Journal Pre-proof Myticusin-beta, antimicrobial peptide from the marine bivalve, Mytilus coruscus Ryunkyoung Oh, Min Jeong Lee, Young-Ok Kim, Bo-Hye Nam, Hee Jeong Kong, JuWon Kim, Jung-yeon Park, Jung-Kil Seo, Dong-Gyun Kim PII:
S1050-4648(20)30106-6
DOI:
https://doi.org/10.1016/j.fsi.2020.02.020
Reference:
YFSIM 6819
To appear in:
Fish and Shellfish Immunology
Received Date: 6 September 2019 Revised Date:
7 February 2020
Accepted Date: 12 February 2020
Please cite this article as: Oh R, Lee MJ, Kim Y-O, Nam B-H, Kong HJ, Kim J-W, Park J-y, Seo J-K, Kim D-G, Myticusin-beta, antimicrobial peptide from the marine bivalve, Mytilus coruscus, Fish and Shellfish Immunology (2020), doi: https://doi.org/10.1016/j.fsi.2020.02.020. This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. © 2020 Published by Elsevier Ltd.
1
Myticusin-beta, antimicrobial peptide from the marine bivalve,
2
Mytilus coruscus
3
4
Ryunkyoung Oha , Min Jeong Leea, Young-Ok Kima, Bo-Hye Nama, Hee Jeong Konga, Ju-
5
Won Kima, Jung-yeon Parka, Jung-Kil Seob and Dong-Gyun Kima *
6 a
7 8 9
Biotechnology Research Division, National Institute of Fisheries Science, Busan, 46083, Republic of Korea
b
Department of Food Science and Biotechnology, Kunsan National University, Kunsan
10
54150, Korea
11 12 13
*
Corresponding author
E-mail address:
[email protected] (D-G. Kim)
14
1
15
Abstract
16 17
We isolated and purified an antimicrobial peptide (AMP) from the mantle of the hard-
18
shelled mussel, Mytilus coruscus. The peptide was purified through C18 reversed-phase high-
19
performance liquid chromatography, and displayed antibacterial activity. Total molecular
20
mass of 11,182 Da was determined using matrix-assisted laser desorption ionization time-of-
21
flight mass spectrophotometry. The N-terminal 23-amino acid sequence of its purified peak
22
was obtained through Edman degradation, revealing 82% identity with myticusin-1 of M.
23
coruscus. Complete sequence of the target peptide was determined through cDNA cloning
24
and rapid amplification of cDNA ends. The complete sequence comprised 574 bp with a 387-
25
bp open reading frame (ORF) encoding 24 amino acids of a signal peptide and 104 amino
26
acids of a mature peptide, which was named myticusin-beta. Furthermore, we discovered two
27
novel isoforms of myticusin-beta. We constructed and expressed recombinant myticusin-beta,
28
which displayed antimicrobial activity against gram-positive (Bacillus cereus, Bacillus
29
subtilis, Clostridium perfringens, Staphylococcus aureus, Streptococcus iniae, Streptococcus
30
mutans) and gram-negative bacteria (Escherichia coli, Pseudomonas aeruginosa, Vibrio
31
alginolyticus, Klebsiella pneumoniae). Purified recombinant myticusin-beta also showed anti-
32
parasitic activity at various concentrations. A short AMP analog was designed and
33
synthesized based on the sequence of myticusin-beta, with markedly improved antimicrobial
34
activity. Expression of myticusin-beta was detected in the mantle at the highest level,
35
followed by hemocytes. The results obtained in this work suggest that myticusin-beta is an
36
immune-related AMP of M. coruscus and an effective alternative to antibiotics.
37
Key words: Antimicrobial peptide, Myticusin-beta, Mytilus coruscus, Purification 2
38
1. Introduction
39
Mollusks are a major phylum of marine invertebrates that include mussel, clam, oyster, and
40
scallop, which generally obtain nutrients from seawater through filter feeding. Among marine
41
mollusks, mussels attach to each other or to rocks with proteinaceous byssus in the middle of
42
the foot. They take up plankton and microorganisms along with water through two siphons,
43
the exhalant and inhalant siphons, because they cannot move. Nutritious organic materials
44
that enter the inhalant siphon are caught in the gill and aggregated with mucus, and then
45
move into the mouth. For these reasons, mollusks are exposed to microbe-rich conditions and
46
require effective immune systems to prevent microbial infections [1].
47
The acquired immune system of invertebrates such as mollusks is less developed, while
48
their innate immune system is well developed [2]. Therefore, they depend on innate immunity,
49
including both the cellular and humoral components, to defend themselves against pathogenic
50
microorganisms [3]. Innate immunity is the first line of the host defense system and does not
51
have specificity, so it inhibits the growth of invading microorganisms in body fluids
52
immediately after infection, before activation of the adaptive immune system or phagocytosis
53
[4]. Among defense systems, antimicrobial peptides (AMPs) act as the major components of
54
innate immunity in mollusks [5-8].
55
AMPs are host defense peptides and gene-encoded short oligopeptides (less than about 100
56
amino acids) with alpha-helix or beta-sheet folded structures, and are amphipathic molecules
57
containing hydrophobic and cationic amino acids that exhibit a broad spectrum of
58
antimicrobial activities against bacteria, fungi, parasites, and even certain enveloped viruses
59
[9-11]. The action of cationic AMPs depends on their secondary structure, overall net charge,
3
60
amphipathy, hydrophobicity, size, and the balance between hydrophobic and polar regions
61
[12,13]. AMPs are classified into membrane-targeting peptides and non-membrane-targeting
62
peptides according to the locations of their target molecules, such as the cell wall, membrane,
63
or cytoplasm [14].
64
Diverse AMPs have been isolated and characterized from different organisms. Despite
65
reports of antimicrobial activity against a several of pathogens with more than 1,000 AMPs,
66
studies on AMPs from marine mussels have included a few species. Identified AMPs from
67
mussels have been divided into eight groups: defensing [15], mytilin [16], myticin [17],
68
mytimycin [18], mytimacin [19], big defensing [19], mytichitin-CBD [20-22], and myticusin
69
[23]. Several AMPs have been purified and identified from marine mussels, particularly
70
Mytilus edulis and Mytilus galloprovincialis; however, very little research has been conducted
71
into the AMPs of Mytilus coruscus [1]. M. coruscus (also called hard-shelled mussel; family
72
Mytilidae) has long been cultured as a nutrient food in East Asia, and is economically
73
important in South Korea. AMPs from M. coruscus, including mytichitin-CBD and myticusin,
74
have been identified in hemolymph and foot extracts from M. coruscus [20,23]. These
75
peptides show strong antimicrobial activity against gram-positive bacteria and constitute an
76
important component of the innate immune defense system.
77
In this study, we isolated, purified, and characterized the AMP myticusin-beta from the
78
mantle of M. coruscus. Our results support myticusin-beta as an alternative material to
79
antibiotics and an immune system-related peptide.
4
80
81
2. Materials and methods
82
2.1. Tissue extraction
83
Hard-shell mussels (M. coruscus) were collected from a fisheries market in Busan, South
84
Korea, and gently washed with fresh water. We isolated and identified V. parahaemolyticus
85
from ark shell (Sapharca broughtonii) in previous study [24]. We cultured Vibrio
86
parahaemolyticus at 37℃ in Braine Heart Infusion (BHI) broth with 1% NaCl for overnight
87
and diluted to 104-105 CFU/mL. M. coruscus was artificially infected with 0.1 mL of diluted
88
Vibrio parahaemolyticus culture media injected into the adductor muscle through a sterile
89
needle. The mantle was isolated under aseptic conditions and boiled for 5 min with four
90
volumes of pre-heated 1% acetic acid (HAc). The boiled tissues were centrifuged (4,000 rpm,
91
30min, 4°C) and the supernatants were filtered through a 0.45-µm pore size syringe filter and
92
stored at −70°C until use.
93
94
2.2. Antimicrobial assessment via ultrasensitive radial diffusion assay
95
The gram-positive and gram-negative bacteria and fungi listed in Table 1 were used as
96
reference virulence microorganisms to confirm antibacterial activity through the
97
ultrasensitive radial diffusion assay (URDA) [25]. In total, 19 bacterial strains were incubated
98
with the appropriate broth and temperature for 18 h (Table 1). Reference bacteria and fungi
99
were diluted to the McFarland turbidity standard of 0.5, corresponding to about 108 CFU/mL
100
or 106 CFU/mL. Then, 0.5 mL of diluted microbial culture medium was added to 9.5 mL of 5
101
underlay gel containing 1.2% type I agarose, which was poured to 1-mm thickness of
102
underlay gel with 2.2-mm diameter wells. Samples were added to the wells and the bacterial
103
or fungal suspensions were overlaid with 10 mL of overlay gel containing 1.2% agarose and
104
10 mM phosphate buffer (pH 6.5). The clear zone was measured after incubation at 25, 30, or
105
37°C for 18 h.
106
107
2.3. High-performance liquid chromatography purification of peptides
108
The purification process was performed via reversed-phase (RP) high-performance liquid
109
chromatography (HPLC) using two types of RP columns: CapCell-Pak C18 RP (5 µm, 120Å,
110
4.6 x 250 mm; Shiseido, Japan) and TSK-gel ODS-80TM C18 RP columns (4.6 x 150 mm;
111
TOSOH BIOSCIENCE, Japan). First, acidified extract was injected into the CapCell-Pak C18
112
RP column with a gradient of 5–65% acetonitrile (ACN) in 0.1% trifluoroacetic acid (TFA)
113
over 60 min at a flow rate of 1.0 mL/min. Second, the collected fractions were applied to the
114
TSK-gel ODS-80TM C18 RP column with gradient of 5–65% ACN in 0.1% TFA over 1 h at a
115
flow rate of 1.0 mL/min. The eluted fractions were monitored at 220 nm and vacuum dried
116
for further characterization. Each eluted peak was tested against Bacillus subtilis (KCTC
117
1021) via URDA to confirm its antibacterial activity.
118
119
2.4. Digestion of purified peptide with protease
120
Finally, a single purified peak was incubated with 2 µL (1,000 µg/mL) of trypsin at 37°C
121
for 1 h to confirm the proteinaceous nature of the compound. Trypsin hydrolyzed the peptide 6
122
bonds and digested the protein into peptides at the carboxyl-terminal side of arginine and
123
lysine residues. After digestion, samples were incubated at 4°C to inactivate the trypsin. After
124
protease reaction, the single purified peak was subjected to URDA testing and its
125
antimicrobial activity was compared to that of the peptide without trypsin treatment.
126
127
2.5. Sequence identification of purified peptide
128
Matrix-assisted laser desorption ionization time-of-flight mass spectrophotometry
129
(MALDI-TOF/MS) with an Ultraflex III instrument (Bruker Daltonik GmbH, USA) was used
130
to determine the molecular weight of the purified peptide. The purified peptide was dissolved
131
in 1% TFA and 50% ACN (1:1,v/v) mixed with α-cyano-4-hydroxycinnamic acid (CHCA)
132
matrix solution (10 mg/mL CHCA in 0.1% TFA/50% ACN, 1:1,v/v) and loaded onto a
133
MALDI plate. The N-terminal amino acid sequence was obtained through the Edman
134
degradation method using a pulse liquid automatic sequencer.
135
136
2.6. RNA extraction, cDNA preparation, and nucleotide sequencing
137
RNA was extracted and purified from the mussel mantle using TRI reagent and the purity
138
of the extracted RNA was determined with a spectrophotometer (Nanovue plus, USA). cDNA
139
of myticusin-beta from M. coruscus was synthesized using the SMARTer® RACE 5′/3′ Kit
140
(TaKaRa, Japan) to determine the complete DNA sequence. Then, first-strand cDNA was
141
synthesized with poly(A) polymerase. The 5′-RACE-Ready cDNA synthesis reactions were
142
performed in a final volume of 11 µL containing 1.0 µL of RNA and 1.0 µL of 5′-DNS Primer 7
143
A. Meanwhile, the 3′-RACE-Ready cDNA synthesis reactions were performed in a final
144
volume of 12 µL containing 1.0 µL of RNA and 1.0 µL of 3′-DNS Primer A. Tubes were
145
incubated at 72°C for 3 min, and then cooled to 42°C for 2 min. Next, 1.0 µL of
146
oligonucleotide was added to the 5′-RACE cDNA synthesis reactions. Master Mix was added
147
to denatured RNA from the 5′- and 3′-RACE-Ready cDNA synthesis reactions, which were
148
then incubated at 42°C for 90 min after treatment at 70°C for 10 min. The 3′- and 5′-RACE-
149
Ready cDNA samples were stored at −20°C until use. Two gene-specific oligonucleotide
150
primers were designed and applied. (Myticusin-3RACE: 5’-GATTACGCCAAGCTT GAC
151
CAC
152
GATTACGCCAAGCTT TAT TGC GGA TGC ATA TGC IGC GTC TTG IGC-3’)
CAG
ATG
GCA CAG
TCG
GCC
TGC-3
and
Myticusin-5RACE:
5’-
153
Myticusin-beta was cloned into the pGEM® T-easy vector system (Promega, USA) and
154
transformed into Escherichia coli XL-1 blue chemically competent cells. The plasmid was
155
isolated and purified using the DNA-spin Plasmid Purification Kit (Intron, Korea), and its
156
sequence was analyzed with the 3130XL Genetic Analyzer (Applied Biosystems, USA). The
157
amino acid sequence obtained was submitted to the Basic Local Alignment Search Tool
158
(BLAST)
159
http://blast.ncbi.nlm.nih.gov/Blast). Sequences were aligned using BioEdit version 7.2.5 and
160
GENETYX version 4.0 for comparison and analysis. The theoretical molecular weight and pI
161
value of the purified peptide were evaluated using the ExPASy online tool
162
(http://www.expasy.org/rools/protparam.html).
from
the
National
Center
for
163 8
Biotechnology
Information
(NCBI,
164
2.7. Construction of recombinant plasmids
165
To construct the expression plasmid, the target gene was amplified using a sense BamHI-
166
linker primer (5’-GGATCC ATG TCA GAC CAT CAG ATG GCA -3’) and an antisense XhoI-
167
linker primer (5’-CTCGAG TTA AAC GAT ACA ACA GCA GAA GTT-3’) via polymerase
168
chain reaction (PCR). PCR was performed in a total volume of 50 µL containing 1.0 µL of
169
DNA template, 1× PCR buffer containing MgCl2, 0.2 mmol/L of dNTP, 0.6 U of Taq
170
polymerase, and 1.0 pmol of each primer. The reaction included 25 cycles of 1 min at 94°C, 1
171
min at 55°C, and 1 min at 72°C, followed by a final extension at 72°C for 7 min, using a
172
TP600 PCR thermal cycler (TaKaRa, Japan). The amplicon was confirmed through 1.5%
173
agarose gel electrophoresis and purified using the QIAquick® PCR Purification kit (Qiagen,
174
Germany). The final product was cloned into pET-28a(+)-thioredoxin A (TrxA) fusion vector
175
containing BamHI and XhoI sites, and the N-terminus was 6X His-tagged [26]. The
176
recombinant plasmid encoding the myticusin-beta gene was isolated and transformed into E.
177
coli DH5ɑ and BL21 (DE3) competent cells.
178
179
2.8. Expression and purification of the recombinant protein
180
Cells were incubated in Luria–Bertani (LB) liquid medium containing 50 µg/mL
181
kanamycin at 37°C until the optical density at 600 nm reached 0.4. The induction step was
182
initiated with isopropyl-D-1-thiogalactopyranoside (IPTG) at 37°C for 4 h. Cells were
183
centrifuged at 4,000 rpm for 30 min, after which the pellet was suspended in 50 mM Tris-HCl
184
buffer (pH 8.0). Suspended cells were crushed through sonication in an ice-water bath and
185
centrifuged at 12,000 rpm for 10 min at 4°C. The supernatants were subjected to Ni-NTA His 9
186
Bind® SuperflowTM purification (Millipore, USA). After purification, the eluted fraction was
187
dialyzed in 20 mM Tris-HCl buffer and analyzed using an EzWay-PAG gel (Koma Biotech,
188
Korea) with 10% aspartate buffer. The Bradford assay was conducted for quantitative
189
analysis of the purified target proteins. The antimicrobial activity of the purified recombinant
190
protein was tested against the strains listed above using the URDA method.
191
192
2.9. Western blotting
193
Samples were heated for 10 min at 100°C and separated with the EzWay-PAG gel system
194
for western blots. Results were obtained using the WesternBreeze® chromogenic
195
Immunodetection Kit (Invitrogen, USA) according to the manufacturer’s protocol. Gels were
196
washed and trans-blotted onto a nitrocellulose (NC) membrane at 15 V for 1 h. The NC
197
membrane was incubated with anti-His primary antibody (1:5000, Invitrogen, USA) and then
198
alkaline phosphatase-conjugated secondary antibodies for 1 h. Protein bands were developed
199
using a chromogenic substrate.
200
201
2.10. Hemolytic activity
202
Hemolytic activity was determined using olive flounder (Paralichthys olivaceus) blood
203
cells [27]. Olive flounder blood cells were collected and diluted with sodium phosphate
204
buffer (150 mM NaCl, 50 mM sodium phosphate pH 7.4) and then centrifuged at 5,000 rpm
205
and 4°C for 1 min. Blood cells were washed to collect red blood cells, excluding the buffy
206
coat and plasma. Next, 90 µL of 3% red blood cells in phosphate-buffered saline (PBS) was 10
207
mixed with 10 µL of sample and incubated at 37°C for 1 h.
208
Then, 100 µL of 3% red blood cells in PBS and sample was centrifuged at 5,000 rpm and
209
4°C for 1 min, after which 70 µL of the supernatant was injected into a 96-well plate.
210
Hemolysis was monitored by measuring the absorbance at 405 nm with a VICTOR3 1420
211
plate reader (PerkinElmer, USA). For this assay, 1% Triton X-100 and piscidin 1 (1 mg/mL)
212
were used as positive controls, and 0.01% HAc and PBS were used as negative controls. The
213
percentage of hemolytic activity was calculated as follows:
214
Hemolysis (%) = [(Abs405nm test − Abs405nm buffer) / (Abs405nm 1% Triton X-100 − Abs405nm
215
buffer)] × 100
216
217
2.11. Anti-scuticociliate assay
218
An anti-scuticociliate assay was carried out in 96-well flat bottom plates containing 106
219
cells/well at 20°C using the Premix WST-1 Cell Proliferation Assay Kit (Clontech, USA).
220
Recombinant proteins at concentrations of 12.5, 25, 50, 100, and 200 µg/mL were filtered
221
and evaluated in a final volume of 200 µL/well, and L-15 medium was used as a negative
222
control. Treated and untreated scuticociliates were analyzed in triplicate. After treatment, the
223
plates were incubated at 20°C for 1 h and viability was determined. After 4 h at 20°C, the
224
absorbance was read in an enzyme-linked immunosorbent assay reader (VICTOR3 1420,
225
Perkin Elmer, USA) at 450 nm. Values are expressed as the percentage of viable
226
scuticociliates after treatment. The morphology and motility of scuticociliates were
227
monitored through a digital microscope camera (DFC425C Leica, Germany).
11
228
229
2.12. Quantitative analysis of myticusin-beta expression
230
M. coruscus was challenged with V. parahaemolyticus, and tissue-specific expression
231
levels of myticusin-beta were determined through quantitative real-time PCR (qRT-PCR).
232
Total RNA was extracted from the adductor muscle, foot, gill, hemocytes, hepatopancreas,
233
mantle, and excurrent siphon using TRI Reagent. cDNA was synthesized with the
234
Transcriptor First Strand cDNA Synthesis Kit (Roche Life Science, Germany) and used as the
235
template. Amplification reactions were performed in a final volume of 20 µL containing 1.0
236
µL of diluted cDNA, 10 µL of 2× Fast SYBR Green Master Mix (Applied Biosystems, USA),
237
0.5 µL of each primer (10 pmol/µL), and 8 µL of distilled water using the following cycle
238
profile: 1 period of 95°C for 10 min, followed by 40 cycles at 95°C for 15 s, 55°C for 1 min,
239
and 72°C for 30 s in the ABI 7500 Real-time PCR System (Applied Biosystems, USA). The
240
melting curve was measured and analyzed to verify the appropriate specific amplification.
241
Expression levels were compared with 18S rRNA expression levels using the 2−∆∆Ct method
242
to obtain differences, and results are presented as relative expression levels (mean ± standard
243
deviation) [28].
244
245
2.13. Design and synthesis of peptide analogs of myticusin-beta
246
Analogs were designed to support the use of myticusin-beta as an antimicrobial compound,
247
which had reduced length for the rapid diffusion, enhanced activity and lower unit cost. Short
248
AMP analogs were devised based on the original sequence of myticusin-beta. Analogs were
249
manufactured through replacement of amino acids. Schiffer–Edmundson helical wheel 12
250
projections were performed using EMBOSS Pepwheel (European Bioinformatics Institute,
251
UK) to analyze the properties of analogs.
252
We substituted amino acids with arginine (Arg) and leucine (Leu) to increase the
253
antimicrobial activity and cationic property of the peptides. Information about net charge,
254
molecular weight, Boman index (potential protein interaction index), pI value, and
255
hydrophobicity were calculated using the Antimicrobial Peptide Database version 2.34
256
(APD2; http://aps.unmc.edu/AP/main.php) [29].
257
13
258
3. Results and discussion
259
3.1. Isolation of AMP from acidified crude extract of M. coruscus
260
Mantle tissue from M. coruscus was collected, homogenized, and acidified for purification.
261
Acidified mantle extracts were subjected to URDA and showed antibacterial activity against
262
gram-positive bacteria including B. cereus, B. subtilis, and Streptococcus mutans, as well as
263
gram-negative bacteria including E. coli and Pseudomonas aeruginosa (data not shown).
264
Based on the initial screening results, B. subtilis, which showed high susceptibility to the
265
extract, was selected as the reference strain for the antimicrobial assay.
266
Acidified mantle extract was subjected to RP-HPLC for isolation and purification. Several
267
peaks exhibited antimicrobial activity against B. subtilis. The most active fraction was eluted
268
at 30–32 min from the CapCell-Pak C18 RP column (Fig. 1A). This fraction was collected,
269
concentrated, and applied to the TSK-gel ODS-80TM C18 RP column for further purification.
270
Finally, the purified active fraction was eluted at 31–33 min and treated with trypsin to
271
confirm its proteinaceous nature. Antimicrobial activity against B. subtilis disappeared
272
completely after trypsin reaction (Fig. 1B). These results suggest that the purified peak
273
represented a proteinaceous component with antimicrobial activity.
274
Antimicrobial peptides found in Mytilus species have mainly been isolated from
275
hemocytes and hemolymph. Defensin from M. edulis and M. galloprovincialis, mytilin
276
isoforms A and B from M. edulis, mytilin isoforms C, D, and G1 from M. galloprovincialis,
277
myticins A, B and mytimycin from M. galloprovincialis, mytichitin-CBD from M. coruscus
278
and myticusin-1 from M. coruscus have been reported [19-23,30-32]. Uniquely, the AMP
279
found in this investigation was purified from the mantle of M. coruscus, and the eluted 14
280
fraction exhibited antibacterial activity against gram-positive bacteria, such as B. subtilis, in
281
contrast to myticusin-1 of M. coruscus [23].
282
283
3.2. Identification of the target peptide
284
The molecular weight and N-terminal amino acid sequence of the purified peptide were
285
determined to enable identification. The molecular mass of the purified peptide was 11,182
286
Da based on MALDI-TOF/MS analysis, and 23 amino acid residues of the purified peptide
287
were obtained through Edman degradation: S-D-H-Q-M-A-Q-S-A-C-M-G-L-A-Q-D-A-A-Y-
288
A-S-A-I (Fig. 1C).
289
The identified partial sequence of 23 N-terminal residues matched 91% with a hypothetical
290
protein partial (OPL33655) sequence from M. galloprovincialis and 82% with the myticusin
291
alpha precursor (AFJ04410) of M. coruscus [23,33]. For these reasons, we proposed the name
292
of myticusin-beta for the purified peptide.
293
Diverse AMPs of various of phyla contain amino-terminal copper and nickel (ATCUN)-
294
containing peptides (ATCUN-AMPs), which have a tripeptide with the consensus sequence
295
Xaa-Xaa-His (where Xaa is an amino acid), have been reported [34]. AMPs in mollusks that
296
contain the ATCUN motif are considered to show antimicrobial activity, and the identification
297
of threonine-aspartic acid-histidine (TDH), histidine-proline-histidine (HPH), and histidine-
298
serine-histidine (HSH) motifs in mollusks can be expected. For example, the ATCUN motif
299
region sequence of myticusin-1 from M. coruscus is Thr-Asp-His (TDH), that of myticin B
300
from M. galloprovincialis is His-Pro-His (HPH), and that of myticin A from M.
301
galloprovincialis is His-Ser-His (HSH). From the results of this study, myticusin-beta has 15
302
serine-aspartic acid-histidine (SDH) in the N-terminus of the peptide. As reported for
303
ATCUN-AMPs, this peptide has a conserved sequence of three amino acid residues including
304
histidine at the N-terminus, whereas the hypothetical partial (OPL33655) protein sequence
305
from M. galloprovincialis contains serine-aspartic acid-histidine (SDH) in its N-terminus.
306
The spectrum of antimicrobial activity may be dictated by the ATCUN motif, and further
307
research on the correlation between the sequence of this motif and peptide activity is required.
308
309
3.3. Cloning of cDNA encoding myticusin-beta
310
We screened the cDNA clones to determine the sequence of myticusin-beta. Specific
311
primers were designed to amplify the cDNA of myticusin-beta from M. coruscus and the full
312
cDNA sequence.
313
The complete sequence of myticusin-beta was 574 bp in length and contained a 387-bp
314
ORF sequence (Fig. 2). The purified peptide encoding 128 amino acids begins with 24 amino
315
acids of signal peptide, which was determined using the SIGNALP 4.0 online tool
316
(http://www.cbs.dtu.dk/services/SignalP). The mature peptide contains ten basic residues, 4
317
Lys, 4 Arg and 2 His, and its total hydrophobic ratio was 39%. The cleavage site for release
318
of the signal peptide is between glycine24 and serine25. Mature peptides of 104 amino acids
319
have 87% identity with myticusin-1 of M. coruscus and 88% identity with the hypothetical
320
protein of M. galloprovincialis.
321
Furthermore, we identified two other isoforms of myticusin-beta from the mantle of M.
322
coruscus and compared their amino acid sequences. We compared 128 amino acid sequences
323
of myticusin-beta and two isoforms, myticusin-beta 2 and myticusin-beta 3 were compared 16
324
with that of myticusin-1, revealing 74.2% amino acid identity (Fig. 3). Myticusin-beta had
325
very high amino acid sequence similarity with the two isoforms, showing 98.4% and 99.2%
326
identity with myticusin-beta 2 and myticusin-beta 3, respectively.
327
According to a comparison of 128 amino acid sequences of myticusin-1 with those of
328
myticusin-beta and its isoforms, threonine74 in myticusin-1 was substituted with alanine74 and
329
glycine74, whereas histidine118 in myticusin-1 was replaced with serine118 and asparagine118.
330
Consequently, two types of isoforms were identified for myticusin-beta. Differences in the
331
amino acid sequence can lead to diverse changes in protein functions; therefore, additional
332
analysis of the antimicrobial activity and structural properties of the synthetic peptide is
333
necessary.
334
A calculated molecular weight of 11,082 Da was obtained for the 104 amino acids of the
335
mature peptide, and the detected molecular weight was 11,182 Da based on mass
336
spectrometric analysis (Fig. 1C). The detected molecular weight was about 99 Da higher than
337
the calculated molecular weight and this phenomenon could be caused by various types of
338
post-translational modification, such as acetylation (shifted by 42 Da), Formylation (shifted
339
by 28 Da) allysine (loss of 1.03 Da), amidation (loss of 0.98 Da), 2,3-didehydroalanine (loss
340
of 18.02 Da), 2,3-didehydrobutyrine (loss of 18.02 Da), (Z)-2,3-didehydrotyrosine (loss of
341
2.02 Da), 3-oxoalanine cysteine (loss of 18.08 Da), 3-oxoalanine serine (loss of 2.02 Da), 2-
342
oxobutanoic acid (loss of 17.03 Da), pyrrolidone carboxylic acid (loss of 18.02 Da),
343
pyrrolidone carboxylic acid (loss of 17.03 Da), and pyruvic acid (loss of 33.10 Da) [35].
344
Therefore, modifications change the molecular weights and the difference between the
345
detected molecular weight and theoretical mass could be explained the characteristic of the
346
type of post-translational modification. 17
347
3.4. Expression and purification of the protein
348
Based on the cDNA sequence determined using the RACE method, the myticusin-beta
349
gene was amplified and cloned into the TrxA-fused pET-28a(+) vector [25]. The pET-28a(+)-
350
TrxA fusion vector comprising an N-terminal 6X His-tag fused with TrxA protein from E.
351
coli was used as the expression vector, because it is useful for high-level production of
352
soluble protein in the E. coli cytoplasm [25]. The constructed plasmid was transformed into E.
353
coli BL21 for expression.
354
Induced recombinant protein expression was analyzed using an EzWay-PAG gel and
355
protein expression was detected in the supernatant as well as in the pellet. The target protein
356
with 12 kDa of TrxA was purified, and the result was in agreement with the calculated
357
molecular weight of the target protein with TrxA (Fig. 4). Western blot analysis was
358
performed to confirm expression of the recombinant protein and a single clear band
359
corresponding to the molecular weight of the expected protein was observed. Finally, the
360
purified recombinant peptide was desalted and freeze-dried for evaluation of its antimicrobial
361
activity.
362
Expression systems using E. coli as the host pose several obstacles to the expression of
363
small cationic peptides. The target recombinant protein gene may be recognized as a harmful
364
or unnecessary protein introduced from the outside, and thus would be unproduced or
365
expressed as an insoluble aggregate. Insoluble aggregation leads to the need for refolding into
366
the correct form through a refolding process to obtain activity [36]. Various methods have
367
been investigated to overcome the shortcomings of the E. coli expression method, among
368
which fusion protein tactics have been reported as the most suitable for high-yield expression 18
369
of target proteins. Therefore, we ligated myticusin-beta into the pET-28a(+)-TrxA fusion
370
vector to make it suitable for cationic peptide expression [26,37].
371
Several fusion protein methods have been developed using glutathione S-transferase (GST),
372
N-utilization substance A (NusA), maltose-binding protein (MBP), and TrxA protein [38].
373
These fusion partners improved the production and solubility of target proteins. Among these
374
fusion partners, GST (20 kDa), NusA (55 kDa), and MBP (43 kDa) are large tags and their
375
co-expression may lead to erroneous assessment. However, TrxA protein is desirable due to
376
its small size of only 12 kDa and strong solubility-enhancing effects [38].
377
In this study, myticusin-beta was produced through induced expression, and the trxA fusion
378
expression system was used for expression of a soluble form of the AMP in the cytoplasm of
379
E. coli, which was suitable for subsequent purification steps.
380
381
3.5. Hemolytic activity
382
To determine the toxicity of the recombinant peptide, hemolytic activity was measured
383
against erythrocytes from olive flounder. Piscidin 1 and Triton X-100, used as positive
384
controls, showed strong hemolytic activity, but recombinant myticusin-beta peptide did not
385
show hemolytic activity (Fig. 5A). Furthermore, Piscidin 1 showed very high hemolytic
386
activity at a high concentration that decreased sharply at a low concentration, whereas
387
myticusin-beta peptide showed no dose-dependent hemolytic activity (Fig. 5B). These results
388
demonstrate that the recombinant peptide has no hemolytic activity.
389
Several AMPs have disadvantages, including hemolytic activity toward host cells. AMPs 19
390
bind indirectly to bacterial surfaces via electrostatic interactions or interact directly with host
391
cells, increasing the permeability of the cell membrane and causing membrane disruption
392
[39]. Therefore, the non-hemolytic property is necessary for application of AMPs as
393
alternative antibiotics. In this investigation, we showed that the recombinant protein
394
myticusin-beta showed low hemolytic activity, and thus could be applied as a substitute for
395
antibiotics.
396
397
3.6. Anti-scuticociliate activity
398
Scuticociliates are parasites regarded as the causative pathogen of the disease
399
scuticociliatosis in the marine aquaculture industry [40]. They cause mass mortality and
400
significant economic losses in aquaculture. Frequent outbreaks of scuticociliatosis in
401
aquaculture fish have been increasing worldwide, and development of effective anti-
402
scuticociliate technologies is required to solve this problem. Some marine AMPs show
403
activity against protozoa. For example, the antimicrobial cationic peptide Pc-Pis from
404
Psuedosciaena corcea is genetically related to the piscidin family and shows antimicrobial
405
activity against bacteria, fungi, and parasites [41].
406
We investigated the anti-scuticociliate activity of the recombinant protein against a
407
scuticociliate using the WST-1 solution assay [42]. The anti-scuticociliate activity of the
408
recombinant protein was evaluated based on the mortality, morphology, and number of living
409
parasites. The highest concentration of recombinant protein, 200 µg/mL, diminished parasite
410
numbers by approximately 50% after 24 h (Fig. 6). Damaged scuticociliates were observed
411
under a microscope, and the spindle shape of scuticociliate cells were swollen or burst (Fig. 20
412
6A). In addition, the fast-moving parasites slowed or stopped their movement. Scuticociliates
413
treated with recombinant protein had lower viability than untreated scuticociliates. In this
414
investigation, the viability of scuticociliates decreased with increasing concentration of the
415
recombinant protein through the WST-1 cell proliferation assay (Fig. 6B). These data indicate
416
that recombinant myticusin-beta has antiparasitic activity against scuticociliates.
417
418
3.7. Antimicrobial activities
419
In the present study, we verified the antibacterial activity of the expressed myticusin-beta
420
protein using the URDA method with various pathogenic reference strains (Table 1).
421
Recombinant myticusin-beta showed antibacterial activity against both gram-positive and
422
gram-negative bacteria (Fig. 7). Myticusin-beta displayed strong activity against gram-
423
positive strains, including B. subtilis, Clostridium perfringens, Staphylococcus aureus, and S.
424
mutans, as well as gram-negative strains including P. aeruginosa and Vibrio alginolyticus,
425
moderate activity against B. cereus and Klebsiella pneumoniae, and weak activity against
426
Streptococcus iniae and E. coli. Interestingly, gram-positive strains showed greater
427
susceptibility to myticusin-beta than gram-negative bacteria.
428
The antimicrobial spectrum of an AMP describes whether it has a wide range of activity or
429
narrow specificity to certain strains. Various AMPs such as defensins, mytilins, mytichitin-
430
CBD, myticusin-1, and myticins from Mytilus species have activity against bacteria and fungi,
431
but mytimycin has activity only against fungi [17-23,32]. Among reported AMPs, myticin,
432
mytichitin-CBD, and myticusin-1 are much less active against gram-negative bacteria and
433
fungi than other AMPs [17-23]. Myticusin-beta also showed antibacterial activity against 21
434
gram-positive and gram-negative bacteria, but no activity against fungi. Activity that was
435
stronger against gram-positive than gram-negative bacteria has been reported for most
436
mollusk AMPs.
437
The multiple modes of action of AMPs against gram-positive and gram-negative bacteria
438
and fungi have been described in recent years. Differences in membrane composition have
439
also been well investigated in gram-positive and gram-negative bacteria and fungi. Gram-
440
positive bacteria contain several layers of peptidoglycan in the cell wall, whereas the bacterial
441
membrane of gram-negative bacteria includes a single layer of peptidoglycan surrounded by
442
an outer membrane containing lipopolysaccharides, which protects bacteria as a permeability
443
barrier [13]. AMPs may interact with or pass through the cell envelope to reach their cellular
444
target. Fungal cell walls contain complex polysaccharides, such as chitin and glucan, that
445
inhibit passage through the cytoplasmic membrane. Therefore, a broad range of antimicrobial
446
activity of AMPs can be explained based on functional mechanisms and microbial cellular
447
structures.
448
As noted above, AMPs may have broad or specific antimicrobial activity spectra, and must
449
be carefully considered for use alone or in combination with other AMPs for their intended
450
purpose. Therefore, continuing research to identify novel AMPs is necessary for industrial
451
application of AMPs to replace antibiotics.
452
453
3.8. Quantitative analysis of myticusin-beta expression
454
As shown in Fig. 8, mRNA expression of myticusin-beta was measured via real-time
455
quantitative PCR as the transcriptional levels of myticusin-beta gene in various tissues, 22
456
including the adductor muscle, foot, gill, hemocytes, hepatopancreas, mantle, and excurrent
457
siphon. The mRNA levels were quantified after normalization to the internal reference gene
458
β-actin, and the amplification specificity for myticusin-beta and β-actin was determined and
459
analyzed from the melting curve. Gene expression of myticusin-beta was detected in all
460
tissues (Fig. 8). Myticusin-beta mRNA expression was highest in the mantle, followed by
461
hemocytes, moderate in the adductor muscle and gill, and low in the foot, hepatopancreas,
462
and excurrent siphon. We checked the control groups without injection and saline injected
463
samples. Control groups did not exhibit physical changes, and showed low gene expression
464
level compared to the infected group (Data not shown).
465
Mytilus species have an open circulatory system characteristic of mollusks, and AMPs are
466
produced and transported through the hemolymph to all tissues. Furthermore, abundant
467
myticusin-1 from M. coruscus was isolated from hemocytes [23]. However, the greatest
468
enhancement of myticusin-beta mRNA expression was detected in mantle tissue after
469
bacterial infection (Fig. 8). These results indicate that myticusin-beta is produced in a tissue-
470
specific manner and is related to the innate immune system of M. coruscus.
471
472
3.9. Antimicrobial activity of peptide analogs of myticusin-beta
473
In this study, we considered the length of the peptide, charge, hydrophobicity, Boman
474
index, and amino acid side chain in development of a short antibacterial peptide as a
475
substitute for antibiotics. We selected and synthesized several analog peptides, and selected
476
the peptide fragment VDAFHIYSRR in the mature peptide of myticusin-beta (Table 2).
477
Based on these results, amino acids in the selected region were replaced and rearranged to 23
478
increase antimicrobial activity. The net charge, molecular weight, Boman Index, and pI were
479
predicted using APD2 and the ExPASy online tool (Table 2). Schiffer–Edmundson helical
480
wheel projections were performed to predict hydrophobic and hydrophilic regions in the
481
secondary structures of synthetic peptides (Fig. 9).
482
The EMBOSS Pepwheel program was used to identify hydrophobic and hydrophilic
483
regions in the secondary structure of the native and analog peptides. With this program, we
484
could predict interactions and effects between adjacent amino acids and side chains. We
485
considered amino acids not only at the front and back, but also at the top and bottom of the
486
helical structure, and designed cationic AMPs to increase antibacterial activity. Arginine
487
(Arg), tyrosine (Tyr), aspartic acid (Asp), and serine (Ser) residues in the native form of
488
myticusin-beta were modified with Arg or Leu in the analog peptide (Fig. 9). Re-modeling of
489
the analog peptide showed opposite positions of hydrophobic and hydrophilic regions,
490
contributing to the antimicrobial activity.
491
Cationic AMPs are amphipathic peptides with an overall positive charge that interact with
492
negatively charged bacterial membranes and form transmembrane pores [43-47]. Given these
493
characteristics, we attempted to improve the related values of various factors. The
494
antimicrobial activities of the native and analog peptides are shown in Table 3. Interestingly,
495
increased net charge (+1 to +4), basic pI value (> 10), reduced Boman index value (≤ 1), and
496
converted structure increased the spectrum of antimicrobial activity (Table 3). The analog
497
showed increased antimicrobial activity against all strains tested (nine gram-positive bacteria,
498
nine gram-negative bacteria, and one fungus, Candida albicans).
499
The development of AMPs with increased activity in this manner was previously reported 24
500
as a valid method, and the synthesized analog peptide showed increased antibacterial activity
501
against gram-positive and gram-negative bacteria and fungi due to its low Boman index,
502
increased net charge, and total hydrophobic ratio. This study of synthetic analog peptides
503
shows that AMPs can be activated and can contribute greatly to research into new antibiotic
504
substitutes.
505
25
506
4. Conclusion
507
We isolated and purified 11,182 Da of a novel AMP from acidified mantle tissue extract of
508
M. coruscus. The purified AMP was composed of 24 amino acids of signal peptide and 104
509
amino acids of mature peptide based on the complete sequence of the target protein. The
510
sequence identity was similar to the reported myticusin-1 of M. coruscus. Hence, we
511
proposed naming the purified peptide myticusin-beta and identified two other isoforms based
512
on the sequence.
513
Constructed TrxA-fused recombinant myticusin-beta was expressed in a soluble form, and
514
the purified single peptide exhibited a broad spectrum of antibacterial activity against gram-
515
positive and gram-negative strains. Furthermore, recombinant myticusin-beta revealed anti-
516
scuticociliate activity in a dose-dependent manner without causing hemolysis. We designed a
517
short AMP analog derived from myticusin-beta based on its amino acid sequence, secondary
518
structure, charge, hydrophobicity, and correlation of the amino acid side chain. The analog
519
was rearranged with substituted amino acids and displayed strongly increased activity on the
520
URDA plate.
521
The highest transcriptional level of the myticusin-beta gene was detected in mantle tissue
522
after infection. These results suggest that myticusin-beta is an immune-related AMP of M.
523
coruscus and a promising template for the development of novel AMPs as a substitute for
524
antibiotics. This report contributes to elucidating AMPs and the immune system of mollusks,
525
although more studies are needed on the structural features and functional mechanisms of
526
AMPs.
527 26
528
Acknowledgments
529
This research was supported by a grant from the National Institute of Fisheries Science
530
(R2019016), Korea. This research was also supported by the Collaborative Genome
531
Program of the Korea Institute of Marine Science and Technology Promotion (KIMST)
532
funded by the Ministry of Oceans and Fisheries (MOF) (No. 20180430).
533
27
534
Reference
535 536
[1] J.A. Tincu, S.W. Taylor. Antimicrobial peptides from marine invertebrates, Antimicrob.
537
Agents Chemother. 48 (2004) 3645-3654.
538 539
[2] L. Wang, L. Qiu, Z. Zhou, L. Song. Research progress on the mollusc immunity in China.
540
Dev. Comp. Immunol. 39 (2013) 2-10.
541 542
[3] C. Zannella, F. Mosca, F. Mariani, G. Franci, V. Folliero, M. Galdiero, P.G. Tiscar, M.
543
Galdiero, Microbial diseases of bivalve mollusks: Infections, immunology and antimicrobial
544
defense. Mar. Drugs 15 (2017) 182.
545 546
[4] A. Charles, Jr. Janeway, P. Travers, M. Walport, M. J. Shlomchik. Immunobiology: The
547
Immune System in Health and Disease. fifth ed., Garland publishing, New York, 2001.
548 549
[5] D. Destoumieux, P. Bulet, D. Loew, A. Van Dorsselaer, J. Rodriguez, E. Bachère.
550
Penaeidins, a new family of antimicrobial peptides isolated from the shrimp Penaeus
551
vannamei (Decapoda), J. Biol. Chem. 272 (1997) 28398–28406.
552 553
[6] L. Mercado, P. Schmitt, S. Marshall, G. Arenas. Gill tissues of the mussel Mytilus edulis
554
chilensis: a new source for antimicrobial peptides. Electron. J. Biotechnol. 8 (2005) 284-290.
555 556
[7] G. Arenas, F. Guzmán, C. Cárdenas, L. Mercado, S.H. Marshall. A novel antifungal
557
peptide designed from the primary structure of a natural antimicrobial peptide purified from
558
Argopepcten purpuratus. Peptides 30 (2009) 1405-1411.
559 560
[8] M. De Zoysa, I. Whang, L. Youngdeuk, L. Sukkyoung, J.S. Lee, L. Lee. Defensin from
561
disk abalone Haliotis discus discus: molecular cloning, sequence characterization and
562
immune response against bacterial infection. Fish Shellfish Immunol. 28 (2010) 2261-2266. 28
563 564
[9] M. Zasloff. Antimicrobial peptides of multicellular organisms. Nature 415 (2002) 389-
565
395.
566 567
[10] J.J, Oppenheim, A. Biragyn, L.W. Kwak, D. Yang. Roles of antimicrobial peptides such
568
as defensins in innate and adaptive immunity. Ann. Rheum. Dis. 62 (suppl 2) (2003) ii17-ii21.
569 570
[11] T.J. Chia, Y.C. Wu, J.Y. Chen, S.C. Chi. Antimicrobial peptide (AMP) with antiviral
571
activity against fish nodavirus. Fish Shellfish Immunol. 28(3) (2010) 434-439.
572 573
[12] K.R. Reddy, R.D. Yedery, C. Aranga. Antimicrobial peptides: premises and promises.
574
Int. J. Antimicrob. Agents 24 (2004) 536-547.
575 576
[13] V. Teixeira, M.J. Feio, M. Bastos. Role of lipids in the interaction of antimicrobial
577
peptides with membranes. Prog. Lipid. Res. 51(2) (2012) 149-177.
578 579
[14] C.B. Park, H.S. Kim, S.C. Kim. Mechanism of action of the antimicrobial peptide
580
buforin II: buforin II kills microorganisms by penetrating the cell membrane and inhibiting
581
cellular functions. Biochem. Biophys. Res. Commun. 6;244(1) (1998) 253-257.
582 583
[15] F. Hubert, T. Noёl, P. Roch. A member of the athropod defensin family from edible
584
mediterranean mussels (Mytilus galloprovincialis). Eur. J. Biochem. 240 (1996) 302-206.
585 586
[16] G. Mitta, F. Vandenbulcke, F. Hubert, M. Salzet, P. Roch. Involvement of mytilins in
587
mussel antimicrobial defense. J. Biol. Chem. 275 (2000) 12954-12962.
588 589
[17] G. Mitta, F. Hubert, T. Noël. Myticin, a novel cysteine-rich antimicrobial peptide
590
isolated from hemocytes and plasma of the mussel Mytilus galloprovinvialis. Eur. J. Biochem.
591
265 (1999) 71-78. 29
592 593
[18] F. Cantet, M. Toubiana, M.G. Parisi, M. Sonthi, M. Cammarata, P. Roch. Individual
594
variability of mytimycin gene expression in mussel. Fish Shellfish Immunol. 2012 (33) 641-
595
644.
596 597
[19] M. Gerdol, G. De Moro, C. Manfrin, P. Venier, A. Pallavinini. Big defensins and
598
mytimacins, new AMP families of the Mediterranean mussel Mytilus galloprovincialis. Dev.
599
Comp. Immunol. 36 (2012) 390-399.
600 601
[20] C.L. Qin, W. Huang, S.Q. Zhou, X.C. Wang, H.H. Fan, R.X. Wang, P. Gao, Z. Liao,
602
Characterization of a novel antimicrobial peptide with chitin-biding domain from Mytilus
603
coruscus, Fish shellfish Immunol. 41 (2014) 362-370.
604 605
[21] H.H. Liu, M.H. Fan, H.H Liu, P.Z. Qi, L. Zhi. Production and function of different
606
regions from mytichitin-1 of Mytilus coruscus. Fish Shellfish Immunol. 84 (2019) 1018-1029.
607 608
[22] R. Oh, M.J. Lee, Y.O. Kim, B.H. Nam, H.J. Kong, J.W. Kim, J.Y. Park, J.K. Seo, D.G.
609
Kim. Purification and characterization of an antimicrobial peptide myitichitin-chitin binding
610
domain from the hard-shelled mussel, Mytilus coruscus. Fish Shellfish Immunol. 83. (2018)
611
425-435.
612 613
[23] Z. Liao, XC Wang, H.H. Liu, M.H. Fan, J.J. Sun, W. Shen. Molecular characterization
614
of a novel antimicrobial peptide from Mytilus coruscus. Fish shellfish Immunol. 34 (2013)
615
610-616.
616 617
[24] R. Oh, M. J. Lee, N.S. Lee, Y.O. Kim, H.J. Kong, J.W. Kim, J.Y. Park, B.H. Nam, D. G.
618
Kim. Characterization and species-specific detection of Vibrio parahemolyticus-related
619
species associated with mass mortality of ark shell (Scapharca broughtonii). Korean J.
620
Malacol. 35(3) 275-289. 30
621 622
[25] R.I. Lehrer, M. Rosenman, S.S.L. Harwig, R. Jackson, P. Eisenhaur, Ultrasensitive assay
623
for endogeneous antimicrobial peptides. J. Immunol. Meth. 137 (1991) 167-173.
624 625
[26] C.H Kim, Y.J. Lee, H.J. Go, H.Y. Oh, T.K. Lee, J.B. Park, N.G. Park. Defensin-
626
neurotoxin dyad in a basally branching metazoan sea anemone. FEBS (2017) 3332-3338.
627 628
[27] N.G Park, U. Silphaduang, H.S. Moon, J.K. Seo, J. Corrales, E.J. Noga, Structure-
629
activity relationships of piscidin 4, a piscine antimicrobial peptide, Biochemistry 50 (2011)
630
3288-3299.
631 632
[28] K.K. Livak, T.D. Schmittgen. Analysis of relative gene expression data using real-time
633
quantitative PCR and the 2-∆∆Ct method. Methods 25 (2001) 402-408.
634 635
[29] G, Wang, X. L.i, Z. Wang. APD2: the updated antimicrobial peptide database and its
636
application in peptide design. Nucleic Acids Res. 37 (2009) D933-D937.
637 638
[30] M. Charlet, S. Chernysh, H. Philippe, C. Hetru, JA. Hoffmann, P. Bulet. Innate
639
immunity. Isolation of several cysteine-rich antimicrobial peptides from the blood of a
640
mollusc, Mytilus edulis. J. Biol. Chem. 271 (1996) 21808-21813.
641 642
[31] G. Mitta, F. Vandenbulcke, P. Roch. Original involvement of antimicrobial peptides in
643
mussel innate immunity. FEBS Lett, 486(3) (2000) 185-190.
644 645
[32] G. Mitta, F. Huber, E.A. Dyrynda, P. Boudry, P. Roch. Mytilin B and MGD2, two
646
antimicrobial peptides of marine mussels: gene structure and expression analysis. Dev. Comp.
647
Immunol. 24 (2000) 381-393.
648
31
649
[33] M. Murgarella, D. Puiu, B. Novoa, A. Figueras, D. Posada, C. Canchaya. A first insight
650
into the genome of the filter-feeder mussel Mytilus galloprovincialis. PLoS One 11(3) (2016)
651
e0151561.
652 653
[34] M. D. J. Libardo, T. J. Paul, R. Orabhakar, A. M. Angeles-Boza. Hybrid peptide
654
ATCUN-sh-Buforin: Influence of the ATCUN charge and stereochemistry on antimicrobial
655
activity. Biochimie. 113 (2015) 143-155.
656 657
[35] C. E. Parker, C. Mocanu, M. Mocanu, N. Dicheva, M. R. Warren. Mass Spectromerty
658
for post-translational modification. Neuroproteomics, Taylor & Francis, UK, 2010, Chapter 6.
659 660
[36] Y Shan, Y Dong, D Jiang. Recombinant expression of a novel antimicrobial peptide
661
consisting of human defensin 5 and Mytilus coruscus mytilin-1 Eschrichia coli. J. Korean
662
Soc. Appl. Biol. Chem. 58(6) (2015) 807-812.
663 664
[37] K.L. Piers, M.H. Brown, R.E. Hancock. Recombinant DNA procedures for producing
665
small antimicrobial cationic peptides in bacteria. Gene 134(1) (1993) 7-13.
666 667
[38] S. Costa, A. Almeida, A. Castro, L. Domingues. Fusion tags for protein solubility,
668
purification, and immunogenicity in Escherichia coli: the novel Fh8 system. 5(63) (2014) 1-
669
20.
670 671
[39] G. Diamond, G. Beckloff, A. Weinberg, K.O. Kisich. The roles of antimicrobial peptides
672
in innate host defense. Curr. Pharm. Des. 15 (2009) 2377-2392.
673 674
[40] M.C. Piazzon, J. Leiro, J. Lamas. Fish immunity to scuticociliate parasites. Dev. Comp.
675
immunol. 41 (2013) 248-256.
676
32
677
[41] S.F. Niu, Y. Jin, X. Xu, Y. Qiao, Y. Wu, Y. Mao, Y.Q. Su, J. Wang. Characterization of
678
a novel piscidin-like antimicrobial peptide from pseudosciaena crocea and its immune
679
response to Cryptocaryon irritans. Fish Shellfish Immunol. 35 (2) 513-524.
680 681
[42] M. Ginouves, B. Carme, B. Carme, P. Couppie, G. Prevot. Comparison of tetrazolium
682
salt assay for evaluation of drug activity against Leishmania spp. J. Clin. Microbiol. 52
683
(2014) 2131-2138.
684 685
[43] B.H. Nam, J.Y. Moon, E.H. Park, Y.O. Kimm, D.G. Kim, H.J. Kong, W.J. Kim, Y.J. Jee,
686
J.M. An, N.G. Park, J.K. Seo. Antimicrobial activity of peptides derived from Olive flounder
687
lipopolysaccharide binding protein bactericidal permeability-increasing protein (LBP/BPI)
688
Mar. Drugs 12 (2014) 5240-5257.
689 690
[44] W. Aoki, M. Ueda. Characterization of Antimicrobial peptides toward the development
691
of novel antibiotics. pharmaceuticals 6 (2013) 1055-1081.
692 693
[45] K. Matsuzaki, K. Sugishita, N. Fujii, K. Miyajima. Molecular basis for membrane
694
selectivity of an antimicrobial peptide, megainin 2. Biochemistry 286 (1995) 420-421.
695 696
[46] J.K. Seo, D.G. Kim, R. Oh, K.S. Park, I.A. Lee, S.M. Cho, K.Y. Lee, B.H. Nam.
697
Antimicrobial effect of the 60S ribosomal protein L29 (cgRPL29), purified from the gill of
698
pacific oyster, Crassostrea gigas, Fish Shellfish Immunol. 67 (2017) 675-683.
699 700
[47] B.H. Nam, J.Y. Moon, E.H. Park, H.J. Kong, Y.O. Kim, D.G. Kim, W.J. Kim, C.M. An,
701
J.K. Seo, Antimicrobial and antitumor activities of novel peptides derived from the
702
lipopolysaccharide- and ß-1,3-glucan binding protein of the Pacific abalone Haliotis discus
703
hannai, Mar. drugs 14 (2016) 227.
704 705 33
706
Table 1. Pathogenic strains used in this study.
Strain
Reference
Medium
Temperature (°C)
Bacillus cereus
KCTC 1012
NB
30
Bacillus subtilis
KCTC 1021
TSB
37
ECa
TSB
37
Enterococcus faecalis
KCTC 3206
BHI
37
Staphylococcus aureus
KCCM 11335
TSB
37
Streptococcus iniae
KCTC 3657
BHI+1% NaCl
37
Streptococcus mutans
KCTC 3065
BHI
37
Streptococcus vestibularis
KCTC 3650
TSB+0.3%YE
37
Streptococcus parauberis
KCTC 3651
TSB+0.3%YE
37
Lactococcus garvieae
KCTC 3772
MRS
30
KCCM 40271
NB
37
Enterobacter cloacae
KCTC 2361
NB
37
Klebsiella pneumoniae
KCTC 12385
NB
37
Proteus mirabilis
KCTC 2510
NB
37
Providencia stuartii
KCTC 2569
NB
37
Pseudomonas aeruginosa
KCTC 1636
NB
37
Vibrio alginolyticus
KCTC 2472
BHI
37
Vibrio harveyi
KCCM 40866
BHI+1% NaCl
25
Vibrio parahaemolyticus
KCCM 41664
BHI+1% NaCl
37
KCCM 11282
YM
25
Gram positive
Clostridium perfringens
Gram negative Escherichia coli
Fungus Candida albicans 707
a
EC; Environmental collection
34
708
Table 2. Sequences and physicochemical properties of the peptide variants used in this study.
MW Sequence
Native
VDAFHIYSRR
Length
10
Boman index
Charge
+1
Hydrophobic
Hydrophobicity
pI (Da)
(kcal/mol)
1,263.42
3.3
8.72
Region Modifications ratio (%)
(kcal/mol)
40
1.01
84–93 D→R, Y→L
Analog
VRAFHILLRL
10
+2
1,237.56
0.59
11.8
70
−1.09 S→L, R→L
35
709
Table 3. Antimicrobial activities of peptides against pathogenic bacteria based on the URDA
710
method. Native
Analog
Diameter of zone of inhibition (mm) Gram positive Bacillus cereus
-
4.9
Bacillus subtilis
4.5
7.9
Enterococcus faecalis
-
5.1
Streptococcus mutans
-
8.0
Streptococcus iniae
-
5.1
2.5
7.2
Streptococcus vestibularis
-
2.5
Streptococcus parauberis
-
13.1
Lactococcus garvieae
-
7.9
Vibrio alginolyticus
-
6.6
Vibrio parahaemolyticus
-
7.6
Escherichia coli
-
11.7
Enterobacter cloacae
-
8.6
Klebsiella pneumoniae
-
9.9
Edwardsiella tarda
-
4.3
Proteus mirabilis
-
6.6
Providencia stuartii
-
9.1
Pseudomonas aeruginosa
-
9.2
2.5
9.3
Staphylococcus aureus
Gram negative
Fungus Candida albicans 711
Well diameter: 2.2 mm 36
712
Figure legends
713
Fig. 1. Purification and antimicrobial activity of purified peptide from mantle extract of
714
Mytilus coruscus.
715
(A) Antimicrobial activity of the purified peak (30–32 min) against Bacillus subtilis.
716
Acidified extract was injected into a CapCell-Pak C18 RP column with a gradient of 5–65%
717
ACN in 0.1% TFA over 60 min at a flow rate of 1.0 mL/min. (B) Antimicrobial activity of the
718
purified peak (31–33 min) and trypsin-treated purified peak against B. subtilis. The active
719
fraction was applied to a TSK-gel ODS-80TM C18 RP column. Elution was performed with a
720
linear gradient of 5–65% ACN (pH 2.2) in 0.1% TFA for 60 min at a flow rate of 1.0 mL/min.
721
The eluate was monitored at 220 nm. The fraction with the absorbance peak (indicated by an
722
arrow) showed antimicrobial activity before and after trypsin treatment against B. subtilis.
723
Scale represents 5 mm. (C) Mass spectrometric analysis showing a mass of 11,182.003 Da
724
and the N-terminal sequence (23 amino acids) determined through Edman degradation.
725 726
Fig. 2. cDNA sequence and derived amino acid sequence of myticusin-beta.
727
Deduced amino acid sequence of the ORF is shown below the nucleotide sequence. Asterisk
728
indicates the stop codon and outline indicates the signal peptide of myticusin-beta.
729 730
Fig. 3. Multiple sequence alignment of myticusin-1 with myticusin-beta and its isoforms.
731
Myticusin-beta is indicated by MC1 and its two isoforms by MC2 and MC3. Myticusin-beta
732
and two of its isoforms were identified and compared to myticusin-1. Residues are shaded
733
based on their degree of conservation.
734
Fig. 4. Overexpression and purification of recombinant myticusin-beta. 37
735
TrxA-fused recombinant protein was purified using Ni-NTA affinity chromatography. Lane
736
M, molecular mass marker; lane 1, non-induced protein; lane 2, induced protein; lane 3,
737
soluble protein; lane 4, inclusion body; lane 5, purified myticusin-beta protein (denoted by
738
red arrow); lane 6, product of western blot with purified myticusin-beta protein.
739
Fig. 5. Hemolytic activity of myticusin-beta and piscidin 1 against erythrocytes of flounder
740
(Paralychthys olivaceus).
741
(A) The concentration of each sample was 100 µg/mL. (B) The effect of hemolysis depending
742
on concentration (100, 50, 25, 12.5, and 6.25 µg/mL).
743
744
Fig. 6. Anti-scuticociliate activity of recombinant myticusin-beta based on WST-1 reagent.
745
(A) Agglutination of parasites treated with various concentrations of recombinant myticusin-
746
beta (0–200 µg/mL). (B) Percent viability of parasites (scuticociliates) by concentration of
747
recombinant myticusin-beta (0–200 µg/mL). Error bars represent the mean ± standard
748
deviation of three technical replicates.
749
Fig. 7. Antimicrobial activity and spectrum of purified recombinant myticusin-beta.
750
Antimicrobial activity of recombinant myticusin-beta against various strains. The
751
antimicrobial activity value represents the diameter of the clearing zone. Well diameter: 2.2
752
mm.
753
Fig. 8. Quantitative analysis of myticusin-beta expression in various tissues.
754
Tissue-specific expression of myticusin-beta. Error bars represent the mean ± standard
755
deviation of three technical replicates. ADD, adductor muscle; FOO, foot; GIL, gill; HEM,
756
hemocytes; HEP, hepatopancreas; MAN, mantle; SIO, excurrent siphon. 38
757 758
Fig. 9. Helical wheel depiction of myticusin-beta synthetic peptide.
759
Arrows indicate the amino acid residues substituted in the peptide. Amino acid residues were
760
substituted to increase net charge and hydrophobic ratio. Blue, hydrophobic residues; red,
761
acidic residues; orange, basic residues; purple, uncharged residues.
762 763
39
764
Fig. 1.
765 766
(A)
767 768
(B)
769
40
770
(C)
771 772
773
41
774 775
Fig. 2.
776
777
42
778 779
Fig. 3.
780
43
781 782
Fig. 4.
783
784 785
44
786 787
Fig. 5.
788
(A)
789 790
791
(B)
792 793
45
794
Fig. 6.
795
(A)
796 797
(B)
798 46
799
Fig. 7.
800 801
47
802
Fig. 8.
803 804
48
805
Fig. 9.
806
807 808 809 810 811 812 813 814 815 816
49
- We isolated and purified 11,182 Da of a novel antimicrobial peptide from acidified mantle tissue extract of Mytilus coruscus. - Constructed TrxA-fused recombinant myticusin-beta exhibited spectrum of antibacterial activity and anti-scuticociliate activity without causing hemolysis. - Designed and synthesized myticusin-beta analog revealed markedly improved antimicrobial activity. - Myticusin-beta is an immune-related antimicrobial peptide of Mytilus coruscus and an effective alternative to antibiotics.