Nomenclature for factors of the HLA system, update December 2010

Human Immunology 72 (2011) 376 –377

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Nomenclature for factors of the HLA system, update December 2010 Compiled by Steven G. E. Marsh for the WHO Nomenclature Committee for Factors of the HLA System The following sequences have been submitted to the Nomenclature Committee since the November 2010 nomenclature update and, following agreed policy, have been assigned official allele designations [1]. Full details of all sequences will be published in a forthcoming report. Below are listed the newly assigned sequences (Table 1) and confirmations of previously reported sequences (Table 2). The accession number of each sequence is given and these can be used to retrieve the sequence files from the EMBL, GenBank or DDBJ data libraries. Although accession numbers have been assigned by the data-libraries and most sequences are already available, there is still the possibility that an author may not yet have allowed the sequence to be released; in such a case you will have to contact the submitting author directly. Additional information pertaining to new sequences is often included in the publications describing these alleles; a listing of recent publications that describe new HLA sequences is given in Table 3. All new and confirmatory sequences should now be submitted directly to the WHO Nomenclature Committee for Factors of the HLA System via the IMGT/HLA Database using the sequence submission tool provided [2]. The IMGT/HLA Database may be accessed via the World Wide Web at: www.ebi.ac.uk/imgt/hla. Address for correspondence: Professor Steven GE Marsh, Anthony Nolan Research Institute, Royal Free Hospital, Pond Street, London NW3 2QG, United Kingdom. Tel. ⫹44 20 7284-8321; Fax ⫹44 20 7284-8331. www.hla.alleles.org; www. anthonynolan.org/hig; www.ebi.ac.uk/imgt/hla. E-mail address: [email protected].

References [1] Marsh SGE, Albert ED, Bodmer WF, Bontrop RE, Dupont B, Erlich HA, FernÂndezViÒa M, Geraghty DE, Holdsworth R, Hurley CK, Lau M, Lee KW, Mach B, Maiers M, Mayr WR, Mu¨ller CR, Parham P, Petersdorf EW, Sasazuki T, Strominger JL, Svejgaard A, Terasaki PI, Tiercy JM, Trowsdale J: Nomenclature for Factors of the HLA system, 2010. Tissue Antigens 2010;75(4):291– 455. [2] Robinson J, Malik A, Parham P, Bodmer JG, Marsh SGE: IMGT/HLA database–a sequence database for the human major histocompatibility complex. Tissue Antigens 2000;55(3):280 –7. [3] Wurm M, Tischer S, Immenschuh S, Bade-Doeding C, Blasczyk R, Eiz-Vesper B: The amino acid variation of HLA-A*02:182 in a highly conserved region is predicted to be functionally similar to HLA-A*02:01:01:01 allele. Tissue Antigens 2011;77(2):149 –50. [4] Zhu FM, He YM, Lv HJ, Yan LX: Identification of a new HLA-A*02 allele, HLA-A*02:230, using polymerase chain reaction sequence-based typing in a Chinese individual. Tissue Antigens 2011;77(2):150 –1. [5] Cervelli C, Canossi A, Azzarone R, Scimitarra M, Papola F: Sequence-based typing identification of the novel HLA-A*24:135 variant in a Maldivian family with a bone marrow patient. Tissue Antigens 2011;77(2):152–3. [6] Ko SY, Oh HB, Heo YS, Jun JH, Kwon OJ: B*39:60, a novel HLA-B*39 allele identified by sequence-based typing. Tissue Antigens 2011;77(2):155– 6. [7] Miao F, Sun H, Pan N, Shen Y, Xie W, Zhang J: Two novel HLA class I alleles, HLA-B*40:122 and HLA-B*40:127. Tissue Antigens 2011;77(2):156 –7. [8] Liu B, Xiong Y, Tian C, Zhong Y, Liu SM: The complete genomic sequence of HLA-DRB1*10:01:01 was identified by sequencing in a Han Chinese individual. Tissue Antigens 2011;77(2):159 – 60. [9] Sohn YH, Oh HB, Heo YS, Park N, Kwon OJ: Identification of a novel HLA-DRB1 allele, DRB1*11:95. Tissue Antigens 2011;77(2):160 –1. [10] Jakubauskas A, Griskevicius L: Sequence-based typing showed a novel HLA-DQB1*05 allele, DQB1*05:01:03. Tissue Antigens 2011;77(2):157– 8. [11] Cervera I, Herraiz MA, Penaloza J, Barbolla ML, Jurado ML, Macedo J, Vidart JA, Martinez-Laso J: Human leukocyte antigen-G allele polymorphisms have evolved following three different evolutionary lineages based on intron sequences. Hum Immunol 2010;71(11):1109 –15.

0198-8859/11/$32.00 - see front matter 䉷 2011 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved. doi:10.1016/j.humimm.2011.01.013

S.G.E. Marsh / Human Immunology 72 (2011) 376 –377

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Table 1 New Sequences HLA allele

Cell identification

Accession number

Submitting author

A*24:171 B*27:79 B*40:162 B*44:02:17 B*44:27:02 B*44:127 B*51:01:25 C*01:51 C*03:108 C*07:171 C*16:01:06 DRB1*03:60 DRB1*04:95 DRB1*07:20 DRB1*07:21 DRB1*08:04:06 DRB1*08:42 DRB1*09:11 DRB1*11:102 DRB1*14:106 DRB1*14:107 DRB1*14:108 DRB1*14:109 DRB1*15:52 DRB1*16:18 DQB1*05:11

81106411 CS0915385 5351000186 SRANN 96059046 5321000627 96058186 BY00755 BY00783 BY00754 BY00758 BY00772 BY00770 BY00773 BY00766 BY00782 BY00769 XIAN47785 BY00779 BY00765 BY00763 BY00752 BY00786 81104378 BY00771 10011772

HQ680840 FR734083 HQ699675 HQ693697 HQ662947 HQ699674 HQ662948 HQ700664 HQ717417 HQ700665 HQ700661 HQ717408 HQ700650 HQ700647 HQ700653 HQ717418 HQ700651 HQ677626 HQ717421 HQ700654 HQ700656 HQ717409 HQ717414 HQ696865 HQ700649 HQ662946

Daniel Fuerst, Ulm, Germany Yubin Xie, Changsha, China Zhi-Hui Feng, Qingdao, China Youri Serov, Indianapolis, USA Daniel Fuerst, Ulm, Germany Zhi-Hui Feng, Qingdao, China Daniel Fuerst, Ulm, Germany Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Mengli Liu, Xi’an, China Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Daniel Fuerst, Ulm, Germany Carolyn K Hurley, Washington DC, USA Daniel Fuerst, Ulm, Germany

Table 2 Confirmatory Sequences HLA allele

Cell identification

Accession number

Submitting author

B*15:31 B*15:34 C*03:69 C*04:77 C*05:27 C*15:36 C*16:22 C*16:26 DRB1*04:42 DRB1*11:84 DRB1*12:20 DRB1*13:48 DRB1*14:52 DRB1*14:103 DRB1*16:14

CS00060 CS00061 BY00790 BY00756 BY00760 BY00759 BY00757, BY00784 BY00787 BY00776 BY00775 BY00764 BY00774 BY00777 JMDP36K086 BY00768

HQ693236 HQ696952 HQ717410 HQ700663 HQ700659 HQ700660 HQ700662 HQ717413 HQ717424 HQ717425 HQ700655 HQ700648 HQ717423 AB602446 HQ700652

Kai Cao, Los Angeles, USA Kai Cao, Los Angeles, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Carolyn K Hurley, Washington DC, USA Kenji Tadokoro, Tokyo, Japan Carolyn K Hurley, Washington DC, USA

Table 3 Recently Published Sequences HLA allele

References

A*02:182 A*02:230 A*24:135 B*39:60 B*40:122 B*40:127 DRB1*10:01:01 DRB1*11:95 DQB1*05:01:03 G*01:01:01:01 G*01:01:01:02 G*01:01:01:05 G*01:01:02:01 G*01:01:05 G*01:01:08 G*01:03 G*01:04:01 G*01:04:03 G*01:04:04 G*01:06 G*01:08

[3] [4] [5] [6] [7] [7] [8] [9] [10] [11] [11] [11] [11] [11] [11] [11] [11] [11] [11] [11] [11]