Vol. 78, No. 4, 1977
BIOCHEMICAL
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
ENZYME-BOUND EARLY PRODUCT OF PURIFIED POLY(ADP-RIBOSE) Koichiro
Yoshihara, Tomotaka Hashida, Hiroko Yasuharu Tanaka and Hajime Ohgushi
Department
Received
POLYMERASE
of Biochemistry, Kashihara, Nara,
Nara Medical Japan.
Yoshihara,
University,
June 16,1977 SUMMARY
Bovine thymus poly(ADP-ribose) polymerase with a purity of 99% on a SDS-polyacrylamide gel electrophoresis was able to initiate poly(ADP-ribose) synthesis without adding any exogenous acceptor protein to the reaction system. Analyses of the early reaction product synthesized without exogenous acceptor protein revealed that the product was oligo(ADP-ribose) with a mean chain length of 2.6 and was bound tightly to the enzyme protein. When the radioactive early reaction product was chased by incubating further with cold NAD+, ADP-ribose AMP-residue of the oligo(ADP-ribunit was found to be added to the terminal ose) attached to the enzyme. The stability of the early reaction product in high concentration of salt, strong acid, sodium dodecyl sulfate, and urea strongly suggests a covalent nature of the binding of oligo(ADP-ribose) to the enzyme. An enzyme which a homopolymer (l-3). gators(
of several
histones(
in cell
mechanism
investigated.
sence
its
the
ed that ribose
of
units
are
recent
protein
synthesis
of this
ADP-ribosylated
polymer
Copyright All rights
0
1977
of reproduction
SDS; sodium
by Academic in any
Press,
form
dodecyl
Inc. resenvd.
enzymes(l5,16). is ),
) has been reported. reaction
field
is
revealed
not yet that
chain,
protein-bound
we
ful-
the pre-
the enzyme reaction(26-28 initially
the
polymerase,
). suggest-
and additional
ADP-
ADP-ribose,
polymer(29). is
initiated
a purified enzyme, free of other nuclear an exogenous acceptor protein absolutely Abbreviations: ribosyl)-5'-AMP.
for
upto includ-
of DNA synthesis(lZ-21
of poly(ADP-ribose)
transferredto
a monomer
poly(ADP-ribose)
in this
investi-
proteins
and nuclear
polymerase
advances
of the
from
differentiation(25
a prerequisite is
successively
in an elongation
If the
is
ranging
control
of poly(ADP-ribose)
and elongation
some nuclear
resulting
in cell
system
initiation
in the
by other
to chromosomal ),
the enzyme,
involvement
However,
of DNA in the
As for
sizes,
is bound
proteins(l3,14
proliferation(ZZ-24)and
The precise ly
of various
role
understood,
has been determined
units,
), nonhistone
the biological
fully
moiety of NAD+ into poly(ADP-ribose), is found in mammalian cell nuclei
units,
polymer
ADP-ribose
7-12
Although not
ADP-ribose ADP-ribose
The structure of this 4-6). Poly(ADP-ribose)
a polymer ing
polymerizes
of repeating
sulfate,
exclusively
proteins, for the
as stated
above,
may be expected to require reaction. In spite of exten-
phosphoribosyl-AMP;
2'-(5"-phospho-
1281 ISSN
0006-2
91 ‘Y
Vol. 78, No. 4, 1977
sive for
purification,
however,
exogenous Recently
BIOCHEMICAL
poly(ADP-ribose)
to homogeneity(32).
In the present
polymerase
any exogenous (ADP-ribose)
the enzyme did
not show an absolute
requirement
acceptor(30,31).
we purified
(ADP-ribose)
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
acceptor bound
is able protein
polymerase study
we will
to initiate and that
from bovine show that
a purified
poly(ADP-ribose) the early
to the enzyme protein
product
by a covalent
almost poly-
synthesis
reaction
probably
thymus
without
is an oligolinkage.
MATERIALS AND METHODS Chemicals and enzymes. [Adenine-2,8-3H]NAD+ was purchased from New England Nuclear, Boston, USA. ADP-ribose, NAD+(grade 5), calf thymus whole histones (type 2), calf thymus DNA(type 1) and trypsin were products of Sigma. DNase I and snake venom phosphodiesterase were from Worthington Biochemical Corp., New Jersey, USA and pronase was the product of Calbiochem, San Diego, USA. Assay for protein and DNA. Protein and DNA were estimated by the methods of Lowry --et a1.(33) and Burton(34), respectively. Assay of poly(ADP-ribose) polymerase. The standard reaction mixture contained 25 mM Tris-HCl buffer,pH 8.0, 10 mM MgC12, 0.5 mM dithiothreitol, 10 YM [adenine-2,8-3H]NADf(25,000 cpm/nmole), 2 pg each of calf thymus DNA and calf thymus whole histones, and an appropriate amount of the enzyme in a total volume of 0.2 ml. The mixture was incubated at 25°C for 10 min. Other procedures were performed as described previously(35). One unit of the enzyme activity was defined as equivalent to one pmole of ADP-ribose incorporated into acidinsoluble material per min under described condition. For the preparation of the early reaction product, some ingredients of the reaction mixture, scale of the reaction and incubation time were changed as indicated in the experimental results. SDS-polyacrylamide gel electrophoresis. The gel electrophoresis and staining of protein band with amido black were performed according to Hayashi and Oba (36 ), with a slight modification of the method of Weber and Osborn(37). The gel was cut into 1.5 mm thickness and each disk of the gel was digested in 0.5 ml of 0.1 N NaOH in a counting vial at 37°C overnight and neutralized with 0.7 N HCl. After standing at 37°C for 2 hours,each sample was mixed with 6 ml of a xylene-based scintillator(O.7% diphenyloxazol, 0.003% POPOP and 25% triton X-114) and the radioactivity was counted by a liquid scintillation spectrophotometer. Preparation of poly(ADP-ribose) polymerase. Poly(ADP-ribose) polymerase was extracted from bovine thymus gland and purified to homogeneity by selective precipitation with ammonium sulfate and column chromatographies on DNA-cellulose, hydroxylapatite and sephadex G-200, successively. About 1,300-fold purification was achieved from the initial extract with a recovery of lo-20%. The molecular weight and the purity were estimated to be 130,000 and 99%, respectively, on analyses with SDS-polyacrylamide gel electrophoresis. The specific activity of the enzyme was 0.12-0.18 unit per mg. The maximum velocity estimated from the Lineweaver-Burk plot was 0.9-1.0 pmoles per min per mg protein. The details of the purification will appear elsewhere(32). RESULTS AND DISCUSSION Recently
we purified poly(ADP-ribose) polymerase from bovine thymus The purity of the enzyme was estimated to be around
homogeneity(32).
SDS-polyacrylamide the reaction. enzyme reaction.
gel As will
The enzyme
electrophoresis. be shown below,
Therefore,
DNA does
DNA seems to be required
1282
absolutely
not accept for
required ADP-ribose
almost to 99% by DNA for in the
the enzyme activation
Vol.78,No.4,
in this
1977
Nistones
system.
an optimal vate
BIOCHEMICAL
the
However,
reaction(28),
during
the purification(32)
out
adding
not
necessarily
correct,
These
the
role
possibilities or the
distinguish
are
and its were
tion
of poly(ADP-ribose)
1 JIM and the action
omitted
thus
l.,
as a single
peak
which
radioactivity
was found
sult
suggests
A possibility
that
which
coincided
Another is also
zyme
oligo(ADP-ribose)
elongating In order
further,
that
with
to confirm
trophoresis.
As shown
2,
a larger
cubating
it
activity
shifted
broadening the mobility polymer.
further
with toward
cold origin
In order
to confirm
material length
binding part
of the
not contain
complex to other
bound
with
to the
1283
this
conclusion,
en-
and the chain
later. product
and the
acid-insoluble
gel
enzyme elec-
radio-
the peak of the
a simultaneous
The results can be interpreted by the elongation of the bound
and extend
of
acceptor
as the enzyme protein, as product was chased by in-
as above,
and became broader
the
unpublished
by SDS-polyacrylamide of the
NAD' and analyzed
be an en-
in
of 2.6,
be shown
same position early reaction
of the enzyme band(Fig.2). of the enzyme is affected
did
14C]NADt(an
chain
The re-
to the enzyme.
experiment
is transfered
as will the
was found again at the exactly sharp peak. When the labeled
was found
of DNA.
product
is an intermediate
was analyzed
activity a single
re-
chromato-
applied
the material
radioactive
an average
product
in Fig.
that
ADP-ribose
and characterize reaction
The early
column
in the enzyme peak might
the material
incubation,
to
the region
by [carbonyl-
the
was decreased
No acid-insoluble
reaction
from a similar
which
because
on a prolonged
the early
material
from
unlikely
including
the sys-
the elonga-
set).
G-200
to
enzyme system
To simplify
time(20
ac-
In order
and to limit
radioactivity
by the fact
possibility
of this
of [~H]NAD+
are
without
product
as follows.
early
does
of many
considerations system.
the enzyme peak.
was replaced
in spite
synthesized
by sephadex
area
even with-
enzyme system
in this
mixture, a short
of the
of NAD+ as judged
molecules, is
with
binding
enzyme and ADP-ribose, is
for
in the other
[adenine-2,8-3H]NADt
result). the
analyzed
acid-insoluble
was excluded
moiety
reaction
was analyzed
the total
the
is
the concentration
the radioactive
zyme-NAD+complex, nicotinamide
purified
of the
the enzyme
activated
If these
reaction
was performed
in Fig.
strongly
were
from the
obtained
gra WY. As shown
our
when
activator from
of ADP-ribose
as an acceptor, an early
chain,
incubation
product
a potent separated
poly(ADP-ribose)
serves
properties
histones
that
further
DNA was used to acti-
the enzyme was fully
indicate
possibilities,
tem,
d(T),
DNA fraction
as an acceptor
either
two-fold
thymus
of histones(7-12,26-29).
enzyme itself
these
was prepared
facts
histones
about
calf
d(A)-poly
thymus
was used,
require for
dissolved
when poly
or a calf
histones.
suggestions
the reaction
of freshly
enzyme
ceptor
stimulated
concentration system.
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
the
shift
radioand a
as that ADP-ribose
two samples,
the
Vol. 78, No. 4, 1977
BIOCHEMICAL
IO
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
20
30
FRACTION
40
;; 22
50
NUMBER
Fig. 1. Sephadex G-200 column chromatography of early reaction product. Poly(AOP-ribose) polymerase(60 Ag) was incubated in the reaction mixture principally as described in methods except histones were omitted from the mixture and the amount of calf thymus DNA and the concentration of substrate were changed to contain 200~1g of DNA and 1 JJM [adenine-2,8-3H]NAD(125 cpm/ pmole), respectively, in a total volume of 2.0 ml. After the incubation at 25 "C for 20 seconds the reaction was terminated by the addition of 2 ml of STB (standard buffer for enzyme preparation, containing 50 mM Tris-HCl buffer, pH 7.4, 1 mM NaN3, 1 mM EOTA, 1 mM glutathione, 0.5 mM dithiothreitol) containing 2 M KCl, and 600 pg poly(ADP-ribose) polymerase was added to the mixture. The sample was put on a sephadex G-200 column(250 ml, 2.5X50 cm) preequilibrated with STB containing 1 M KC1 and eluted with the same buffer. Poly(ADP-ribose) polymerase activity and acid-insoluble radioactivity were measured and indicated by black and white columns, respectively. The position of molecular markers were determined by a parallel run of the column and indiDNA was measured by the absorbance at 260 nm and indicated cated by arrows. by a dotted line.
one obtained chase
from
experiment,
by a paper in Table as 5'-AMP
20 set-incubation were
treated
chromatography 1, about
and phosphoribosyl-AMP of AOP-ribose
After
the chase,
pare
the counts in the
in 5'-AMP
and phosphoribosyl-AMP, results
ADP-ribose indicate
that
of the oligo(ADP-ribose). duct,
calculated
of product
described in 5'-AMP
A and B in Table
of phosphoribosyl-AMP.
are
residues
a structure
known to be derived
of poly(ADP-ribose),
was recovered
indicating
the product
by other with
decreased(com-
a concomitant
The two compounds, from
the AMP-terminal
respectively(29).
is
investigators
is remarkably l),
the
As summarized
of each sample
the digestion,
from
and analyzed
to Yamada and Sugimura(38).
the radioactivity
radioactivity
NAD+ and the other
venom phosphodiesterase
radioactivity after
with
radioactive
snake
according
(4-6).
other
with
98% of the total
a homopolymer
increase
with
5'-AMP
and the Therefore,
the
the addition of ADP-ribose is occurring to the AMP-terminal The average chain length of the early reaction pro-
by the method
of Fujimura
1284
and Sugimura(39),
was 2.6.
This
BIOCHEMICAL
Vol. 78, No. 4, 1977
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
20
IO
30
40
SO
FRACTION AUllBEA
gel electrophoresis of early reaction products. Fig. 2. SDS-polyacrylamide Poly(ADP-ribose) polymerase was incubated in two tubes( tube A and B) in the legend to Fig. 1. except that the incubation condition as described in the of tube B was continued for additional 1 min after 0.5 pmole of cold NAD was added to the initial reaction mixture at 20 set, while the incubation of tube terminated by the addition of A was terminated at 20 sec. The reaction was Acid-insoluble material was collected by 0.5 ml of 40% trichloroacetic acid. centrifuging the sample at 40,000 g for 20 min, washed twice with 2 ml portion of ethanol/l50 mM Tris-HCl buffer(pH 7.4); Z/l(v/v) and dissolved in 0.2 ml of 1% SDS, 25% glycerol, 10 mM sodium phosphate buffer(pH 7.2). After storage at 0°C overnight, 50 ~'1 of 0.05% bromophenol blue was added to the mixtures on SDS-polyacryland two 50 ~1 aliquots of each sample were analyzed One of the two gels from each samamide gel columns as described in methods. ple was cut into 1.5 mm thickness and the radioactivity was measured. The other one was stained with amido black. Open and closed circles indicate the radioactivity of product A and B, respectively. A schematic illustration of the stained gels is shown on the top of this figure.
length
of oligo(ADP-ribose)
is not
acid-precipitable
without
binding
to other
macromolecules. All
these
of the the
results
reaction
is
precipitation
sephadex
fect
G-ZOO in the
bound
the oligo(AOP-ribose) to the
enzyme.
8% trichloroacetic presence
at 20-22°C.
the stability
(ADP-ribose)
that
too.
gel
A treatment These
to the enzyme Okayama --et al.
acid,
formed
The binding during
results
column of the strongly
in the product suggest
in an early was stable
buffer, presence with
step
during
the chromatography
of 1 M KC1 in the elution
on a polyacrylamide
hours
Recently
tightly with
electrophoresis several
indicate
on
or during
the
of 0.1% SDS for
5 M urea
the binding
did
not
af-
of oligo-
is covalent. (30 ) reported
that
1285
when the react ion product
of a poly
Vol. 78, No. 4, 1977
Table
1.
BIOCHEMICAL
Hydrolysis diesterase.
of early
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
reaction
products
with
total radioactivity analyzed(cpm)
phosphoribosylAMP(cpm)
A
102,000
61,800
38,300
B
147,000
141,000
4,200
product
snake
5'-AMP(cpm)
venom phospho-
average chain length(ADP-ribose unit) 2.6 ---
Product A and B were prepared under the conditions described in the legend ta Fig. 1 and Fig. 2. The acid-insoluble materials were dissolved in 0.2 ml of 0.7 N NaOH, incubated at 25'C for 30 min and neutralized by the addition of 20 ~1 of N HCJ. To each sample, 20 ~1 of M Tris-HCl buffer, pH 8.0, 2 ~1 of M MgCJ2, 10 ~1 of 10 mM 5'-AMP, and 20 pg of snake venom phosphodiesterase were added and the mixtures were incubated at 37°C. After the incubation for 1 hour, additional 30 yg of snake venom phosphodiesterase was added to each sample, and the mixtures were incubated further for two hours. Radioactive phosphoribosyl-AMP and 5'-AMP in the digested products were separated by a paper chromatography according to Yamada and Sugimura(38). Product A; early reaction product, product B; early reaction product chased with cold NAD.
(ADP-ribose) amide
polymerase
gel
electrophoresis,
associated they
with
presumed
on the gel
however,
(ADP-ribose) nature
remain early
(data
is not
reaction
product
lated
from
ratio
was about
0.1. before.
is directly
5'-AMP
and furthermore,
the average
pronase
or
the differences
bound
to the
acceptor
reaction
in table
found
that oligoenzyme,
with
non-
of the
reaction
when a small
amount
of the
chain
1286
was quite
limited
enzyme was incu-
a relatively long time, chain exceeded far that length(12-13
was calcu-
product
1, the product-enzyme
extent
bated in the standard reaction mixture for number of the synthesized poly(ADP-ribose) me,
stable of the
by trypsin
Though
a macromolecular
the observed
However,
fairly
our results suggest
of the earJy
of the terminal Thus
is
complex.
of oJigo(ADP-ribose)
the counts
one as expected
that
in this
fraction
proteinases.
electrophoresis
hydrolyzed
yet,
which
of this with
complex gel
to be
nature,
The mobility
shown).
to be cJarified
was found
of the product
was easily
by SDS-polyacryl
non-protein
upon a SDS-polyacrylamide
is involved
When the number
with
of ADP-ribose.
at least the possibility
excluding protein
in our
was analyzed
oligo(ADP-ribose)
by the treatment
material
two systems
liver
material
the complex
an acid-soluble
rat
the enzyme-oJigo(ADP-ribose)
as a unit
In addition,
in these
unidentified
to be an acceptor
and separable product.
from
the synthesized
a still
was not affected
In our system,
into
preparation
ADP-ribose
the total of the enunits)
remain-
0lOCHEMlCAl
Vol. 78, No. 4, 1977
ed almost crease
constant
during
in the total
The polymer
the
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
incubation
acid-insoluble
synthesized
counts
during
these
enzyme when the product
was analyzed
(unpublished
results).
Thus,
is
to some extent,
increased
new chain
the formation
the reaction,
is
that
a poly(ADP-ribose)
length
gel
from
the
electrophoresis
of the enzyme-bound the chain
polymer
and reinitiate
a
is
units
complex
protein
from
synthesized we do not
units
are
by a sequential, site
to the
have enough
step
the
intramolecular acceptor
site
evidences
of
enzyme
transferred The other
two enzyme molecules.
the catalytic
At present,
the early
The one is that
and ADP-ribose
between
in
one trans-
in the same
to distinguish
two possibilities.
As for dences
the role
of histones
have indicated nuclei
we could
that
or chromatin
direct
effect and the
as stated
above.
still
clarified.
not
A possibility these
(ADP-ribose)
they
synthesis
With
modifications of this
purified
abolished found
referred
purified
is that
enzyme, added
enzyme reaction in some conditions
in these
evi-
two sets
some factor
of however, The
histones.
seemed to be inof the
reaction,
of observations indispensable
is for
the
may be missing from our enzyme preparation Kristensen and Holtlund reported manuscript,
of poly(ADP-ribose) also
our
accumulated
on an incubation
of exogenously
on the
The discrepancy
purification in which
NAD*(7-10).
was almost
synthesis,
are ADP-ribosylated
ADP-ribosylation
the preparation
a partial
histones
of histones effect
enzyme to perform During
in poly(ADP-ribose)
with
not demonstrate
stimulatory
cells,
chain
results).
was separated
by SDS-polyacrylamide
may be conceivable.
and intermolecularly
enzyme molecule.
cell
incubation
of oligo(ADP-ribose)-enzyme
as an acceptor
of ADP-ribose
these
long-term the
of the in-
incorporated(unpublished
the enzyme may release
two mechanisms
can serve
sequentially fer
after
5 to 120 min in spite
synthesis.
As for itself
from
polymerase
to a possibility
from
Ehrlich
of an acceptor-free
ascites
tumor poly-
by the enzyme preparation(40). ACKNOWLEDGEMENT
The authors express their gratitude to Dr. T. Kamiya for his continued interest and encouragement through this study. This work was supported in part by a research grant No 101032 from the Ministry of Japan. REFERENCES 1. Chambon,P., Weill,J.D., and Mandel,P.(1963) Biochem. Biophys. Res. Commun., 11, 39-43. 2. Nishizuka,Y., Ueda,K., Nakazawa,K., and Hayaishi,O.(1967) J. Biol. Chem., 242, 3164-3171. 3. Fujimura,S., Hasegawa,S., Shimizu,Y., and Sugimura,T.(1967) Biochim. Biophys. Acta, 145, 247-259. 4. Chambon,P., Weill,J.D., Strosser,M.T., and Mandel,P.(1966) Biochem.Biophys. Res. Commun., 25, 638-643. 5. Reeder,R.H., Ueda,K., Honjo,T., Nishizuka,Y., and Hayaishi,U.(T967) J. Biol. Chem., 242, 3172-3179.
1287
Vol. 78, No. 4, 1977
BIOCHEMICAL
AND BIOPHYSICAL RESEARCH COMMUNICATIONS
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