreversible structural expansion Sander, M., Lu, Y., Pignatello, J.J., 2006. Environmental Science & Technology 40, 170–178. Comment on ‘‘Comparison of mussels and semi-permeable membrane devices as inter-tidal monitors of polycyclic aromatic hydrocarbons at oil spill sites (Boehm et al., 2005)’’ Schwartz, R.M., 2006. Marine Pollution Bulletin 52, 121. Can microbial mineralization be used to estimate microbial availability of organic contaminants in soil? Semple, K.T., Dew, N.M., Doick, K.J., Rhodes, A.H., 2006. Environmental Pollution 140, 164–172. Effect of bioaugmentation and supplementary carbon sources on degradation of polycyclic aromatic hydrocarbons by a soil-derived culture van Herwijnen, R., Joffe, B., Ryngaert, A., Hausner, M., Springael, D., Govers, H.A.J., Wuertz, S., Parsons, J.R., 2006. FEMS Microbiology Ecology 55, 122–135.
Evolution/Paleontology/Palynology 1.3 Billion years of acritarch history: An empirical morphospace approach Huntley, J.W., Xiao, S., Kowalewski, M., 2006. Precambrian Research 144, 52–68. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA Poinar, H.N., Schwarz, C., Qi, J., Shapiro, B., MacPhee, R.D.E., Buigues, B., Tikhonov, A., Huson, D.H., Tomsho, L.P., Auch, A., Rampp, M., Miller, W., Schuster, S.C., 2006. Science 311, 392–394. Discovery of an ornithurine bird and its implication for Early Cretaceous avian radiation Zhou, Z., Zhang, F., 2005. Proceedings of the National Academy of Sciences USA 102, 18998–19002.
Evolution: Origins of Life/Microbial Genomics Effect of metallic cations on the efficiency of DNA amplification. Implications for nucleic acid replication during early stages of life Arribas, M., de Vicente, A., Arias, A., La´zaro, E., 2005. International Journal of Astrobiology 4, 115–123. Theoretical study of prebiotic precursors: the peptide bond and its silicon, sulphur and phosphorous analogues Chiaramello, J.M., Talbi, D., Berthier, G., Ellinger, Y., 2005. International Journal of Astrobiology 4, 125–133.
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Essential genes of a minimal bacterium Glass, J.I., Assad-Garcia, N., Alperovich, N., Yooseph, S., Lewis, M.R., Maruf, M., Hutchison, C.A., III, Smith, H.O., Venter, J.C., 2006. Proceedings of the National Academy of Sciences USA 103, 425–430. Modelling the dynamics of a minimal protocell container Jacobi, M.N., Steen, R., Tunstrøm, K., 2005. International Journal of Astrobiology 4, 81–91. Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses Khayat, R., Tang, L., Larson, E.T., Lawrence, C.M., Young, M., Johnson, J.E., 2005. Proceedings of the National Academy of Sciences USA 102, 18944–18949. Tidal chain reaction and the origin of replicating biopolymers Lathe, R., 2005. International Journal of Astrobiology 4, 19–31. Relicts and models of the RNA world Lehto, K., Karetnikov, A., 2005. International Journal of Astrobiology 4, 33–41. Prebiotic formation of polyamino acids in molten urea Mita, H., Nomoto, S. Terasaki, M., Shimoyama, A., Yamamoto, Y., 2005. International Journal of Astrobiology 4, 145–154. Spatial dynamics of homochiralization Multama¨ki, T., Brandenburg, A., 2005. International Journal of Astrobiology 4, 75–80. Abiotic synthesis of organic compounds from carbon disulfide under hydrothermal conditions Rushdi, A.I., Simoneit, B.R.T., 2005. Astrobiology 5, 749–769. Chirality in the RNA world and beyond Sandars, P.G.H., 2005. International Journal of Astrobiology 4, 49–61. Hydrogen-based carbon fixation in the earliest known photosynthetic organisms Tice, M.M., Lowe, D.R., 2006. Geology 34, 37–40. Origin of homochirality in biological systems Toxvaerd, S., 2005. International Journal of Astrobiology 4, 43–48. Chiral polymerization and the RNA world Wattis, J.A.D., Coveney, P.V., 2005. International Journal of Astrobiology 4, 63–73. Origins of DNA: Base invaders Whitfield, J., 2006. Nature 439, 130–131 Geology Mineralogy, crystallinity and stable isotopic composition of illitic clays within the Polish Zechstein Basin: implications for the genesis of Kupferschiefer mineralization Bechtel, A., Shieh, Y.-N., Elliott, W.C., Oszczepalski, S., Hoernes, S., 2000. Chemical Geology 163, 189– 205. Lanthanoids, actinoids, and mineral assemblages in bitumen of the Siberian Platform Gottikh, R.P., Pisotsky, B.I., 2005. Doklady Earth Sciences 405, 1209–1216. A cold-sealing capsule design for synthesis of fluid inclusions and other hydrothermal experiments in a pistoncylinder apparatus Hack, A.C., Mavrogenes, J.A., 2006. American Mineralogist 91, 203–210.
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Hydrates Natural gas hydrate dissociation by presence of ethylene glycol Fan, S., Zhang, Y., Tian, G., Liang, D., Li, D., 2006. Energy & Fuels 20, 324–326. Raman spectroscopic measurements of synthetic gas hydrates in the ocean Hester, K.C., White, S.N., Peltzer, E.T., Brewer, P.G., Sloan, E.D., 2006. Marine Chemistry 98, 304–314. Passing gas through the hydrate stability zone at southern Hydrate Ridge, offshore Oregon Liu, X., Flemings, P.B., 2006. Earth and Planetary Science Letters 241, 211–226. Geophysical and geochemical signatures associated with gas hydrate-related venting in the northern Cascadia margin Riedel, M., Novosel, I., Spence, G.D., Hyndman, R.D., Chapman, R.N., Solem, R.C., Lewis, T., 2006. Geological Society of America Bulletin 118, 23–38. Isotope Geochemistry Iron isotope fractionation during microbially stimulated Fe(II) oxidation and Fe(III) precipitation Balci, N., Bullen, T.D., Witte-Lien, K., Shanks, W.C., Motelica, M., Mandernack, K.W., 2006. Geochimica et Cosmochimica Acta 70, 622–639. Temperature and its control of isotope fractionation by a sulfate-reducing bacterium Canfield, D.E., Olesen, C.A., Cox, R.P., 2006. Geochimica et Cosmochimica Acta 70, 548–561. Rapid uplift of the Altiplano revealed through 13C–18O bonds in paleosol carbonates Ghosh, P., Garzione, C.N., Eiler, J.M., 2006. Science 311, 511–515. Cenozoic evolution of the sulfur cycle: Insight from oxygen isotopes in marine sulfate Turchyn, A.V., Schrag, D.P., 2006. Earth and Planetary Science Letters 241, 763–779.
Microbiology/Extremophiles – Microbial Ecology Diversity of naphthalene-degrading bacteria from a petroleum contaminated soil Alquati, C., Papacchini, M., Riccardi, C., Spicaglia, S., Bestetti, G., 2005. Annals of Microbiology 55, 237–242. Cretaceous black shales as active bioreactors: A biogeochemical model for the deep biosphere encountered during ODP Leg 207 (Demerara Rise) Arndt, S., Brumsack, H.-J., Wirtz, K.W., 2006. Geochimica et Cosmochimica Acta 70, 408–425. Isolation and characterization of biosurfactant/bioemulsifier-producing bacteria from petroleum contaminated sites Batista, S.B., Mounteer, A.H., Amorim, F.R., Totola, M.R., 2006. Bioresource Technology 97, 868– 875. Growth and starvation of a strain of Klebsiella pneumoniae isolated from a Brazilian oil formation Bossolan, N.R.S., Godinho, M.J.L., Volpon, A.G.T., 2005. World Journal of Microbiology and Biotechnology 21, 1471–1475. Diversity of microorganisms in Fe–As-rich acid mine drainage waters of Carnoule`s, France Bruneel, O., Duran, R., Casiot, C., Elbaz–Poulichet, F., Personne´, J.-C., 2006. Applied and Environmental Microbiology 72, 551–556. Isolation and characterization of phenanthrene-degrading bacteria from a petroleum refinery soil Coral, G., Karago¨z, S., 2005. Annals of Microbiology 55, 255–260.
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Community genomics among stratified microbial assemblages in the ocean’s interior DeLong, E.F., Preston, C.M., Mincer, T., Rich, V., Hallam, S.J., Frigaard, N.-U., Martinez, A., Sullivan, M.B., Edwards, R., Brito, B.R., Chisholm, S.W., Karl, D.M., 2006. Science 311, 496–503. Applying a most probable number method for enumerating planktonic, dissimilatory, ammonium-producing, nitrate-reducing bacteria in oil field waters Eckford, R.E., Fedorak, P.M., 2005. Canadian Journal of Microbiology 51, 725–729. Spatial variations of methanotrophic consortia at cold methane seeps: implications from a high-resolution molecular and isotopic approach Elvert, M., Hopmans, E.C., Treude, T., Boetius, A., Suess, E., 2005. Geobiology 3, 195–209. Metabolically active Crenarchaeota in Altamira Cave Gonzalez, J., Portillo, M., Saiz-Jimenez, C., 2006. Naturwissenschaften 93, 42–45. Microbial communities in wetlands of the Athabasca oil sands: genetic and metabolic characterization Hadwin, A.K.M., Del Rio, L.F., Pinto, L.J., Painter, M., Routledge, R., Moore, M.M., 2006. FEMS Microbiology Ecology 55, 68–78. Predicting microbial species richness Hong, S.-H., Bunge, J., Jeon, S.-O., Epstein, S.S., 2006. Proceedings of the National Academy of Sciences USA 103, 117–122. Selective phylogenetic analysis targeted at 16S rRNA genes of thermophiles and hyperthermophiles in deepsubsurface geothermal environments Kimura, H., Sugihara, M., Kato, K., Hanada, S., 2006. Applied and Environmental Microbiology 72, 21–27. The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration Knief, C., Kolb, S., Bodelier, P.L.E., Lipski, A., Dunfield, P.F., 2006. Environmental Microbiology 8, 321–333. Soil microbial communities: Influence of geographic location and hydrocarbon pollutants Maila, M.P., Randima, P., Dronen, K., Cloete, T.E., 2006. Soil Biology and Biochemistry 38, 303–310. Microbial biogeography: putting microorganisms on the map Martiny, J.B.H., Bohannan, B.J.M., Brown, J.H., Colwell, R.K., Fuhrman, J.A., Green, J.L., Horner-Devine, M.C., Kane, M., Krumins, J.A., Kuske, C.R., Morin, P.J., Naeem, S., Ovreas, L., Reysenbach, A.-L., Smith, V.H., Staley, J.T., 2006. Nature Reviews Microbiology 4, 102–112. Methanogen communities along a primary succession transect of mire ecosystems Merila¨, P., Galand, P.E., Fritze, H., Tuittila, E.-S., Kukko-oja, K., Laine, J., Yrja¨la¨, K., 2006. FEMS Microbiology Ecology 55, 221–229. Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA Meyer-Dombard, D.R., Shock, E.L., Amend, J.P., 2005. Geobiology 3, 211–227. Effect of inhibition of acetoclastic methanogenesis on growth of archaeal populations in an anoxic model environment Penning, H., Conrad, R., 2006. Applied and Environmental Microbiology 72, 178–184. Use of different methods for detection of thermophilic biosurfactant-producing bacteria from hydrocarbon-contaminated and bioremediated soils Plaza, G.A., Zjawiony, I., Banat, I.M., 2006. Journal of Petroleum Science and Engineering 50, 71–77. Molecular characterization of an oil-degrading cyanobacterial consortium Sa´nchez, O., Diestra, E., Esteve, I., Mas, J., 2005. Microbial Ecology 50, 580–588.
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Microorganisms in the Malan ice core and their relation to climatic and environmental changes Yao, T., Xiang, S., Zhang, X., Wang, N., Wang, Y., 2005. Global Biogeochemistry Cycles 20, Citation No. GB1004. Identification and kinetic characteristics of an indigenous diesel-degrading Gordonia alkanivorans Strain Young, C.-C., Lin, T.-C., Yeh, M.-S., Shen, F.-T., Chang, J.-S., 2005. World Journal of Microbiology and Biotechnology 21, 1409-1414. Paleoclimatology/Palaeoceanography The Late Eocene 187Os/188Os excursion: Chemostratigraphy, cosmic dust flux and the Early Oligocene glaciation Dalai, T.K., Ravizza, G.E., Peucker-Ehrenbrink, B., 2006. Earth and Planetary Science Letters 241, 477–492. A late Miocene dust shower from the break-up of an asteroid in the main belt Farley, K.A., Vokrouhlicky, D., Bottke, W.F., Nesvorny, D., 2006. Nature 439, 295–297. Stratigraphic distribution of macerals and biomarkers in the Donets Basin: Implications for paleoecology, paleoclimatology and eustacy Izart, A., Sachsenhofer, R.F., Privalov, V.A., Elie, M., Panova, E.A., Antsiferov, V.A., Alsaab, D., Rainer, T., Sotirov, A., Zdravkov, A., Zhykalyak, M.V., 2006. International Journal of Coal Geology 66, 69–107. Orbitally driven insolation forcing on Holocene climate trends: Evidence from alkenone data and climate modeling Lorenz, S.J., Kim, J.-H., Rimbu, N., Schneider, R.R., Lohmann, G., 2006. Paleoceanography 21, Citation No. PA1002. Record of palaeoenvironmental changes in a Lower Permian organic-rich lacustrine succession: Integrated sedimentological and geochemical study of the Rudnik member, Krkonose Piedmont Basin, Czech Republic Martinek K., Blecha M., Daneˇk V., Francu˚ J., Hladı´kova´ J., Johnova R., Ulicˇny´ D., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 85–128. Abrupt reversal in ocean overturning during the Palaeocene/Eocene warm period Nunes, F., Norris, R.D., 2006. Nature 439, 60–63. Assessing mechanisms of environmental change: Palynological signals across the Late Ludlow (Silurian) positive isotope excursion (d13C, d18O) on Gotland, Sweden Stricanne, L., Munnecke, A., Pross, J., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 1–31. Isotopic and faunal record of high paleotemperatures in the Kimmeridgian of the subpolar Urals Zakharov, V.A., Baudin, F., Dzyuba, O.S., Daux, V., Zverev, K.V., Renard, M., 2005. Geologiya I Geofizika (Russian Geology and Geophysics) 46, 3–20. Paleoecology of Extinction Events Extinction cascades and catastrophe in ancient food webs Roopnarine, P.D., 2006. Paleobiology 32, 1–19. Precambrian Geochemistry Preservation of ~3.4–3.5 Ga microbial biomarkers in pillow lavas and hyaloclastites from the Barberton Greenstone Belt, South Africa Banerjee, N.R., Furnes, H., Muehlenbachs, K., Staudigel, H., de Wit, M., 2006. Earth and Planetary Science Letters 241, 707–722.
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Comment on ‘‘A Hydrogen-Rich Early Earth Atmosphere’’ Catling, D.C., 2006. Science 311, 38. Hf isotopes of the 3.8 Ga zircons in eastern Hebei Province, China: Implications for early crustal evolution of the North China Craton Fuyuan, W., Jinhui, Y., Xiaoming, L., Tiesheng, L., Liewen, X., Yueheng, Y., 2006. Chinese Science Bulletin 50, 2473–2480. The 3.26-3.24 Ga Barberton asteroid impact cluster: Tests of tectonic and magmatic consequences, Pilbara Craton, Western Australia Glikson, A., Vickers, J., 2006. Earth and Planetary Science Letters 241, 11–20. Middle Archean volcano-hydrothermal sequence: Bacterial microfossil-bearing 3.2 Ga Dixon Island Formation, coastal Pilbara terrane, Australia Kiyokawa, S., Ito, T., Ikehara, M., Kitajima, F., 2006. Geological Society of America Bulletin 118, 3–22. The potential significance of microbial Fe(III) reduction during deposition of Precambrian banded iron formations Konhauser, K.O., Newman, D.K., Kappler, A., 2005. Geobiology 3, 167–177. Chemical composition of seawater in Neoproterozoic: Results of fluid inclusion study of halite from Salt Range (Pakistan) and Amadeus Basin (Australia) Kovalevych, V.M., Marshall, T., Peryt, T.M., Petrychenko, O.Y., Zhukova, S.A., 2006. Precambrian Research 144, 39–51. Response to Comment on ‘‘Iron Isotope Constraints on the Archean and Paleoproterozoic Ocean Redox State’’ Rouxel, O.J., Bekker, A., Edwards, K.J., 2006. Science 311, 177. Weathering of quartz as an Archean climatic indicator Sleep, N.H., Hessler, A.M., 2006. Earth and Planetary Science Letters 241, 594–602. Response to Comment on ‘‘A Hydrogen-Rich Early Earth Atmosphere’’ Tian, F., Toon, O.B., Pavlov, A.A., 2006. Science 311, 38. Comment on ‘‘Iron Isotope Constraints on the Archean and Paleoproterozoic Ocean Redox State’’ Yamaguchi, K.E., Ohmoto, H., 2006. Science 311, 177. Evaporite sedimentation in the Precambrian as related to changes in biosphere and seawater chemistry, Article 1: evaporites of the Archean and Lower Proterozoic Zharkov, M.A., 2005. Stratigraphy and Geological Correlation 13, 134–142.
Petroleum/Source Rock Geochemistry Reply to ‘‘Origin, sequence stratigraphy and depositional environment of an upper Ordovician (Hirnantian) deglacial black shale, Jordan’’ Armstrong, H.A., Turner, B.R., Makhlouf, I.M., Weedon, G.P., Williams, M., Al Smadi, A., Abu Salah, A., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 356–360. Experimental study and modeling of the role of hydronaphthalenics on the thermal stability of hydrocarbons under laboratory and geological conditions Burkle´-Vitzthum, V., Michels, R., Bounaceur, R., Marquaire, P.-M., Scacchi, G., 2005. Industrial & Engineering Chemistry Research 44, 8972–8987. Petroleum expulsion Part 1. Theory of kerogen swelling in multicomponent solvents Ertas, D., Kelemen, S.R., Halsey, T.C., 2006. Energy & Fuels 20, 295–300.
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Geographical classification of crude oils by Kohonen self-organizing maps Fonseca, A.M., Biscaya, J.L., Aires-de-Sousa, J., Lobo, A.M., 2006. Analytica Chimica Acta 556, 374– 382. Reconnaissance of soil gas composition over the buried fault and fracture zone in southern Taiwan Fu, C.-C., Yang, T.F., Walia, V., Chen, C.-H., 2005. Geochemical Journal 39, 427–439. Origin and distribution of coalbed gases from the Velenje Basin, Slovenia Kanduc, T., Pezdic, J., 2005. Geochemical Journal 39, 397–409. Petroleum expulsion Part 2. Organic matter type and maturity effects on kerogen swelling by solvents and thermodynamic parameters for kerogen from Regular Solution Theory Kelemen, S.R., Walters, C.C., Ertas, D., Kwiatek, L.M., Curry, D.J., 2006. Energy & Fuels 20, 301– 308. Petroleum expulsion Part 3. A model of chemically driven fractionation during expulsion of petroleum from kerogen Kelemen, S.R., Walters, C.C., Ertas, D., Freund, H., Curry, D.J., 2006. Energy & Fuels 20, 309–319. Liquid chromatographic determination of vanadium in petroleum oils and mineral ore samples using 2-acetylpyridne-4-phenyl-3-thiosemicarbazone as derivatizing reagent Khuhawar, M.Y., Arain, G.M., 2006. Talanta 68, 535–541. Kerogen chemistry. 8. Hydrous pyrolysis of Rundle kerogen: source of the oxygen in CO2 and mineral catalysis Larsen, J.W., Hu, J., 2006. Energy & Fuels 20, 278–280. Speciation analysis of volatile and non-volatile vanadium compounds in Brazilian crude oils using high-resolution continuum source graphite furnace atomic absorption spectrometry Lepri, F.G., Welz, B., Borges, D.L.G., Silva, A.F., Vale, M.G.R., Heitmann, U., 2006. Analytica Chimica Acta 558, 195–200. Origin, sequence stratigraphy and depositional environment of an Upper Ordovician (Hirnantian) deglacial black shale, Jordan–Discussion Luning, S., Loydell, D.K., Storch, P., Shahin, Y., Craig, J., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 352–355. Identification of alkyl carbazoles and alkyl benzocarbazoles in Brazilian petroleum derivatives Oliveira, E.C., Vaz de Campos, M.C., Rodrigues, M.R.A., Pe´rez, V.F., Melecchi, M.I.S., Vale, M.G.R., Zini, C.A., Carama˜o, E.B., 2006. Journal of Chromatography A 1105, 186–190. Depositional environments, organic maturity and petroleum potential of the Cretaceous coal-bearing Atane Formation at Qullissat, Nuussuaq Basin, West Greenland Pedersen, G.K., Andersen, L.A., Lundsteen, E.B., Petersen, H.I., Bojesen-Koefoed, J.A., Nytoft, H.P., 2006. Journal of Petroleum Geology 29, 3–26. The Miocene New Jersey passive margin as a model for the distribution of sedimentary organic matter in siliciclastic deposits Pellaton, C., Gorin, G.E., 2005. Journal of Sedimentary Research 75, 1011–1027. North Slope, Alaska: Source rock distribution, richness, thermal maturity, and petroleum charge Peters, K.E., Magoon, L.B., Bird, K.J., Valin, Z.C., Keller, M.A., 2006. American Association of Petroleum Geologists Bulletin 90, 261–292. Determination of asphaltene and resin content in Venezuelan crude oils by using fluorescence spectroscopy and partial least squares regression Riveros, L., Jaimes, B., Ranaudo, M.A., Castillo, J., Chirinos, J., 2006. Energy & Fuels 20, 227–230.
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Examination of an Oligocene lacustrine ecosystem using C and N stable isotopes Schweizer, M.K., Wooller, M.J., Toporski, J., Fogel, M.L., Steele, A., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 335–351. Experimental investigation of single carbon compounds under hydrothermal conditions Seewald, J.S., Zolotov, M.Y., McCollom, T., 2006. Geochimica et Cosmochimica Acta 70, 446–460. Analysis of tert-butyldimethylsilyl derivatives in heavy gas oil from Brazilian naphthenic acids by gas chromatography coupled to mass spectrometry with electron impact ionization Vaz de Campos, M.C., Oliveira, E.C., Filho, P.J.S., Piatnicki, C.M.S., Carama˜o, E.B., 2006. Journal of Chromatography A 1105, 95–105. Deciphering biodegradation effects on light hydrocarbons in crude oils using their stable carbon isotopic composition: A case study from the Gullfaks oil field, offshore Norway Vieth, A., Wilkes, H., 2006. Geochimica et Cosmochimica Acta 70, 651–665. Identification and properties of mercury species in crude oil Wilhelm, S.M., Liang, L., Kirchgessner, D., 2006. Energy & Fuels 20, 180–186. Petroleum potential of the Cenomanian/Turonian boundary black shales in the Lower and Middle Antalya Nappes, Western Taurus region of Turkey Yurtsever, T.S., Demirel, I.H., 2006. Energy Sources 28, 299–309. Oil cracking: An important way for highly efficient generation of gas from marine source rock kitchen Zhao, W., Wang, Z., Zhang, S., Wang, H., Wang, Y., 2006. Chinese Science Bulletin 50, 2628–2635. Isotopic evidence of TSR origin for natural gas bearing high H2S contents within the Feixianguan Formation of the northeastern Sichuan Basin, southwestern China Zhu, G., Zhang, S., Liang, Y., Dia, J., Li, J., 2005. Science in China Series D-Earth Sciences 48, 1960– 1971. Production/Engineering Geochemistry Mesoscopic simulation of aggregation of asphaltene and resin molecules in crude oils Aguilera-Mercado, B., Herdes, C., Murgich, J., Mu¨ller, E.A., 2006. Energy & Fuels 20, 327–338. Molecularly explicit characterization model (MECM) for light petroleum fractions Albahri, T.A., 2005. Industrial & Engineering Chemistry Research 44, 9286–9298. Structure representation of asphaltene GPC fractions derived from Kuwaiti residual oils Ali, F., Ghaloum, N., Hauser, A., 2006. Energy & Fuels 20, 231–238. Calculation of the interaction potential curve between asphaltene–asphaltene, asphaltene–resin, and resin–resin systems using Density Functional Theory Alvarez-Ramirez, F., Ramirez-Jaramillo, E., Ruiz-Morales, Y., 2006. Energy & Fuels 20, 195–204. X-ray diffraction of subfractions of petroleum asphaltenes Andersen, S.I., Jensen, J.O., Speight, J.G., 2005. Energy & Fuels 19, 2371–2377. Fluid properties of asphaltenes at 310–530 °C Asprino, O.J., Elliott, J.A.W., McCaffrey, W.C., Gray, M.R., 2005. Energy & Fuels 19, 2026–2033. Interactions between synthetic and indigenous naphthenic acids and divalent cations across oil–water interfaces: effects of addition of oil-soluble non-ionic surfactants Brandal, Ø., Hanneseth, A.-M., Sjo¨blom, J., 2005. Colloid & Polymer Science 284, 124–133.
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Estimation of the solvent power of crude oil from density and viscosity measurements Correra, S., Merlini, M., Di Lullo, A., Merino-Garcia, D., 2005. Industrial & Engineering Chemistry Research 44, 9307–9315. Search for hydrocarbons by the method of induced seismoacoustic emission in wells Dryagin, V.V., Kuznetsov, O.L., Starodubtsev, A.A., Rok, V.E., 2005. Acoustical Physics 51, S54–S60. New approach to the characterisation of petroleum mixtures used in the modelling of separation processes Eckert, E., Vanek, T., 2005. Computers & Chemical Engineering 30, 343–356. Investigation of petroleum medium fractions and distillation residues from Brazilian crude oils by thermogravimetry Gonc¸alves, M.L.A., Ribeiro, D.A., da Mota, D.A.P., Teixeira, A.M.R.F., Teixeira, M.A.G., 2006. Fuel 85, 1151–1155. The effect of alkali on crude oil/water interfacial properties and the stability of crude oil emulsions Guo, J., Liu, Q., Li, M., Wu, Z., Christy, A.A., 2006. Colloids and Surfaces A: Physicochemical and Engineering Aspects 273, 213–218. Estimation of boiling and melting points of light, heavy and complex hydrocarbons by means of a modified group vector space method Li, H., Higashi, H., Tamura, K., 2006. Fluid Phase Equilibria 239, 213–222. Synergy of alkali and surfactant in emulsification of heavy oil in brine Liu, Q., Dong, M., Yue, X., Hou, J., 2006. Colloids and Surfaces A: Physicochemical and Engineering Aspects 273, 219–228. A modified Flory–Huggins model for prediction of asphaltenes precipitation in crude oil Pazuki, G.R., Nikookar, M., 2006. Fuel 85, 1083–1086. Rheology of asphaltene-toluene/water interfaces Sztukowski, D.M., Yarranton, H.W., 2005. Langmuir 21, 11651–11658. Application of molecular simulation to calculate miscibility of a model asphaltene molecule Vicente, L., Soto, C.S., Horacio, Pacheco-Sa´nchez, H., Herna´ndez-Trujillo, J., Martinez-Magada´n, J.M., 2006. Fluid Phase Equilibria 239, 100–106.
Recent Sediments The determination of total dissolved free primary amines in seawater: Critical factors, optimized procedure and artefact correction Aminot, A., Ke´rouel, R., 2006. Marine Chemistry 98, 223–240. Polycyclic aromatic hydrocarbons fluxes during the past 50 years observed in dated sediment cores from Andean mountain lakes in Central South Chile Barra, R., Popp, P., Quiroz, R., Treutler, H.-C., Araneda, A., Bauer, C., Urrutia, R., 2006. Ecotoxicology and Environmental Safety 63, 52–60. Seasonal and spatial distribution of particulate organic matter (POM) in the Chukchi and Beaufort Seas Bates, N.R., Hansell, D.A., Bradley Moran, S., Codispoti, L.A., 2005. Deep Sea Research Part II: Topical Studies in Oceanography 52, 3324–3343. Optical properties of low molecular weight and colloidal organic matter: Application of the ultrafiltration permeation model to DOM absorption and fluorescence Belzile, C., Guo, L., 2006. Marine Chemistry 98, 183–196.
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Mechanisms for organic matter and phosphorus burial in sediments of a shallow, subtropical, macrophytedominated lake Brenner, M., Hodell, D., Leyden, B., Curtis, J., Kenney, W., Gu, B., Newman, J., 2006. Journal of Paleolimnology 35, 129–148. Comparative study on microphytobenthic pigments of muddy and sandy intertidal sediments of the Tagus estuary Cartaxana, P., Mendes, C.R., van Leeuwe, M.A., Brotas, V., 2006. Estuarine, Coastal and Shelf Science 66, 225–230. Microbial production, utilization, and enzymatic degradation of organic matter in the upper trophogenic layer in the pelagial zone of lakes along a eutrophication gradient Chro´st, R.J., Siuda, W., 2006. Limnology and Oceanography 51, 749–762. Seasonal trends in the abundance, composition and bioavailability of particulate and dissolved organic matter in the Chukchi/Beaufort Seas and Western Canada Basin Davis, J., Benner, R., 2005. Deep Sea Research Part II: Topical Studies in Oceanography 52, 3396–3410. Distribution and sources of organic carbon, nitrogen and their isotopes in sediments of the subtropical Pearl River estuary and adjacent shelf, Southern China Hu, J., Peng, P.a., Jia, G., Mai, B., Zhang, G., 2006. Marine Chemistry 98, 274–285. Fatty acid composition of surface sediments in the subtropical Pearl River estuary and adjacent shelf, Southern China Hu, J., Zhang, H., Peng, P.a., 2006. Estuarine, Coastal and Shelf Science 66, 346–356. Incorporation of aged dissolved organic carbon (DOC) by oceanic particulate organic carbon (POC): An experimental approach using natural carbon isotopes Hwang, J., Druffel, E.R.M., Bauer, J.E., 2006. Marine Chemistry 98, 315–322. A comparison of sedimentary aliphatic hydrocarbon distribution between the southern Okinawa Trough and a nearby river with high sediment discharge Jeng, W.-L., Huh, C.-A., 2006. Estuarine, Coastal and Shelf Science 66, 217–224. Lipids in hydrothermal sulfide ores from the 9°50’ N Field of the East Pacific Rise Lein, A.Y., Peresypkin, V.I., Bogdanov, A., Ivanov, M.V., 2005. Doklady Earth Sciences 405, 1231–1234. Sediment organic matter composition and dynamics in San Francisco Bay, California, USA: Seasonal variation and interactions between water column chlorophyll and the benthos Lesen, A.E., 2006. Estuarine, Coastal and Shelf Science 66, 501–512. Strong hydrographic controls on spatial and seasonal variability of dissolved organic carbon in the Chukchi Sea Mathis, J.T., Hansell, D.A., Bates, N.R., 2005. Deep Sea Research Part II: Topical Studies in Oceanography 52, 3245–3258. Determination of phospholipid fatty acid structures and stable carbon isotope compositions of deep-sea sediments of the Northwest Pacific, ODP site 1179 Mills, C.T., Dias, R.F., Graham, D., Mandernack, K.W., 2006. Marine Chemistry 98, 197–209. Stable isotope compositions of organic carbon and nitrogen of two mangrove stands along the Tanzanian coastal zone Muzuka, A.N.N., Shunula, J.P., 2006. Estuarine, Coastal and Shelf Science 66, 447–458. A comparison of non-hydrolytic methods for extracting amino acids and proteins from coastal marine sediments Nunn, B.L., Keil, R.G., 2006. Marine Chemistry 98, 31–42. Distribution of polycyclic aromatic hydrocarbons in riverine waters after Mediterranean forest fires Olivella, M.A., Ribalta, T.G., de Febrer, A.R., Mollet, J.M., de las Heras, F.X.C., 2006. Science of the Total Environment 355, 156–166.
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Nitrogen cycling in the sediments of Santa Barbara basin and Eastern Subtropical North Pacific: Nitrogen isotopes, diagenesis and possible chemosymbiosis between two lithotrophs (Thioploca and Anammox) – ‘‘riding on a glider’’ Prokopenko, M.G., Hammond, D.E., Berelson, W.M., Bernhard, J.M., Stott, L., Douglas, R., 2006. Earth and Planetary Science Letters 242, 186–204. Short-term variation in behavior of allochthonous particulate organic matter accompanying changes of river discharge in Ise Bay, Japan Sugimoto, R., Kasai, A., Yamao, S., Fujiwara, T., Kimura, T., 2006. Estuarine, Coastal and Shelf Science 66, 267–279. Distribution and sources of organic matter in surficial sediments on the shelf and slope off Tokachi, western North Pacific, inferred from C and N stable isotopes and C/N ratios Usui, T., Nagao, S., Yamamoto, M., Suzuki, K., Kudo, I., Montani, S., Noda, A., Minagawa, M., 2006. Marine Chemistry 98, 241–259. Sources and transfer of organic matter in food webs of a Mediterranean coastal environment: Evidence for spatial variability Vizzini, S., Mazzola, A., 2006. Estuarine, Coastal and Shelf Science 66, 459–467. Changes in accumulation of organic matter and stable carbon and nitrogen isotopes in sediments of two Slovenian mountain lakes (Lake Ledvica and Lake Planina), induced by eutrophication changes Vreca, P., Muri, G., 2006. Limnology and Oceanography 51, 781–790. Soils Amino acids in grassland soils: Climatic effects on concentrations and chirality Amelung, W., Zhang, X., Flach, K.W., 2006. Geoderma 130, 207–217. Optimization of RP-HPLC analysis of low molecular weight organic acids in soil Ding, J., Wang, X., Zhang, T., Li, Q., Luo, M., 2006. Journal of Liquid Chromatography and Related Technologies 29, 99–112. The diversity and biogeography of soil bacterial communities Fierer, N., Jackson, R.B., 2006. Proceedings of the National Academy of Sciences USA 103, 626–631. Chemical composition of decomposing stumps in successive rotation of Chinese fir (Cunninghamia lanceolata (Lamb.) Hook.) plantations Huang, Z., Xu, Z., Boyd, S., Williams, D., 2006. Chinese Science Bulletin 50, 2581–2586. Organic marker compounds for surface soil and fugitive dust from open lot dairies and cattle feedlots Rogge, W.F., Medeiros, P.M., Simoneit, B.R.T., 2006. Atmospheric Environment 40, 27–49. Expanded compilations of references with abstracts in Microsoft Word and ISI EndNote formats are available at: http://www.eaog.org/other/ref_update.html
GEOCHEMISTRY ARTICLES – January 2006 Analytical Chemistry Applications de la chromatographie bidimensionnelle a l’analyse de derives soufres dans les gazoles Bertoncini, F., Guerrero, M.-R., Vendeuvre, C., Espinat, D., Thiebaut, D., 2005. Spectra Analyse 34, 32–37. Apport de la chromatographie en phase gazeuse bidimensionnelle pour la caracterisation de matrices complexes Bertoncini, F., Vendeuvre, C., Espinat, D., Thiebaut, D., 2005. Spectra Analyse 34, 26–31. Nouvelles opportunites pour caracteriser les sources de pollution marine par GCxGC Bertoncini, F., Vendeuvre, C., Haeseler, F., Espinat, D., Thiebaut, D., 2005. Spectra Analyse 34, 38–43. Accurate mass measurement for the determination of elemental formula – A tutorial Bristow, A.W.T., 2006. Mass Spectrometry Reviews 25, 99–111. Statistical evaluation of an analytical GC/MS method for the determination of long chain fatty acids Campo, P., Sorial, G.A., Suidan, M.T., Venosa, A.D., 2006. Talanta 68, 888–894. Simultaneous derivatization and extraction of primary amines in river water with dynamic hollow fiber liquid– phase microextraction followed by gas chromatography–mass spectrometric detection Chia, K.-J., Huang, S.-D., 2006. Journal of Chromatography A 1103, 158–161. Application of enhanced large volume injection; an approach to the analysis of petroleum hydrocarbons in water Dellavedova, P., Vitelli, M., Ferraro, V., Toro, M., Santoro, M., 2006. Chromatographia 63, 73–76. Detection limits of matrix-assisted laser desorption/ionisation mass spectrometry coupled to chromatography – a new application of solvent-free sample preparation Falkenhagen, J., Weidner, S.M., 2005. Rapid Communications in Mass Spectrometry 19, 3724–3730. Separation of molecular constituents from a humic acid by solid-phase extraction following a transesterification reaction Fiorentino, G., Spaccini, R., Piccolo, A., 2006. Talanta 68, 1135–1142. Comparison of comprehensive two-dimensional gas chromatography in conventional and stop-flow modes Harynuk, J., Go´recki, T., 2006. Journal of Chromatography A 1105, 159–167. Development of a removable multi-column-switching system for gas chromatography Hinz, D.C., 2006. Journal of Chromatography A 1105, 87–94. Selective ion filtering by digital thresholding: a method to unwind complex ESI-mass spectra and eliminate signals from low molecular weight chemical noise Hofstadler, S.A., Drader, J.J., Schink, A., 2006. Analytical Chemistry 78, 372–378. Comparative visualization for comprehensive two-dimensional gas chromatography Hollingsworth, B.V., Reichenbach, S.E., Tao, Q., Visvanathan, A., 2006. Journal of Chromatography A 1105, 51–58. doi:10.1016/j.orggeochem.2006.01.010
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Prediction of gas chromatographic peak width in capillary columns at different temperatures, carrier gas flows, column lengths, inside diameters and carbon numbers Krisnangkura, K., Pongtonkulpanich, V., 2006. Journal of Separation Science 29, 81–89. Resolution of 13 polycyclic aromatic hydrocarbons by constant-wavelength synchronous spectrofluorometry Lage–Yusty, M.A., Lo´pez-Gonza´lez, J., Simal-Lozano, J., 2005. Analytical Science 21, 1203–1212. Twenty years of evaporative light scattering detection Megoulas, N., Koupparis, M., 2005. Critical Reviews in Analytical Chemistry 35, 301–316. Validation of a one-step extraction/methylation method for determination of fatty acids and cholesterol in marine tissues Meier, S., Mjos, S.A., Joensen, H., Grahl-Nielsen, O., 2006. Journal of Chromatography A 1104, 291–298. Characterising high mass materials in heavy oil fractions by size exclusion chromatography and MALDI-mass spectrometry Millan, M., Behrouzi, M., Karaca, F., Morgan, T.J., Herod, A.A., Kandiyoti, R., 2005. Catalysis Today 109, 154–161. Fast enantiomeric analysis of a complex essential oil with an innovative multidimensional gas chromatographic system Mondello, L., Casilli, A., Tranchida, P.Q., Furukawa, M., Komori, K., Miseki, K., Dugo, P., Dugo, G., 2006. Journal of Chromatography A 1105, 11–16. Development of two-dimensional gas chromatography/isotope ratio mass spectrometry for the stable carbon isotopic analysis of C2–C5 non-methane hydrocarbons emitted from biomass burning Nara, H., Nakagawa, F., Yoshida, N., 2006. Rapid Communications in Mass Spectrometry 20, 241–247. A new hybrid electrospray Fourier transform mass spectrometer: design and performance characteristics O’Connor, P.B., Pittman, J.L., Thomson, B.A., Budnik, B.A., Cournoyer, J.C., Jebanathirajah, J., Lin, C., Moyer, S., Zhao, C., 2006. Rapid Communications in Mass Spectrometry 20, 259–266. Flow-through system for the generation of standard aqueous solution of polycyclic aromatic hydrocarbons Ouyang, G., Chen, Y., Pawliszyn, J., 2006. Journal of Chromatography A 1105, 176–179. Theory and use of the pseudophase model in gas–liquid chromatographic enantiomeric separations Pino, V., Lantz, A.W., Anderson, J.L., Berthod, A., Armstrong, D.W., 2006. Analytical Chemistry 78, 113–119. Short metal capillary columns packed with polymer-coated fibrous materials in high-temperature gas chromatography Saito, Y., Ogawa, M., Imaizumi, M., Ban, K., Abe, A., Takeichi, T., Wada, H., Jinno, K., 2005. Journal of Chromatographic Science 43, 536–541. Determination of polycyclic aromatic hydrocarbons (PAHs) in marine, brackish, and river sediments by HPLC, following ultrasonic extraction Sarrazin, L., Diana, C., Wafo, E., Pichard-Lagadec, V., Schembri, T., Monod, J.-L., 2006. Journal of Liquid Chromatography and Related Technologies 29, 69–85. Continuous microwave-assisted extraction coupled on-line with liquid–liquid extraction: Determination of aliphatic hydrocarbons in soil and sediments Serrano, A., Gallego, M., 2006. Journal of Chromatography A 1104, 323–330. Optimization and validation of HPLC–UV–DAD and HPLC–APCI–MS methodologies for the determination of selected PAHs in water samples Titato, G.M., Lanc¸as, F.M., 2006. Journal of Chromatographic Science 44, 35–40.
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Zeolites and zeolite-based materials in analytical chemistry Valde´s, M.G.M., Pe´rez-Cordoves, A.I., Diaz-Garcia, M.E., 2006. TrAC Trends in Analytical Chemistry 25, 24–30. Applications of comprehensive two-dimensional gas chromatography to the characterization of petrochemical and related samples von Mu¨hlen, C., Zini, C.A., Carama˜oa, E.B., Marriott, P.J., 2006. Journal of Chromatography A 1105, 39– 50. Universal acoustic flame detection for modified supercritial fluid chromatography Xia, Z., Thurbide, K.B., 2006. Journal of Chromatography A 1105, 180–185. Performance of a mass analyzer with orbital trapping for peptide analysis Yates, J.R., Cociorva, D., Liao, L., Zabrouskov, V., 2006. Analytical Chemistry 78, 493–500. Detecting and aligning peaks in mass spectrometry data with applications to MALDI Yu, W., Wu, B., Lin, N., Stone, K., Williams, K., Zhao, H., 2006. Computational Biology and Chemistry 30, 27–38. Standardizing the novel method for chemical fingerprinting of oil and petroleum products based on positive electrospray mass spectrometry and chemometrics Zahlsen, K., Eide, I., 2006. Energy & Fuels 20, 265–270. Effect of first-dimension column film thickness on comprehensive two-dimensional gas chromatographic separation Zhu, Z., Harynuk, J., Gorecki, T., 2006. Journal of Chromatography A 1105, 17–24.
Archaeological/Art Organic Chemistry Stable isotope evidence for palaeodiets in southern Turkmenistan during Historical period and Iron Age Bocherens, H., Mashkour, M., Drucker, D.G., Moussa, I., Billiou, D., 2006. Journal of Archaeological Science 33, 253–264. Modern and fossil charcoal: aspects of structure and diagenesis Cohen-Ofri, I., Weiner, L., Boaretto, E., Mintz, G., Weiner, S., 2006. Journal of Archaeological Science 33, 428–439. Organic geochemical evidence for pine tar production in Middle Eastern Sweden during the Roman Iron Age Hjulstro¨m, B., Isaksson, S., Hennius, A., 2006. Journal of Archaeological Science 33, 283–294. Coal geochemistry in the service of archaeology Palmer, C.A., Finkelman, R.B., 2006. International Journal of Coal Geology 66, 151–152. Characterization of proteinaceous glues in old paintings by separation of the o-phtalaldehyde derivatives of their amino acids by liquid chromatography with fluorescence detection Peris-Vicente, J., Gimeno Adelantado, J.V., Carbo´, M.T.D., Castro, R.M., Reig, F.B., 2006. Talanta 68, 1648–1654. New faunal analyses and amino acid dating of the Lower Palaeolithic site at East Farm, Barnham, Suffolk Preece, R.C., Penkman, K.E.H., 2005. Proceedings of the Geologists’ Association 116, 363–377. Preparative separation of underivatized amino acids for compound-specific stable isotope analysis and radiocarbon dating of hydrolyzed bone collagen Tripp, J.A., McCullagh, J.S.O., Hedges, R.E.M., 2006. Journal of Separation Science 29, 41–48.
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Astrobiology Key science questions from the Second Conference on Early Mars: Geologic, Hydrologic, and Climatic Evolution and the Implications for Life Beaty, D.W., Clifford, S.M., Borg, L.E., Catling, D.C., Craddock, R.A., Marais, D.J.D., Farmer, J.D., Frey, H.V., Haberle, R.M., Mckay, C.P., Newsom, H.E., Parker, T.J., Segura, T., Tanaka, K.L., 2005. Astrobiology 5, 663–689. A climatic thermostat making Earth habitable Ditlevsen, P.D., 2005. International Journal of Astrobiology 4, 3–7. Bacillus subtilis spores on artificial meteorites survive hypervelocity atmospheric entry: Implications for lithopanspermia Fajardo-Cavazos, P., Link, L., Melosh, H.J., Nicholson, W.L., 2005. Astrobiology 5, 726–736. Photochemical stability of biomolecules in the experiments modelling Martian surface conditions Gontareva, N.B., 2005. International Journal of Astrobiology 4, 93–96. Activity and stability of a complex bacterial soil community under simulated Martian conditions Hansen, A.A., Merrison, J., Bente, P.N., Lomstein, A., Finster, K., 2005. International Journal of Astrobiology 4, 135–144. Some problems related to the origin of methane on Mars Krasnopolsky, V.A., 2006. Icarus 180, 359–367. Biological potential of low-temperature aqueous environments on Mars Link, L.S., Jakosky, B.M., Thyne, G.D., 2005. International Journal of Astrobiology 4, 155–164. The Cyborg Astrobiologist: scouting red beds for uncommon features with geological significance McGuire, P.C., Dı´az-Martı´nez, E., Ormo¨, J., Go´mez-Elvira, J., Rodrı´guez-Manfredi, J.A., Sebastia´nMartı´nez, E., Ritter, H., Haschke, R., Oesker, M., Ontrup, J., 2005. International Journal of Astrobiology 4, 101–113. Adsorption water–related potential chemical and biological processes in the upper Martian surface Mohlmann, D., 2005. Astrobiology 5, 770–777. Extraction of organic signatures from carbonates and evaporites: from mineral deposits to Mars Parnell, J., 2005. Proceedings of the Geologists’ Association 116, 281–291. Thermodynamics of life on the planetary scale Rosing, M.T., 2005. International Journal of Astrobiology 4, 9–11. Venus, Mars, and the ices on Mercury and the Moon: Astrobiological implications and proposed mission designs Schulze-Makuch, D., Dohm, J.M., Faire´n, A.G., Baker, V.R., Fink, W., Strom, R.G., 2005. Astrobiology 5, 778–795. Biosignatures from Earth-like planets around M dwarfs Segura, A., Kasting, J.F., Meadows, V., Cohen, M., Scalo, J., Crisp, D., Butler, R.A.H., Tinetti, G., 2005. Astrobiology 5, 706–725. A search for chiral signatures on Mars Sparks, W.B., Hough, J.H., Bergeron, L.E., 2005. Astrobiology 5, 737–748. Caenorhabditis elegans survives atmospheric breakup of STS-107, Space Shuttle Columbia Szewczyk, N.J., Mancinelli, R.L., McLamb, W., Reed, D., Blumberg, B.S., Conley, C.A., 2005. Astrobiology 5, 690–705.
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Biochemistry How carotenoids function in photosynthetic bacteria Cogdell, R.J., Frank, H.A., 1987. Biochimica et Biophysica Acta – Reviews on Bioenergetics 895, 63–79.
Biodegradation Study of a hexane-degrading consortium in a biofilter and in liquid culture: biodiversity, kinetics and characterization of degrading strains Amouric, A., Verhe´, F., Auria, R., Casalot, L., 2006. FEMS Microbiology Ecology 55, 239–247. Assessment of naphthalene biodegradation efficiency of Pseudomonas and Burkholderia strains tested in soil model systems Filonov, A.E., Puntus, I.F., Karpov, A.V., Kosheleva, I.A., Akhmetov, L.I., Yonge, D.R., Petersen, J.N., Boronin, A.M., 2006. Journal of Chemical Technology & Biotechnology 81, 216–224. PAH degradation capacity of soil microbial communities – Does it depend on PAH exposure? Johnsen, A., Karlson, U., 2005. Microbial Ecology 50, 488–495. Enhanced biodegradation of diesel oil by a newly identified Rhodococcus baikonurensis EN3 in the presence of mycolic acid Lee, M., Kim, M.K., Singleton, I., Goodfellow, M., Lee, S.-T., 2006. Journal of Applied Microbiology 100, 325–333. Culture-dependent and -independent approaches establish the complexity of a PAH-degrading microbial consortium Vin˜as, M., Sabate´, J., Guasp, C., Lalucat, J., Solanas, A.M., 2005. Canadian Journal of Microbiology 51, 897–909. Deep desulfurization of diesel oil and crude oils by a newly isolated Rhodococcus erythropolis strain Yu, B., Xu, P., Shi, Q., Ma, C., 2006. Applied and Environmental Microbiology 72, 54–58. Methanogenic pathway of the Quaternary biogenic gases in the Qaidam Basin, China Zhang, X., Song, C., Qi, Y., Duan, Y., Li, X., Ma, L., Zhang, M., 2005. Geochemical Journal 39, 411–416.
Biodegradation Pathways/Genomics The University of Minnesota Biocatalysis/Biodegradation Database: the first decade Ellis, L.B.M., Roe, D., Wackett, L.P., 2006. Nucleic Acids Research 34, D517–D521. Propane and n-butane oxidation by Pseudomonas putida GPo1 Johnson, E.L., Hyman, M.R., 2006. Applied and Environmental Microbiology 72, 950–952. Methylation is the initial reaction in anaerobic naphthalene degradation by a sulfate-reducing enrichment culture Safinowski, M., Meckenstock, R.U., 2006. Environmental Microbiology 8, 347–352. Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases van Beilen, J.B., Funhoff, E.G., van Loon, A., Just, A., Kaysser, L., Bouza, M., Holtackers, R., Rothlisberger, M., Li, Z., Witholt, B., 2006. Applied and Environmental Microbiology 72, 59–65.
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Biogeochemistry Seismically triggered microbial methane production relating to the Vogtland—NW Bohemia earthquake swarm period 2000, Central Europe Bra¨uer, K., Ka¨mpf, H., Faber, E., Koch, U., Nitzsche, H.-M., Strauch, G., 2005. Geochemical Journal 39, 441–450. Reduction of Prussian Blue by the two iron-reducing microorganisms Geobacter metallireducens and Shewanella alga Jahn, M.K., Haderlein, S.B., Meckenstock, R.U., 2006. Environmental Microbiology 8, 362–367. Microbial activity in biogeochemical gradients – new aspects of research Kappler, A., Emerson, D., Edwards, K., Amend, J.P., Gralnick, J.A., Grathwohl, P., Hoehler, T., Straub, K.L., 2005. Geobiology 3, 229–233. Zero valent iron as an electron-donor for methanogenesis and sulfate reduction in anaerobic sludge Karri, S., Sierra-Alvarez, R., Field, J.A., 2005. Biotechnology and Bioengineering 92, 810–819. Living under an atomic force microscope. An optimized approach for in vivo investigations on surface alterations towards biomineral nucleation on cyanobacterial cells Obst, M., Dittrich, M., 2005. Geobiology 3, 179–193. Image analysis for quantification of bacterial rock weathering Puente, M.E., Rodriguez-Jaramillo, M.C., Li, C.Y., Bashan, Y., 2006. Journal of Microbiological Methods 64, 275–286. Carbon Cycle/Sequestration Benthic bacterial and fungal productivity and carbon turnover in a freshwater marsh Buesing, N., Gessner, M.O., 2006. Applied and Environmental Microbiology 72, 596–605. Investigation of carbon sequestration via induced calcite formation in natural gas well brine Druckenmiller, M.L., Maroto-Valer, M.M., Hill, M., 2006. Energy & Fuels 20, 172–179. Role of river-suspended material in the global carbon cycle ´ . 2006. Geology 34, 49–52. Gislason, S.R., Oelkers, E.H., Snorrason, A Methane emissions from terrestrial plants under aerobic conditions Keppler, F., Hamilton, J.T.G., Braß, M., Ro¨ckmann, T., 2006. Nature 439, 187–191. Learning about the carbon cycle from global budget data Melnikov, N.B., O’Neill, B.C., 2006. Geophysical Research Letters 32, Citation No. L02705. Coal/Peat/Lignite Geochemistry Palaeoenvironmental conditions of the Mavropigi lignites, Ptolemais Basin, Greece: a petrological study Antoniadis, P., Mavridou, E., Papazisimou, S., Christanis, K., Gentzis, T., 2006. Energy Sources 28, 311–327. Petrographic characteristics of the Kardia lignites (Core KT6A-3), Ptolemais Basin (Greece) Antoniadis, P., Mavridou, E., Papazisimou, S., Christanis, K., Gentzis, T., 2006. Energy Sources 28, 373–388. Investigation of high-pressure selective adsorption/desorption behaviour of CO2 and CH4 on coals: An experimental study Busch, A., Gensterblum, Y., Krooss, B.M., Siemons, N., 2006. International Journal of Coal Geology 66, 53–68.
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Humic substances and nitrogen-containing compounds from low rank brown coals Demirbas, A., Kar, Y., Deveci, H., 2006. Energy Sources 28, 341–351. A comparison of primary lignite structure as determined by pyrolysis techniques with chemical characteristics determined by other methods Fei, Y., Giroux, L., Marshall, M., Jackson, W.R., MacPhee, J.A., Charland, J.-P., Chaffee, A.L., 2006. Fuel 85, 998–1003. Comment on and addenda to ‘‘Arsenic in coal: A review’’ by Yudovich and Ketris Huggins, F.E., Huffman, G.P., 2006. International Journal of Coal Geology 66, 148–150. Structural response of coal to drying and pentane sorption Kelemen, S.R., Kwiatek, L.M., Siskin, M., Lee, A.G.K., 2006. Energy & Fuels 20, 205–213. Steric effects on diffusion into bituminous coals Larsen, J.W., Lee, D., 2006. Energy & Fuels 20, 257–261. A review of the timing of coalification in the light of coal seam erosion, clastic dykes and coal clasts Pesˇek, J., Sy´korova´, I., 2006. International Journal of Coal Geology 66, 13–34. Errors in CO2 adsorption measurements caused by coal swelling Romanov, V.N., Goodman, A.L., Larsen, J.W., 2006. Energy & Fuels 20, 415–416. Burial history and thermal maturity assessment of Upper Cretaceous–Lower Tertiary formations in the C ¸ ankIrI Basin, Turkey TokatlI, K., Demirel, I.H., Karayigit, A.I., 2006. International Journal of Coal Geology 66, 35–52. Coal rank distribution and implications for structural and geothermal controls on coalification; case study from the Cevennes Basin, Massif Central, France Wang, H., Zhuang, X., 2006. International Journal of Coal Geology 66, 1–12. A comparative study of experimental maturation of peat, brown coal and subbituminous coal: Implications for coalification Yao, S., Xue, C., Hu, W., Cao, J., Zhang, C., 2006. International Journal of Coal Geology 66, 108–118. Geochemistry and mineralogy of the Cretaceous Wulantuga high-germanium coal deposit in Shengli coal field, Inner Mongolia, Northeastern China Zhuang, X., Querol, X., Alastuey, A., Juan, R., Plana, F., Lopez-Soler, A., Du, G., Martynov, V.V., 2006. International Journal of Coal Geology 66, 119–136. Cosmochemistry Carbonaceous chondrites: tracers of the prebiotic chemical evolution of the Solar System Andersen, A.C., Haack, H., 2005. International Journal of Astrobiology 4, 13–17.
Environmental Geochemistry State of the art in the determination of MTBE in natural waters and soils Atienza, J., Aragon, P., Herrero, M., Puchades, R., Maquieira, A., 2005. Critical Reviews in Analytical Chemistry 35, 317–337. Response to Schwartz’s comments on ‘‘Comparison of mussels and semi-permeable membrane devices as intertidal monitors of polycyclic aromatic hydrocarbons at oil spill sites (Boehm et al., 2005)’’ Boehm, P.D., Page, D.S., Brown, J.S., Neff, J.M., Bence, A.E., 2006. Marine Pollution Bulletin 52, 122.
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Competitive effects of natural organic matter: Parametrization and verification of the three-component adsorption model COMPSORB Ding, L., Marin˜as, B.J., Schideman, L.C., Snoeyink, V.L., Li, Q., 2006. Environmental Science & Technology 40, 350–356. Stochastic analysis of nonlinear biodegradation in regimes controlled by both chromatographic and dispersive mixing Janssen, G.M.C.M., Cirpka, O.A., van der Zee, S.E.A.T.M., 2006. Water Resource Research 42, Citation No. W01417. Stratigraphy of wood-derived sterols in sediments historically contaminated by pulp and paper mill effluents Lahdelma, I., Oikari, A., 2006. Journal of Paleolimnology 35, 323–334. Integration of biodegradation half-life model and oil toxicity model into a diagnostic tool for assessing bioremediation technology Onwurah, l.N.E., Alumanah, E.E., 2005. Industrial Biotechnology 1, 292–296. Conditioning-annealing studies of natural organic matter solids linking irreversible sorption to irreversible structural expansion Sander, M., Lu, Y., Pignatello, J.J., 2006. Environmental Science & Technology 40, 170–178. Comment on ‘‘Comparison of mussels and semi-permeable membrane devices as inter-tidal monitors of polycyclic aromatic hydrocarbons at oil spill sites (Boehm et al., 2005)’’ Schwartz, R.M., 2006. Marine Pollution Bulletin 52, 121. Can microbial mineralization be used to estimate microbial availability of organic contaminants in soil? Semple, K.T., Dew, N.M., Doick, K.J., Rhodes, A.H., 2006. Environmental Pollution 140, 164–172. Effect of bioaugmentation and supplementary carbon sources on degradation of polycyclic aromatic hydrocarbons by a soil-derived culture van Herwijnen, R., Joffe, B., Ryngaert, A., Hausner, M., Springael, D., Govers, H.A.J., Wuertz, S., Parsons, J.R., 2006. FEMS Microbiology Ecology 55, 122–135.
Evolution/Paleontology/Palynology 1.3 Billion years of acritarch history: An empirical morphospace approach Huntley, J.W., Xiao, S., Kowalewski, M., 2006. Precambrian Research 144, 52–68. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA Poinar, H.N., Schwarz, C., Qi, J., Shapiro, B., MacPhee, R.D.E., Buigues, B., Tikhonov, A., Huson, D.H., Tomsho, L.P., Auch, A., Rampp, M., Miller, W., Schuster, S.C., 2006. Science 311, 392–394. Discovery of an ornithurine bird and its implication for Early Cretaceous avian radiation Zhou, Z., Zhang, F., 2005. Proceedings of the National Academy of Sciences USA 102, 18998–19002.
Evolution: Origins of Life/Microbial Genomics Effect of metallic cations on the efficiency of DNA amplification. Implications for nucleic acid replication during early stages of life Arribas, M., de Vicente, A., Arias, A., La´zaro, E., 2005. International Journal of Astrobiology 4, 115–123. Theoretical study of prebiotic precursors: the peptide bond and its silicon, sulphur and phosphorous analogues Chiaramello, J.M., Talbi, D., Berthier, G., Ellinger, Y., 2005. International Journal of Astrobiology 4, 125–133.
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Essential genes of a minimal bacterium Glass, J.I., Assad-Garcia, N., Alperovich, N., Yooseph, S., Lewis, M.R., Maruf, M., Hutchison, C.A., III, Smith, H.O., Venter, J.C., 2006. Proceedings of the National Academy of Sciences USA 103, 425–430. Modelling the dynamics of a minimal protocell container Jacobi, M.N., Steen, R., Tunstrøm, K., 2005. International Journal of Astrobiology 4, 81–91. Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses Khayat, R., Tang, L., Larson, E.T., Lawrence, C.M., Young, M., Johnson, J.E., 2005. Proceedings of the National Academy of Sciences USA 102, 18944–18949. Tidal chain reaction and the origin of replicating biopolymers Lathe, R., 2005. International Journal of Astrobiology 4, 19–31. Relicts and models of the RNA world Lehto, K., Karetnikov, A., 2005. International Journal of Astrobiology 4, 33–41. Prebiotic formation of polyamino acids in molten urea Mita, H., Nomoto, S. Terasaki, M., Shimoyama, A., Yamamoto, Y., 2005. International Journal of Astrobiology 4, 145–154. Spatial dynamics of homochiralization Multama¨ki, T., Brandenburg, A., 2005. International Journal of Astrobiology 4, 75–80. Abiotic synthesis of organic compounds from carbon disulfide under hydrothermal conditions Rushdi, A.I., Simoneit, B.R.T., 2005. Astrobiology 5, 749–769. Chirality in the RNA world and beyond Sandars, P.G.H., 2005. International Journal of Astrobiology 4, 49–61. Hydrogen-based carbon fixation in the earliest known photosynthetic organisms Tice, M.M., Lowe, D.R., 2006. Geology 34, 37–40. Origin of homochirality in biological systems Toxvaerd, S., 2005. International Journal of Astrobiology 4, 43–48. Chiral polymerization and the RNA world Wattis, J.A.D., Coveney, P.V., 2005. International Journal of Astrobiology 4, 63–73. Origins of DNA: Base invaders Whitfield, J., 2006. Nature 439, 130–131 Geology Mineralogy, crystallinity and stable isotopic composition of illitic clays within the Polish Zechstein Basin: implications for the genesis of Kupferschiefer mineralization Bechtel, A., Shieh, Y.-N., Elliott, W.C., Oszczepalski, S., Hoernes, S., 2000. Chemical Geology 163, 189– 205. Lanthanoids, actinoids, and mineral assemblages in bitumen of the Siberian Platform Gottikh, R.P., Pisotsky, B.I., 2005. Doklady Earth Sciences 405, 1209–1216. A cold-sealing capsule design for synthesis of fluid inclusions and other hydrothermal experiments in a pistoncylinder apparatus Hack, A.C., Mavrogenes, J.A., 2006. American Mineralogist 91, 203–210.
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Hydrates Natural gas hydrate dissociation by presence of ethylene glycol Fan, S., Zhang, Y., Tian, G., Liang, D., Li, D., 2006. Energy & Fuels 20, 324–326. Raman spectroscopic measurements of synthetic gas hydrates in the ocean Hester, K.C., White, S.N., Peltzer, E.T., Brewer, P.G., Sloan, E.D., 2006. Marine Chemistry 98, 304–314. Passing gas through the hydrate stability zone at southern Hydrate Ridge, offshore Oregon Liu, X., Flemings, P.B., 2006. Earth and Planetary Science Letters 241, 211–226. Geophysical and geochemical signatures associated with gas hydrate-related venting in the northern Cascadia margin Riedel, M., Novosel, I., Spence, G.D., Hyndman, R.D., Chapman, R.N., Solem, R.C., Lewis, T., 2006. Geological Society of America Bulletin 118, 23–38. Isotope Geochemistry Iron isotope fractionation during microbially stimulated Fe(II) oxidation and Fe(III) precipitation Balci, N., Bullen, T.D., Witte-Lien, K., Shanks, W.C., Motelica, M., Mandernack, K.W., 2006. Geochimica et Cosmochimica Acta 70, 622–639. Temperature and its control of isotope fractionation by a sulfate-reducing bacterium Canfield, D.E., Olesen, C.A., Cox, R.P., 2006. Geochimica et Cosmochimica Acta 70, 548–561. Rapid uplift of the Altiplano revealed through 13C–18O bonds in paleosol carbonates Ghosh, P., Garzione, C.N., Eiler, J.M., 2006. Science 311, 511–515. Cenozoic evolution of the sulfur cycle: Insight from oxygen isotopes in marine sulfate Turchyn, A.V., Schrag, D.P., 2006. Earth and Planetary Science Letters 241, 763–779.
Microbiology/Extremophiles – Microbial Ecology Diversity of naphthalene-degrading bacteria from a petroleum contaminated soil Alquati, C., Papacchini, M., Riccardi, C., Spicaglia, S., Bestetti, G., 2005. Annals of Microbiology 55, 237–242. Cretaceous black shales as active bioreactors: A biogeochemical model for the deep biosphere encountered during ODP Leg 207 (Demerara Rise) Arndt, S., Brumsack, H.-J., Wirtz, K.W., 2006. Geochimica et Cosmochimica Acta 70, 408–425. Isolation and characterization of biosurfactant/bioemulsifier-producing bacteria from petroleum contaminated sites Batista, S.B., Mounteer, A.H., Amorim, F.R., Totola, M.R., 2006. Bioresource Technology 97, 868– 875. Growth and starvation of a strain of Klebsiella pneumoniae isolated from a Brazilian oil formation Bossolan, N.R.S., Godinho, M.J.L., Volpon, A.G.T., 2005. World Journal of Microbiology and Biotechnology 21, 1471–1475. Diversity of microorganisms in Fe–As-rich acid mine drainage waters of Carnoule`s, France Bruneel, O., Duran, R., Casiot, C., Elbaz–Poulichet, F., Personne´, J.-C., 2006. Applied and Environmental Microbiology 72, 551–556. Isolation and characterization of phenanthrene-degrading bacteria from a petroleum refinery soil Coral, G., Karago¨z, S., 2005. Annals of Microbiology 55, 255–260.
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Community genomics among stratified microbial assemblages in the ocean’s interior DeLong, E.F., Preston, C.M., Mincer, T., Rich, V., Hallam, S.J., Frigaard, N.-U., Martinez, A., Sullivan, M.B., Edwards, R., Brito, B.R., Chisholm, S.W., Karl, D.M., 2006. Science 311, 496–503. Applying a most probable number method for enumerating planktonic, dissimilatory, ammonium-producing, nitrate-reducing bacteria in oil field waters Eckford, R.E., Fedorak, P.M., 2005. Canadian Journal of Microbiology 51, 725–729. Spatial variations of methanotrophic consortia at cold methane seeps: implications from a high-resolution molecular and isotopic approach Elvert, M., Hopmans, E.C., Treude, T., Boetius, A., Suess, E., 2005. Geobiology 3, 195–209. Metabolically active Crenarchaeota in Altamira Cave Gonzalez, J., Portillo, M., Saiz-Jimenez, C., 2006. Naturwissenschaften 93, 42–45. Microbial communities in wetlands of the Athabasca oil sands: genetic and metabolic characterization Hadwin, A.K.M., Del Rio, L.F., Pinto, L.J., Painter, M., Routledge, R., Moore, M.M., 2006. FEMS Microbiology Ecology 55, 68–78. Predicting microbial species richness Hong, S.-H., Bunge, J., Jeon, S.-O., Epstein, S.S., 2006. Proceedings of the National Academy of Sciences USA 103, 117–122. Selective phylogenetic analysis targeted at 16S rRNA genes of thermophiles and hyperthermophiles in deepsubsurface geothermal environments Kimura, H., Sugihara, M., Kato, K., Hanada, S., 2006. Applied and Environmental Microbiology 72, 21–27. The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration Knief, C., Kolb, S., Bodelier, P.L.E., Lipski, A., Dunfield, P.F., 2006. Environmental Microbiology 8, 321–333. Soil microbial communities: Influence of geographic location and hydrocarbon pollutants Maila, M.P., Randima, P., Dronen, K., Cloete, T.E., 2006. Soil Biology and Biochemistry 38, 303–310. Microbial biogeography: putting microorganisms on the map Martiny, J.B.H., Bohannan, B.J.M., Brown, J.H., Colwell, R.K., Fuhrman, J.A., Green, J.L., Horner-Devine, M.C., Kane, M., Krumins, J.A., Kuske, C.R., Morin, P.J., Naeem, S., Ovreas, L., Reysenbach, A.-L., Smith, V.H., Staley, J.T., 2006. Nature Reviews Microbiology 4, 102–112. Methanogen communities along a primary succession transect of mire ecosystems Merila¨, P., Galand, P.E., Fritze, H., Tuittila, E.-S., Kukko-oja, K., Laine, J., Yrja¨la¨, K., 2006. FEMS Microbiology Ecology 55, 221–229. Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA Meyer-Dombard, D.R., Shock, E.L., Amend, J.P., 2005. Geobiology 3, 211–227. Effect of inhibition of acetoclastic methanogenesis on growth of archaeal populations in an anoxic model environment Penning, H., Conrad, R., 2006. Applied and Environmental Microbiology 72, 178–184. Use of different methods for detection of thermophilic biosurfactant-producing bacteria from hydrocarbon-contaminated and bioremediated soils Plaza, G.A., Zjawiony, I., Banat, I.M., 2006. Journal of Petroleum Science and Engineering 50, 71–77. Molecular characterization of an oil-degrading cyanobacterial consortium Sa´nchez, O., Diestra, E., Esteve, I., Mas, J., 2005. Microbial Ecology 50, 580–588.
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Microorganisms in the Malan ice core and their relation to climatic and environmental changes Yao, T., Xiang, S., Zhang, X., Wang, N., Wang, Y., 2005. Global Biogeochemistry Cycles 20, Citation No. GB1004. Identification and kinetic characteristics of an indigenous diesel-degrading Gordonia alkanivorans Strain Young, C.-C., Lin, T.-C., Yeh, M.-S., Shen, F.-T., Chang, J.-S., 2005. World Journal of Microbiology and Biotechnology 21, 1409-1414. Paleoclimatology/Palaeoceanography The Late Eocene 187Os/188Os excursion: Chemostratigraphy, cosmic dust flux and the Early Oligocene glaciation Dalai, T.K., Ravizza, G.E., Peucker-Ehrenbrink, B., 2006. Earth and Planetary Science Letters 241, 477–492. A late Miocene dust shower from the break-up of an asteroid in the main belt Farley, K.A., Vokrouhlicky, D., Bottke, W.F., Nesvorny, D., 2006. Nature 439, 295–297. Stratigraphic distribution of macerals and biomarkers in the Donets Basin: Implications for paleoecology, paleoclimatology and eustacy Izart, A., Sachsenhofer, R.F., Privalov, V.A., Elie, M., Panova, E.A., Antsiferov, V.A., Alsaab, D., Rainer, T., Sotirov, A., Zdravkov, A., Zhykalyak, M.V., 2006. International Journal of Coal Geology 66, 69–107. Orbitally driven insolation forcing on Holocene climate trends: Evidence from alkenone data and climate modeling Lorenz, S.J., Kim, J.-H., Rimbu, N., Schneider, R.R., Lohmann, G., 2006. Paleoceanography 21, Citation No. PA1002. Record of palaeoenvironmental changes in a Lower Permian organic-rich lacustrine succession: Integrated sedimentological and geochemical study of the Rudnik member, Krkonose Piedmont Basin, Czech Republic Martinek K., Blecha M., Daneˇk V., Francu˚ J., Hladı´kova´ J., Johnova R., Ulicˇny´ D., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 85–128. Abrupt reversal in ocean overturning during the Palaeocene/Eocene warm period Nunes, F., Norris, R.D., 2006. Nature 439, 60–63. Assessing mechanisms of environmental change: Palynological signals across the Late Ludlow (Silurian) positive isotope excursion (d13C, d18O) on Gotland, Sweden Stricanne, L., Munnecke, A., Pross, J., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 1–31. Isotopic and faunal record of high paleotemperatures in the Kimmeridgian of the subpolar Urals Zakharov, V.A., Baudin, F., Dzyuba, O.S., Daux, V., Zverev, K.V., Renard, M., 2005. Geologiya I Geofizika (Russian Geology and Geophysics) 46, 3–20. Paleoecology of Extinction Events Extinction cascades and catastrophe in ancient food webs Roopnarine, P.D., 2006. Paleobiology 32, 1–19. Precambrian Geochemistry Preservation of ~3.4–3.5 Ga microbial biomarkers in pillow lavas and hyaloclastites from the Barberton Greenstone Belt, South Africa Banerjee, N.R., Furnes, H., Muehlenbachs, K., Staudigel, H., de Wit, M., 2006. Earth and Planetary Science Letters 241, 707–722.
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Comment on ‘‘A Hydrogen-Rich Early Earth Atmosphere’’ Catling, D.C., 2006. Science 311, 38. Hf isotopes of the 3.8 Ga zircons in eastern Hebei Province, China: Implications for early crustal evolution of the North China Craton Fuyuan, W., Jinhui, Y., Xiaoming, L., Tiesheng, L., Liewen, X., Yueheng, Y., 2006. Chinese Science Bulletin 50, 2473–2480. The 3.26-3.24 Ga Barberton asteroid impact cluster: Tests of tectonic and magmatic consequences, Pilbara Craton, Western Australia Glikson, A., Vickers, J., 2006. Earth and Planetary Science Letters 241, 11–20. Middle Archean volcano-hydrothermal sequence: Bacterial microfossil-bearing 3.2 Ga Dixon Island Formation, coastal Pilbara terrane, Australia Kiyokawa, S., Ito, T., Ikehara, M., Kitajima, F., 2006. Geological Society of America Bulletin 118, 3–22. The potential significance of microbial Fe(III) reduction during deposition of Precambrian banded iron formations Konhauser, K.O., Newman, D.K., Kappler, A., 2005. Geobiology 3, 167–177. Chemical composition of seawater in Neoproterozoic: Results of fluid inclusion study of halite from Salt Range (Pakistan) and Amadeus Basin (Australia) Kovalevych, V.M., Marshall, T., Peryt, T.M., Petrychenko, O.Y., Zhukova, S.A., 2006. Precambrian Research 144, 39–51. Response to Comment on ‘‘Iron Isotope Constraints on the Archean and Paleoproterozoic Ocean Redox State’’ Rouxel, O.J., Bekker, A., Edwards, K.J., 2006. Science 311, 177. Weathering of quartz as an Archean climatic indicator Sleep, N.H., Hessler, A.M., 2006. Earth and Planetary Science Letters 241, 594–602. Response to Comment on ‘‘A Hydrogen-Rich Early Earth Atmosphere’’ Tian, F., Toon, O.B., Pavlov, A.A., 2006. Science 311, 38. Comment on ‘‘Iron Isotope Constraints on the Archean and Paleoproterozoic Ocean Redox State’’ Yamaguchi, K.E., Ohmoto, H., 2006. Science 311, 177. Evaporite sedimentation in the Precambrian as related to changes in biosphere and seawater chemistry, Article 1: evaporites of the Archean and Lower Proterozoic Zharkov, M.A., 2005. Stratigraphy and Geological Correlation 13, 134–142.
Petroleum/Source Rock Geochemistry Reply to ‘‘Origin, sequence stratigraphy and depositional environment of an upper Ordovician (Hirnantian) deglacial black shale, Jordan’’ Armstrong, H.A., Turner, B.R., Makhlouf, I.M., Weedon, G.P., Williams, M., Al Smadi, A., Abu Salah, A., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 356–360. Experimental study and modeling of the role of hydronaphthalenics on the thermal stability of hydrocarbons under laboratory and geological conditions Burkle´-Vitzthum, V., Michels, R., Bounaceur, R., Marquaire, P.-M., Scacchi, G., 2005. Industrial & Engineering Chemistry Research 44, 8972–8987. Petroleum expulsion Part 1. Theory of kerogen swelling in multicomponent solvents Ertas, D., Kelemen, S.R., Halsey, T.C., 2006. Energy & Fuels 20, 295–300.
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Geographical classification of crude oils by Kohonen self-organizing maps Fonseca, A.M., Biscaya, J.L., Aires-de-Sousa, J., Lobo, A.M., 2006. Analytica Chimica Acta 556, 374– 382. Reconnaissance of soil gas composition over the buried fault and fracture zone in southern Taiwan Fu, C.-C., Yang, T.F., Walia, V., Chen, C.-H., 2005. Geochemical Journal 39, 427–439. Origin and distribution of coalbed gases from the Velenje Basin, Slovenia Kanduc, T., Pezdic, J., 2005. Geochemical Journal 39, 397–409. Petroleum expulsion Part 2. Organic matter type and maturity effects on kerogen swelling by solvents and thermodynamic parameters for kerogen from Regular Solution Theory Kelemen, S.R., Walters, C.C., Ertas, D., Kwiatek, L.M., Curry, D.J., 2006. Energy & Fuels 20, 301– 308. Petroleum expulsion Part 3. A model of chemically driven fractionation during expulsion of petroleum from kerogen Kelemen, S.R., Walters, C.C., Ertas, D., Freund, H., Curry, D.J., 2006. Energy & Fuels 20, 309–319. Liquid chromatographic determination of vanadium in petroleum oils and mineral ore samples using 2-acetylpyridne-4-phenyl-3-thiosemicarbazone as derivatizing reagent Khuhawar, M.Y., Arain, G.M., 2006. Talanta 68, 535–541. Kerogen chemistry. 8. Hydrous pyrolysis of Rundle kerogen: source of the oxygen in CO2 and mineral catalysis Larsen, J.W., Hu, J., 2006. Energy & Fuels 20, 278–280. Speciation analysis of volatile and non-volatile vanadium compounds in Brazilian crude oils using high-resolution continuum source graphite furnace atomic absorption spectrometry Lepri, F.G., Welz, B., Borges, D.L.G., Silva, A.F., Vale, M.G.R., Heitmann, U., 2006. Analytica Chimica Acta 558, 195–200. Origin, sequence stratigraphy and depositional environment of an Upper Ordovician (Hirnantian) deglacial black shale, Jordan–Discussion Luning, S., Loydell, D.K., Storch, P., Shahin, Y., Craig, J., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 352–355. Identification of alkyl carbazoles and alkyl benzocarbazoles in Brazilian petroleum derivatives Oliveira, E.C., Vaz de Campos, M.C., Rodrigues, M.R.A., Pe´rez, V.F., Melecchi, M.I.S., Vale, M.G.R., Zini, C.A., Carama˜o, E.B., 2006. Journal of Chromatography A 1105, 186–190. Depositional environments, organic maturity and petroleum potential of the Cretaceous coal-bearing Atane Formation at Qullissat, Nuussuaq Basin, West Greenland Pedersen, G.K., Andersen, L.A., Lundsteen, E.B., Petersen, H.I., Bojesen-Koefoed, J.A., Nytoft, H.P., 2006. Journal of Petroleum Geology 29, 3–26. The Miocene New Jersey passive margin as a model for the distribution of sedimentary organic matter in siliciclastic deposits Pellaton, C., Gorin, G.E., 2005. Journal of Sedimentary Research 75, 1011–1027. North Slope, Alaska: Source rock distribution, richness, thermal maturity, and petroleum charge Peters, K.E., Magoon, L.B., Bird, K.J., Valin, Z.C., Keller, M.A., 2006. American Association of Petroleum Geologists Bulletin 90, 261–292. Determination of asphaltene and resin content in Venezuelan crude oils by using fluorescence spectroscopy and partial least squares regression Riveros, L., Jaimes, B., Ranaudo, M.A., Castillo, J., Chirinos, J., 2006. Energy & Fuels 20, 227–230.
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Examination of an Oligocene lacustrine ecosystem using C and N stable isotopes Schweizer, M.K., Wooller, M.J., Toporski, J., Fogel, M.L., Steele, A., 2006. Palaeogeography, Palaeoclimatology, Palaeoecology 230, 335–351. Experimental investigation of single carbon compounds under hydrothermal conditions Seewald, J.S., Zolotov, M.Y., McCollom, T., 2006. Geochimica et Cosmochimica Acta 70, 446–460. Analysis of tert-butyldimethylsilyl derivatives in heavy gas oil from Brazilian naphthenic acids by gas chromatography coupled to mass spectrometry with electron impact ionization Vaz de Campos, M.C., Oliveira, E.C., Filho, P.J.S., Piatnicki, C.M.S., Carama˜o, E.B., 2006. Journal of Chromatography A 1105, 95–105. Deciphering biodegradation effects on light hydrocarbons in crude oils using their stable carbon isotopic composition: A case study from the Gullfaks oil field, offshore Norway Vieth, A., Wilkes, H., 2006. Geochimica et Cosmochimica Acta 70, 651–665. Identification and properties of mercury species in crude oil Wilhelm, S.M., Liang, L., Kirchgessner, D., 2006. Energy & Fuels 20, 180–186. Petroleum potential of the Cenomanian/Turonian boundary black shales in the Lower and Middle Antalya Nappes, Western Taurus region of Turkey Yurtsever, T.S., Demirel, I.H., 2006. Energy Sources 28, 299–309. Oil cracking: An important way for highly efficient generation of gas from marine source rock kitchen Zhao, W., Wang, Z., Zhang, S., Wang, H., Wang, Y., 2006. Chinese Science Bulletin 50, 2628–2635. Isotopic evidence of TSR origin for natural gas bearing high H2S contents within the Feixianguan Formation of the northeastern Sichuan Basin, southwestern China Zhu, G., Zhang, S., Liang, Y., Dia, J., Li, J., 2005. Science in China Series D-Earth Sciences 48, 1960– 1971. Production/Engineering Geochemistry Mesoscopic simulation of aggregation of asphaltene and resin molecules in crude oils Aguilera-Mercado, B., Herdes, C., Murgich, J., Mu¨ller, E.A., 2006. Energy & Fuels 20, 327–338. Molecularly explicit characterization model (MECM) for light petroleum fractions Albahri, T.A., 2005. Industrial & Engineering Chemistry Research 44, 9286–9298. Structure representation of asphaltene GPC fractions derived from Kuwaiti residual oils Ali, F., Ghaloum, N., Hauser, A., 2006. Energy & Fuels 20, 231–238. Calculation of the interaction potential curve between asphaltene–asphaltene, asphaltene–resin, and resin–resin systems using Density Functional Theory Alvarez-Ramirez, F., Ramirez-Jaramillo, E., Ruiz-Morales, Y., 2006. Energy & Fuels 20, 195–204. X-ray diffraction of subfractions of petroleum asphaltenes Andersen, S.I., Jensen, J.O., Speight, J.G., 2005. Energy & Fuels 19, 2371–2377. Fluid properties of asphaltenes at 310–530 °C Asprino, O.J., Elliott, J.A.W., McCaffrey, W.C., Gray, M.R., 2005. Energy & Fuels 19, 2026–2033. Interactions between synthetic and indigenous naphthenic acids and divalent cations across oil–water interfaces: effects of addition of oil-soluble non-ionic surfactants Brandal, Ø., Hanneseth, A.-M., Sjo¨blom, J., 2005. Colloid & Polymer Science 284, 124–133.
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Estimation of the solvent power of crude oil from density and viscosity measurements Correra, S., Merlini, M., Di Lullo, A., Merino-Garcia, D., 2005. Industrial & Engineering Chemistry Research 44, 9307–9315. Search for hydrocarbons by the method of induced seismoacoustic emission in wells Dryagin, V.V., Kuznetsov, O.L., Starodubtsev, A.A., Rok, V.E., 2005. Acoustical Physics 51, S54–S60. New approach to the characterisation of petroleum mixtures used in the modelling of separation processes Eckert, E., Vanek, T., 2005. Computers & Chemical Engineering 30, 343–356. Investigation of petroleum medium fractions and distillation residues from Brazilian crude oils by thermogravimetry Gonc¸alves, M.L.A., Ribeiro, D.A., da Mota, D.A.P., Teixeira, A.M.R.F., Teixeira, M.A.G., 2006. Fuel 85, 1151–1155. The effect of alkali on crude oil/water interfacial properties and the stability of crude oil emulsions Guo, J., Liu, Q., Li, M., Wu, Z., Christy, A.A., 2006. Colloids and Surfaces A: Physicochemical and Engineering Aspects 273, 213–218. Estimation of boiling and melting points of light, heavy and complex hydrocarbons by means of a modified group vector space method Li, H., Higashi, H., Tamura, K., 2006. Fluid Phase Equilibria 239, 213–222. Synergy of alkali and surfactant in emulsification of heavy oil in brine Liu, Q., Dong, M., Yue, X., Hou, J., 2006. Colloids and Surfaces A: Physicochemical and Engineering Aspects 273, 219–228. A modified Flory–Huggins model for prediction of asphaltenes precipitation in crude oil Pazuki, G.R., Nikookar, M., 2006. Fuel 85, 1083–1086. Rheology of asphaltene-toluene/water interfaces Sztukowski, D.M., Yarranton, H.W., 2005. Langmuir 21, 11651–11658. Application of molecular simulation to calculate miscibility of a model asphaltene molecule Vicente, L., Soto, C.S., Horacio, Pacheco-Sa´nchez, H., Herna´ndez-Trujillo, J., Martinez-Magada´n, J.M., 2006. Fluid Phase Equilibria 239, 100–106.
Recent Sediments The determination of total dissolved free primary amines in seawater: Critical factors, optimized procedure and artefact correction Aminot, A., Ke´rouel, R., 2006. Marine Chemistry 98, 223–240. Polycyclic aromatic hydrocarbons fluxes during the past 50 years observed in dated sediment cores from Andean mountain lakes in Central South Chile Barra, R., Popp, P., Quiroz, R., Treutler, H.-C., Araneda, A., Bauer, C., Urrutia, R., 2006. Ecotoxicology and Environmental Safety 63, 52–60. Seasonal and spatial distribution of particulate organic matter (POM) in the Chukchi and Beaufort Seas Bates, N.R., Hansell, D.A., Bradley Moran, S., Codispoti, L.A., 2005. Deep Sea Research Part II: Topical Studies in Oceanography 52, 3324–3343. Optical properties of low molecular weight and colloidal organic matter: Application of the ultrafiltration permeation model to DOM absorption and fluorescence Belzile, C., Guo, L., 2006. Marine Chemistry 98, 183–196.
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Mechanisms for organic matter and phosphorus burial in sediments of a shallow, subtropical, macrophytedominated lake Brenner, M., Hodell, D., Leyden, B., Curtis, J., Kenney, W., Gu, B., Newman, J., 2006. Journal of Paleolimnology 35, 129–148. Comparative study on microphytobenthic pigments of muddy and sandy intertidal sediments of the Tagus estuary Cartaxana, P., Mendes, C.R., van Leeuwe, M.A., Brotas, V., 2006. Estuarine, Coastal and Shelf Science 66, 225–230. Microbial production, utilization, and enzymatic degradation of organic matter in the upper trophogenic layer in the pelagial zone of lakes along a eutrophication gradient Chro´st, R.J., Siuda, W., 2006. Limnology and Oceanography 51, 749–762. Seasonal trends in the abundance, composition and bioavailability of particulate and dissolved organic matter in the Chukchi/Beaufort Seas and Western Canada Basin Davis, J., Benner, R., 2005. Deep Sea Research Part II: Topical Studies in Oceanography 52, 3396–3410. Distribution and sources of organic carbon, nitrogen and their isotopes in sediments of the subtropical Pearl River estuary and adjacent shelf, Southern China Hu, J., Peng, P.a., Jia, G., Mai, B., Zhang, G., 2006. Marine Chemistry 98, 274–285. Fatty acid composition of surface sediments in the subtropical Pearl River estuary and adjacent shelf, Southern China Hu, J., Zhang, H., Peng, P.a., 2006. Estuarine, Coastal and Shelf Science 66, 346–356. Incorporation of aged dissolved organic carbon (DOC) by oceanic particulate organic carbon (POC): An experimental approach using natural carbon isotopes Hwang, J., Druffel, E.R.M., Bauer, J.E., 2006. Marine Chemistry 98, 315–322. A comparison of sedimentary aliphatic hydrocarbon distribution between the southern Okinawa Trough and a nearby river with high sediment discharge Jeng, W.-L., Huh, C.-A., 2006. Estuarine, Coastal and Shelf Science 66, 217–224. Lipids in hydrothermal sulfide ores from the 9°50’ N Field of the East Pacific Rise Lein, A.Y., Peresypkin, V.I., Bogdanov, A., Ivanov, M.V., 2005. Doklady Earth Sciences 405, 1231–1234. Sediment organic matter composition and dynamics in San Francisco Bay, California, USA: Seasonal variation and interactions between water column chlorophyll and the benthos Lesen, A.E., 2006. Estuarine, Coastal and Shelf Science 66, 501–512. Strong hydrographic controls on spatial and seasonal variability of dissolved organic carbon in the Chukchi Sea Mathis, J.T., Hansell, D.A., Bates, N.R., 2005. Deep Sea Research Part II: Topical Studies in Oceanography 52, 3245–3258. Determination of phospholipid fatty acid structures and stable carbon isotope compositions of deep-sea sediments of the Northwest Pacific, ODP site 1179 Mills, C.T., Dias, R.F., Graham, D., Mandernack, K.W., 2006. Marine Chemistry 98, 197–209. Stable isotope compositions of organic carbon and nitrogen of two mangrove stands along the Tanzanian coastal zone Muzuka, A.N.N., Shunula, J.P., 2006. Estuarine, Coastal and Shelf Science 66, 447–458. A comparison of non-hydrolytic methods for extracting amino acids and proteins from coastal marine sediments Nunn, B.L., Keil, R.G., 2006. Marine Chemistry 98, 31–42. Distribution of polycyclic aromatic hydrocarbons in riverine waters after Mediterranean forest fires Olivella, M.A., Ribalta, T.G., de Febrer, A.R., Mollet, J.M., de las Heras, F.X.C., 2006. Science of the Total Environment 355, 156–166.
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Nitrogen cycling in the sediments of Santa Barbara basin and Eastern Subtropical North Pacific: Nitrogen isotopes, diagenesis and possible chemosymbiosis between two lithotrophs (Thioploca and Anammox) – ‘‘riding on a glider’’ Prokopenko, M.G., Hammond, D.E., Berelson, W.M., Bernhard, J.M., Stott, L., Douglas, R., 2006. Earth and Planetary Science Letters 242, 186–204. Short-term variation in behavior of allochthonous particulate organic matter accompanying changes of river discharge in Ise Bay, Japan Sugimoto, R., Kasai, A., Yamao, S., Fujiwara, T., Kimura, T., 2006. Estuarine, Coastal and Shelf Science 66, 267–279. Distribution and sources of organic matter in surficial sediments on the shelf and slope off Tokachi, western North Pacific, inferred from C and N stable isotopes and C/N ratios Usui, T., Nagao, S., Yamamoto, M., Suzuki, K., Kudo, I., Montani, S., Noda, A., Minagawa, M., 2006. Marine Chemistry 98, 241–259. Sources and transfer of organic matter in food webs of a Mediterranean coastal environment: Evidence for spatial variability Vizzini, S., Mazzola, A., 2006. Estuarine, Coastal and Shelf Science 66, 459–467. Changes in accumulation of organic matter and stable carbon and nitrogen isotopes in sediments of two Slovenian mountain lakes (Lake Ledvica and Lake Planina), induced by eutrophication changes Vreca, P., Muri, G., 2006. Limnology and Oceanography 51, 781–790. Soils Amino acids in grassland soils: Climatic effects on concentrations and chirality Amelung, W., Zhang, X., Flach, K.W., 2006. Geoderma 130, 207–217. Optimization of RP-HPLC analysis of low molecular weight organic acids in soil Ding, J., Wang, X., Zhang, T., Li, Q., Luo, M., 2006. Journal of Liquid Chromatography and Related Technologies 29, 99–112. The diversity and biogeography of soil bacterial communities Fierer, N., Jackson, R.B., 2006. Proceedings of the National Academy of Sciences USA 103, 626–631. Chemical composition of decomposing stumps in successive rotation of Chinese fir (Cunninghamia lanceolata (Lamb.) Hook.) plantations Huang, Z., Xu, Z., Boyd, S., Williams, D., 2006. Chinese Science Bulletin 50, 2581–2586. Organic marker compounds for surface soil and fugitive dust from open lot dairies and cattle feedlots Rogge, W.F., Medeiros, P.M., Simoneit, B.R.T., 2006. Atmospheric Environment 40, 27–49. Expanded compilations of references with abstracts in Microsoft Word and ISI EndNote formats are available at: http://www.eaog.org/other/ref_update.html