- Email: [email protected]
Volume, Contents, Author and Keyword Index
Seminars in
Cell & Developmental Biology Volume Contents and Index to Volume 16, 2005
doi:10.1016/S1084-9521(05)00109-6
seminars in CELL & DEVELOPMENTAL BIOLOGY Editor-in-Chief John Davey Department of Biological Sciences University of Warwick Coventry CV4 7AL, UK
Editorial Advisory Board David R Garrod University of Manchester UK
William J Lennarz State University of New York at Stony Brook USA
Robert A. Schulz The University of Texas M.D. Anderson Cancer Center USA
David R. Garrod University of Manchester UK
Bernard Maro CNRS, Université Paris, France
Fiona Watt Keratinocyte Laboratory London Research Institute UK
William Jeffery Bodega Marine Laboratory University of Maryland USA
Ben Scheres Utrecht University The Netherlands
Editorial correspondence should be addressed to: Seminars in Cell & Developmental Biology, Editorial Office, 525 B Street, Suite 1900, San Diego, CA 92101-4495, USA. Please note that this journal is a commissioned review journal and does not accept unsolicited articles. If you are interested in acting as a guest editor, please contact the Editorial Office: [email protected] If you have been invited to write a review, please refer to the online guide for authors, which is available via the Author Gateway, http://authors.elsevier.com USA mailing notice: Seminars in Cell & Developmental Biology (ISSN 1084-9521) is published bimonthly in February, April, June, August, October and December, by Elsevier Ltd. (P.O. Box 211, 1000 AE Amsterdam, The Netherlands). Annual subscription price including postages €594. Periodical postage rate paid at Jamaica, NY 11431. USA POSTMASTER: Send address changes to Seminars in Cell & Developmental Biology, Elsevier, 6277 Sea Harbour Drive, Orlando, FL 32887-4900. AIRFREIGHT AND MAILING in the USA by Publications Expediting Inc., 200 Meacham Avenue, Elmont, NY 11003. For enquiries relating to the submission of articles (including electronic submission where available) please visit Elsevier’s Author Gateway at http://authors.elsevier.com. The Author Gateway also provides the facility to track accepted articles and set up e-mail alerts to inform you of when an article’s status has changed, as well as detailed artwork guidelines, copyright information, frequently asked questions and more. Contact details for questions arising after acceptance of an article, especially those relating to proofs, are provided after registration of an article for publication. Journal is indexed and included in Index Medicus, MEDLINE on the MEDLARS system. The home page for Seminars in Cell & Developmental Biology can be found at http://www.elsevier.com/locate/semcdb The Guide for Authors can be found at: http://www.elsevier.com/locate/semcdb
seminars in CELL & DEVELOPMENTAL BIOLOGY Volume 16 Number 1
February 2005 Table of Contents Protein Synthesis in Health and Disease Guest Editor: Chris G. Proud
Editorial
C.G. Proud
1
eIF2 and the control of cell physiology
C.G. Proud
3
Translational control in virus-infected cells: models for cellular stress responses
M.J. Clemens
13
Role of amino acids in the translational control of protein synthesis in mammals
S.R. Kimball and L.S. Jefferson
21
mTOR, translational control and human disease
A.R. Tee and J. Blenis
29
The implications of structured 5 untranslated regions on translation and disease
B.M. Pickering and A.E. Willis
39
Mechanisms of translational control by the 3 UTR in development and differentiation
C.H. de Moor, H. Meijer and S. Lissenden
49
The role of the AU-rich elements of mRNAs in controlling translation
E. Espel
59
GATA Transcription Factors in Heart and Blood Cell Development and Disease Guest Editor: Robert A. Schulz GATA transcription factors in heart and blood cell development and disease
R.A. Schulz
69
Regulation of GATA gene expression during vertebrate development
J.B.E. Burch
71
The roles of GATA-4, -5 and -6 in vertebrate heart development
T. Peterkin, A. Gibson, M. Loose and R. Patient
83
Using the zebrafish model to study GATA transcription factors
A. Heicklen-Klein, L.J. McReynolds and T. Evans
95
IV
VOLUME CONTENTS 2005
GATA factors in Drosophila heart and blood cell development
R.P. Sorrentino, K.M. Gajewski and R.A. Schulz
107
Coregulation of GATA factors by the Friend of GATA (FOG) family of multitype zinc finger proteins
A.B. Cantor and S.H. Orkin
117
Gene expression regulation and domain function of hematopoietic GATA factors
R. Shimizu and M. Yamamoto
129
G ATA 1 in normal and malignant hematopoiesis
J.D. Crispino
137
Erratum
J. Idkowiak, G. Weisheit and C. Viebahn
149
Volume 16 Number 2
April 2005 Table of Contents Cellular Cholesterol Metabolism and Trafficking Guest Editor: Elina Ikonen
Introduction: New aspects of cellular sterol metabolism and transport
E. Ikonen
151
Sterol homeostasis in the budding yeast, Saccharomyces cerevisiae
A.L. Henneberry and S.L. Sturley
155
Caveolin, cholesterol, and lipid bodies
S. Martin and R.G. Parton
163
Requirement of sterols in the life cycle of the nematode Caenorhabditis elegans
E.V. Entchev and T.V. Kurzchalia
175
Molecular mechanisms of cholesterol absorption and transport in the intestine
D.Y. Hui and P.N. Howles
183
Cholesterol homeostasis in neurons and glial cells
J.E. Vance, H. Hayashi and B. Karten
193
Apoptosis and Development Guest Editor: Kim McCall Programmed cell death in development
K. McCall
213
From oogenesis through gastrulation: developmental regulation of apoptosis
J. Greenwood and J. Gautier
215
Genetic control of programmed cell death in Drosophila melanogaster
P. Cashio, T.V. Lee and A. Bergmann
225
Volume Contents, Author & Keyword Index 2005
V
Mechanisms of steroid-triggered programmed cell death in Drosophila
V.P. Yin and C.S. Thummel
237
Programmed cell death in the germline
J.S. Baum, J.P. St. George and K. McCall
245
Programmed cell death in the embryonic vertebrate limb
V. Zuzarte-Luis and J.M. Hurle
261
Programmed cell death during amphibian metamorphosis
K. Nakajima, K. Fujimoto and Y. Yaoita
271
Expanding roles of programmed cell death in mammalian neurodevelopment
D. De Zio, L. Giunta, M. Corvaro, E. Ferraro and F. Cecconi
281
Clearance of apoptotic cells in Caenorhabditis elegans
P.M. Mangahas and Z. Zhou
295
Corrigendum
G.J. King
307
Volume 16 Number 3
June 2005 Table of Contents Cell Cycle and Development Guest Editor: R.Y.C. Poon
Editorial
R.Y.C. Poon
309
New insights into cyclins, CDKs, and cell cycle control
I. Sánchez and B.D. Dynlacht
311
Regulation of the cell cycle by SCF-type ubiquitin ligases
K.I. Nakayama and K. Nakayama
323
A roller coaster ride with the mitotic cyclins
T.K. Fung and R.Y.C. Poon
335
Eukaryotic origins of DNA replication: could you please be more specific?
C. Cvetic and J.C. Walter
343
The S phase checkpoint: When the crowd meets at the fork
V. Gottifredi and C. Prives
355
Inhibition of the cell cycle with chemical inhibitors: A targeted approach
J.P.I. Welburn and J.A. Endicott
369
Cell Cycle and Development Guest Editor: Edward M. Levine Cell cycle and development: focus on organogenesis and differentiation
E.M. Levine
383
VI
VOLUME CONTENTS 2005
The developmental context of cell-cycle control in plants
S.M. de Jager, S. Maughan, W. Dewitte, S. Scofield and J.A.H. Murray
385
The cell cycle and development: Lessons from C. elegans
D.S. Fay
397
Regulation of proliferation during central nervous system development
S.L. Donovan and M.A. Dyer
407
When timing is everything: role of cell cycle regulation in asymmetric division
S.N. Prokopenko and W. Chia
423
Beyond proliferation—cell cycle control of neuronal survival and differentiation in the developing mammalian brain
E.B.E. Becker and A. Bonni
439
Cell cycle control by homeobox genes in development and disease
F. Del Bene and J. Wittbrodt
449
Volume 16 Numbers 4–5
August/October 2005 Table of Contents Biology of Hypoxia Guest Editor: Randall S. Johnson R.S. Johnson
461
COPing with hypoxia
P. Mikus and W. Zundel
462
Reactive oxygen species in the control of hypoxiainducible factor-mediated gene expression
T. Kietzmann and A. Görlach
474
Control of the hypoxic response through regulation of mRNA translation
B.G. Wouters, T. van den Beucken, M.G. Magagnin, M. Koritzinsky, D. Fels and C. Koumenis
487
The interaction between HIF-1 and AP-1 transcription factors in response to low oxygen
K.R. Laderoute
502
Hypoxia-dependent activation of HIF into a transcriptional regulator
J.L. Ruas and L. Poellinger
514
P.H. Maxwell
523
Introduction
Hypoxic Signalling
Hypoxic Functioning The HIF pathway in cancer
Volume Contents, Author & Keyword Index 2005
VII
Neuroprotection by hypoxic preconditioning: HIF-1 and erythropoietin protect from retinal degeneration
C. Grimm, D.M. Hermann, A. Bogdanova, S. Hotop, Ü. Kilic, A. Wenzel, E. Kilic and M. Gassmann
531
Hypoxia and HIF-1 in chondrogenesis
E. Schipani
539
The hypoxic testis and post-meiotic expression of PAS domain proteins
R.H. Wenger and D.M. Katschinski
547
Hypoxia-induced dedifferentiation of tumor cells – A mechanism behind heterogeneity and aggressiveness of solid tumors
H. Axelson, E. Fredlund, M. Ovenberger, G. Landberg and S. Påhlman
554
The VHL tumor suppressor in development and disease: Functional studies in mice by conditional gene targeting
V.H. Haase
564
Myogenesis and Muscle Disease Guest Editor: Michael A. Rudnicki
Molecular regulation of satellite cell function
C.E. Holterman and M.A. Rudnicki
575
MyoD and the transcriptional control of myogenesis
C.A. Berkes and S.J. Tapscott
585
Signaling to the chromatin during skeletal myogenesis: Novel targets for pharmacological modulation of gene expression
S.V. Forcales and P.L. Puri
596
The regulation of Notch signaling in muscle stem cell activation and postnatal myogenesis
D. Luo, V.M. Renault and T.A. Rando
612
Satellite cells, myoblasts and other occasional myogenic progenitors: Possible origin, phenotypic features and role in muscle regeneration
G. Cossu and S. Biressi
623
Circulating myogenic progenitors and muscle repair
M.A. Long, S.Y. Corbel and F.M.V. Rossi
632
Volume 16 Number 6
December 2005 Table of Contents Molecular Determination of the Neural Crest Guest Editor: Roberto Mayor
Molecular specification of the neural crest
R. Mayor
641
VIII
VOLUME CONTENTS 2005
Early steps in neural crest specification
M. Barembaum and M. Bronner-Fraser
642
Genetic network during neural crest induction: From cell specification to cell survival
B. Steventon, C. Carmona-Fontaine and R. Mayor
647
How to become neural crest: From segregation to delamination
A.V. Morales, J.A. Barbas and M.A. Nieto
655
Notch in the pathway: The roles of Notch signaling in neural crest development
R.A. Cornell and J.S. Eisen
663
Reiterated Wnt and BMP signals in neural crest development
D.W. Raible and J.W. Ragland
673
Specification of neural crest cell formation and migration in mouse embryos
P.A. Trainor
683
Sox proteins and neural crest development
C.-S. Hong and J.-P. Saint-Jeannet
694
Cardiac neural crest
J.Z. Stoller and J.A. Epstein
704
Volume Contents and Index to Volume 16, 2005
I
AUTHOR INDEX 2005 Axelson H, 554 Barbas JA, 655 Barembaum M, 642 Baum JS, 245 Becker EBE, 439 Bergmann A, 225 Berkes CA, 585 Biressi S, 623 Blenis J, 29 Bogdanova A, 531 Bonni A, 439 Bronner-Fraser M, 642 Burch JBE, 71 Cantor AB, 117 Carmona-Fontaine C, 647 Cashio P, 225 Cecconi F, 281 Chia W, 423 Clemens MJ, 13 Corbel SY, 632 Cornell RA, 663 Corvaro M, 281 Cossu G, 623 Crispino JD, 137 Cvetic C, 343 De Zio D, 281 de Jager SM, 385 Del Bene F, 449 de Moore CH, 49 Dewitte W, 385 Donovan SL, 407 Dyer MA, 407 Dynlacht BD, 311 Eisen JS, 663 Endicott JA, 369 Entchev EV, 175 Epstein JA, 704 Espel E, 59 Evans T, 95 Fay DS, 397 Fels D, 487 Ferraro E, 281 Forcales SV, 596 Fredlund E, 554 Fujimoto K, 271 Fung TK, 335 Gajewski KM, 107 Gassmann M, 531 Gautier J, 215 Gibson A, 83
Giunta L, 281 Gottifredi V, 355 Greenwood J, 215 Grimm C, 531 Görlach A, 474 Haase VH, 564 Hayashi H, 193 Heicklen-Klein A, 95 Henneberry AL, 155 Hermann DM, 531 Holterman CE, 575 Hong C-S, 694 Hotop S, 531 Howles PN, 183 Hui DY, 183 Hurle JM, 261 Idkowiak J, 149 Ikonen E, 151 Jefferson LS, 21 Johnson RS, 461 Karten B, 193 Katschinski DM, 547 Kietzmann T, 474 Kilic Ü, 531 Kilic E, 531 Kimball SR, 21 King GJ, 307 Koritzinsky M, 487 Koumenis C, 487 Kurzchalia TV, 175 Laderoute KR, 502 Landberg G, 554 Lee TV, 225 Levine EM, 383 Lissenden S, 49 Long MA, 632 Loose M, 83 Luo D, 612 Magagnin MG, 487 Mangahas PM, 295 Martin S, 163 Maughan S, 385 Maxwell PH, 523 Mayor R, 641, 647 McCall K, 213, 245 McReynolds LJ, 95 Meijer H, 49 Mikus P, 462 Morales AV, 655 Murray JAH, 385
Nakajima K, 271 Nakayama K, 323 Nakayama KI, 323 Nieto MA, 655 Orkin SH, 117 Ovenberger M, 554 Parton RG, 163 Patient R, 83 Peterkin T, 83 Påhlman S, 554 Pickering BM, 39 Poellinger L, 514 Poon RYC, 309, 335 Prives C, 355 Prokopenko SN, 423 Proud CG, 1, 3 Puri PL, 596 Ragland JW, 673 Raible DW, 673 Rando TA, 612 Renault VM, 612 Rossi FMV, 632 Ruas JL, 514 Rudnicki MA, 575 Saint-Jeannet J-P, 694 Sánchez I, 311 Schipani E, 539 Schulz RA, 69, 107 Scofield S, 385 Shimizu R, 129 Sorrentino RP, 107 St. George JP, 245 Steventon B, 647 Stoller JZ, 704 Sturley SL, 155 Tapscott SJ, 585 Tee AR, 29 Thummel CS, 237 Trainor PA, 683 van den Beucken T, 487 Vance JE, 193 Viebahn C, 149 Walter JC, 343 Weisheit G, 149 Welburn JPI, 369 Wenger RH, 547 Wenzel A, 531
X
Willis AE, 39 Wittbrodt J, 449 Wouters BG, 487
AUTHOR INDEX 2005
Yamamoto M, 129 Yaoita Y, 271 Yin VP, 237
Zhou Z, 295 Zundel W, 462 Zuzarte-Luis V, 261
KEYWORD INDEX 2005 Alzheimer’s disease, 193 Amino acid, 3 Amphibian, 271 Anaphase-promoting complex, 335, 439 Angiogenesis, 523 AP-1, 502 Apoptosis, 13, 215, 225, 245, 261, 271, 439, 531 Apoptosome, 281 Arabidopsis, 385 ATF4, 487 ATM/ATR, 355 Autophagy, 237 Axon growth, 439 BMP, 642, 647 BMPs, 261 Bone marrow, 632 Breast carcinoma, 554 C. elegans, 295 Caenorhabditis elegans, 175, 397 Cancer, 449, 523 Cardiac development, 704 Cardiac, 117 Cardiogenesis, 95 Caspases, 225, 261, 281 Caveolin, 163 CDC2, 439 CDK, 311, 385 ced, 295 Cell corpse, 295 Cell cycle control, 335 Cell cycle, 215, 311, 323, 343, 369, 397, 449, 49, 655 Cell division, 385 Cell fate determination, 423 Cell proliferation, 449 Cell stress, 13 Cell survival, 647, 655 Cerebellum, 407 Checkpoints, 215 Chick, 663 Chk1/Chk2, 355 Cholesterol transporter, 183 Cholesterol, 155, 163, 175, 193 CHOP, 487 Chromatin, 585, 596 Coactivators, 514 Complementation rescue, 129 Conditional knock out mice, 564 Congenital heart disease, 704 COP9 signalosome, 462
Cortex, 407 COX-2, 59 Craniofacial, 683 CSN, 462 CSN5, 462 Cyclin D, 407 Cyclin, 311, 335, 369, 385 Cyclin-dependent kinase, 423 Cyclin-dependent kinases, 335 Dauer formation, 175 Delta, 663 Deltex, 612, 663 Development and differentiation, 49 Development, 83, 215, 397, 585 Differentiation, 385, 554 DiGeorge syndrome, 704 DNA damage, 355 DNA degradation, 295 DNA replication, 343, 355 Dronc, 225 Drosophila heart development, 107 Drosophila, 225, 423 4E-BP1, 29 Ecdysone, 237 Ectoderm, 663 eIF2, 21 eIF4E, 487 eIF4F, 21 Embryonic cancer, 281 Endocardium, 83 Engulfment, 295 Enhancers, 71 Epithelial-mesenchymal transition (EMT), 655 Ergosterol, 155 Erythrocytes, 137 Faust, 95 F-box protein, 323 FGF, 642, 647 FOG, 117 Fusion, 632 GATA, 71, 117 GATA-1, 129, 137 GATA-2, 129 mGCN2, 21 Gene expression, 49, 585 Gene regulation, 237 Gene regulatory networks, 129 Genetic cascade, 647
Germline, 245 Glia, 193 Glycolysis, 547 Hemangioma, 564 Hematopoiesis, 95, 117, 137 Hemocyte lineage specification, 107 Hid, 225 HIF, 474, 523 HIF-1, 502, 514 HIF-1, 539, 554 HIF-2, 554 Homeodomain, 449 Hypoxia, 462, 474, 487, 523, 539, 554 Hypoxia/anoxia, 502 Hypoxia-inducible factor (HIF), 564 Hypoxia-inducible factor-1, 531 IAPs, 225 Induction, 683, 694 Inflammation, 59 Inhibitors, 369 Initiation factor, 3, 13 Initiation, 343 Internal ribosome entry, 39 Intracellular transport, 183 IRES, 39 Ischemia, 531 Jab1, 462 Kinase, 311, 369 Knockout, 281 Lateral inhibition, 663 Leaf development, 385 Leukemia, 137 Lipase, 183 Lipid body, 163 Megakaryocytes, 137 Mesoangioblasts, 623 Metamorphosis, 271 Migration, 683, 694 Molting, 175 Morphogenesis, 261 Mouse, 683 Muscle regeneration, 596, 623 Muscle repair, 632 Muscle satellite cells, 623 Myocardium, 83 Myogenesis, 585, 612 Myogenic regulatory factor, 575
XII
NADPH oxidase, 474 Neural crest cells, 655 Neural crest, 642, 647, 663, 683, 694 Neural precursor, 281 Neuroblast, 423 Neuroblastoma, 554 Neurodegeneration, 3, 155 Neuroepithelium, 673 Neurons, 193 Neurotrophic factors, 439 Niemann-Pick C disease, 193 Notch signal, 663 Notch, 612, 663, 704 Numb, 612 Oogenesis, 245 ORC, 343 Origins, 343 Oxygen sensing, 474 Oxygen, 547 P38 MAPK, 59 p38, 596 p53, 369 Pannier, 107 Pax-7, 575 PERK, 487 Phagocytosis, 295 Photoreceptor, 531 Plasticity, 632 Post chylomicron transport vesicle, 183 Programmed cell death, 215, 225, 245, 271, 295 Prolyl-4-hydroxylation, 547 Proneural, 663 Protein kinase, 3 Protein synthesis, 13 Protein–protein interactions, 83
KEYWORD INDEX 2005
Proteolysis, 323 pVHL, 514 Rapamycin, 29 Rb, 407 Reactive oxygen species, 474 Reaper, 225 Regulation, 163 Reiterated signals, 673 Renal cell cancer, 564 Retina, 407 Retinal ganglion cells, 531 Retinoic acid, 647 Review, 397 mRNA translation, 21 Root development, 385 S phase checkpoint, 355 S6K1, 29 Satellite cell, 575, 612 SCF complex, 323 Self-renewal, 575 Semaphorin, 704 Sensory organ precursor, 423 Serpent, 107 Signal transduction, 596 Signaling pathways, 673 Skeletal muscle, 575 Skeletal myoblasts, 623 Skeletal myogenesis, 623 Slug, 642 Sox, 694 SoxE, 642 Spermatogenesis, 245, 547 Spindle-assembly checkpoint, 335 Steroid hormones, 237 Sterols, 175 Stress, 3 Subcellular distribution, 514
Substrate, 311 Sympathetic nervous system, 554 Targeting, 163 Thyroid hormone, 271 TNF, 59 mTOR, 21, 29 Transactivation, 514 Transcription factors, 83, 655 Transcription, 117, 596 Transdifferentiation, 632 Transforming growth factor, 704 Transgenic reporter fish, 95 translation, 39 Translation, 49, 59, 487 Transport, 155 TSC, 29 Ubiquitin, 323 U-shaped, 107 5 Untranslated region, 39 3 UTR, 49 VEGF, Chondrocytes, 539 VHL, 462, 523, 539 Viral infection, 13 Virus, 3 Vlad tepes, 95 von Hippel–Lindau (VHL) tumor suppressor, 564 Wnt, 642, 647 Xenopus, 663 Yeast, 155 Zebrafish, 663
Cell & Developmental Biology Volume Contents and Index to Volume 16, 2005
doi:10.1016/S1084-9521(05)00109-6
seminars in CELL & DEVELOPMENTAL BIOLOGY Editor-in-Chief John Davey Department of Biological Sciences University of Warwick Coventry CV4 7AL, UK
Editorial Advisory Board David R Garrod University of Manchester UK
William J Lennarz State University of New York at Stony Brook USA
Robert A. Schulz The University of Texas M.D. Anderson Cancer Center USA
David R. Garrod University of Manchester UK
Bernard Maro CNRS, Université Paris, France
Fiona Watt Keratinocyte Laboratory London Research Institute UK
William Jeffery Bodega Marine Laboratory University of Maryland USA
Ben Scheres Utrecht University The Netherlands
Editorial correspondence should be addressed to: Seminars in Cell & Developmental Biology, Editorial Office, 525 B Street, Suite 1900, San Diego, CA 92101-4495, USA. Please note that this journal is a commissioned review journal and does not accept unsolicited articles. If you are interested in acting as a guest editor, please contact the Editorial Office: [email protected] If you have been invited to write a review, please refer to the online guide for authors, which is available via the Author Gateway, http://authors.elsevier.com USA mailing notice: Seminars in Cell & Developmental Biology (ISSN 1084-9521) is published bimonthly in February, April, June, August, October and December, by Elsevier Ltd. (P.O. Box 211, 1000 AE Amsterdam, The Netherlands). Annual subscription price including postages €594. Periodical postage rate paid at Jamaica, NY 11431. USA POSTMASTER: Send address changes to Seminars in Cell & Developmental Biology, Elsevier, 6277 Sea Harbour Drive, Orlando, FL 32887-4900. AIRFREIGHT AND MAILING in the USA by Publications Expediting Inc., 200 Meacham Avenue, Elmont, NY 11003. For enquiries relating to the submission of articles (including electronic submission where available) please visit Elsevier’s Author Gateway at http://authors.elsevier.com. The Author Gateway also provides the facility to track accepted articles and set up e-mail alerts to inform you of when an article’s status has changed, as well as detailed artwork guidelines, copyright information, frequently asked questions and more. Contact details for questions arising after acceptance of an article, especially those relating to proofs, are provided after registration of an article for publication. Journal is indexed and included in Index Medicus, MEDLINE on the MEDLARS system. The home page for Seminars in Cell & Developmental Biology can be found at http://www.elsevier.com/locate/semcdb The Guide for Authors can be found at: http://www.elsevier.com/locate/semcdb
seminars in CELL & DEVELOPMENTAL BIOLOGY Volume 16 Number 1
February 2005 Table of Contents Protein Synthesis in Health and Disease Guest Editor: Chris G. Proud
Editorial
C.G. Proud
1
eIF2 and the control of cell physiology
C.G. Proud
3
Translational control in virus-infected cells: models for cellular stress responses
M.J. Clemens
13
Role of amino acids in the translational control of protein synthesis in mammals
S.R. Kimball and L.S. Jefferson
21
mTOR, translational control and human disease
A.R. Tee and J. Blenis
29
The implications of structured 5 untranslated regions on translation and disease
B.M. Pickering and A.E. Willis
39
Mechanisms of translational control by the 3 UTR in development and differentiation
C.H. de Moor, H. Meijer and S. Lissenden
49
The role of the AU-rich elements of mRNAs in controlling translation
E. Espel
59
GATA Transcription Factors in Heart and Blood Cell Development and Disease Guest Editor: Robert A. Schulz GATA transcription factors in heart and blood cell development and disease
R.A. Schulz
69
Regulation of GATA gene expression during vertebrate development
J.B.E. Burch
71
The roles of GATA-4, -5 and -6 in vertebrate heart development
T. Peterkin, A. Gibson, M. Loose and R. Patient
83
Using the zebrafish model to study GATA transcription factors
A. Heicklen-Klein, L.J. McReynolds and T. Evans
95
IV
VOLUME CONTENTS 2005
GATA factors in Drosophila heart and blood cell development
R.P. Sorrentino, K.M. Gajewski and R.A. Schulz
107
Coregulation of GATA factors by the Friend of GATA (FOG) family of multitype zinc finger proteins
A.B. Cantor and S.H. Orkin
117
Gene expression regulation and domain function of hematopoietic GATA factors
R. Shimizu and M. Yamamoto
129
G ATA 1 in normal and malignant hematopoiesis
J.D. Crispino
137
Erratum
J. Idkowiak, G. Weisheit and C. Viebahn
149
Volume 16 Number 2
April 2005 Table of Contents Cellular Cholesterol Metabolism and Trafficking Guest Editor: Elina Ikonen
Introduction: New aspects of cellular sterol metabolism and transport
E. Ikonen
151
Sterol homeostasis in the budding yeast, Saccharomyces cerevisiae
A.L. Henneberry and S.L. Sturley
155
Caveolin, cholesterol, and lipid bodies
S. Martin and R.G. Parton
163
Requirement of sterols in the life cycle of the nematode Caenorhabditis elegans
E.V. Entchev and T.V. Kurzchalia
175
Molecular mechanisms of cholesterol absorption and transport in the intestine
D.Y. Hui and P.N. Howles
183
Cholesterol homeostasis in neurons and glial cells
J.E. Vance, H. Hayashi and B. Karten
193
Apoptosis and Development Guest Editor: Kim McCall Programmed cell death in development
K. McCall
213
From oogenesis through gastrulation: developmental regulation of apoptosis
J. Greenwood and J. Gautier
215
Genetic control of programmed cell death in Drosophila melanogaster
P. Cashio, T.V. Lee and A. Bergmann
225
Volume Contents, Author & Keyword Index 2005
V
Mechanisms of steroid-triggered programmed cell death in Drosophila
V.P. Yin and C.S. Thummel
237
Programmed cell death in the germline
J.S. Baum, J.P. St. George and K. McCall
245
Programmed cell death in the embryonic vertebrate limb
V. Zuzarte-Luis and J.M. Hurle
261
Programmed cell death during amphibian metamorphosis
K. Nakajima, K. Fujimoto and Y. Yaoita
271
Expanding roles of programmed cell death in mammalian neurodevelopment
D. De Zio, L. Giunta, M. Corvaro, E. Ferraro and F. Cecconi
281
Clearance of apoptotic cells in Caenorhabditis elegans
P.M. Mangahas and Z. Zhou
295
Corrigendum
G.J. King
307
Volume 16 Number 3
June 2005 Table of Contents Cell Cycle and Development Guest Editor: R.Y.C. Poon
Editorial
R.Y.C. Poon
309
New insights into cyclins, CDKs, and cell cycle control
I. Sánchez and B.D. Dynlacht
311
Regulation of the cell cycle by SCF-type ubiquitin ligases
K.I. Nakayama and K. Nakayama
323
A roller coaster ride with the mitotic cyclins
T.K. Fung and R.Y.C. Poon
335
Eukaryotic origins of DNA replication: could you please be more specific?
C. Cvetic and J.C. Walter
343
The S phase checkpoint: When the crowd meets at the fork
V. Gottifredi and C. Prives
355
Inhibition of the cell cycle with chemical inhibitors: A targeted approach
J.P.I. Welburn and J.A. Endicott
369
Cell Cycle and Development Guest Editor: Edward M. Levine Cell cycle and development: focus on organogenesis and differentiation
E.M. Levine
383
VI
VOLUME CONTENTS 2005
The developmental context of cell-cycle control in plants
S.M. de Jager, S. Maughan, W. Dewitte, S. Scofield and J.A.H. Murray
385
The cell cycle and development: Lessons from C. elegans
D.S. Fay
397
Regulation of proliferation during central nervous system development
S.L. Donovan and M.A. Dyer
407
When timing is everything: role of cell cycle regulation in asymmetric division
S.N. Prokopenko and W. Chia
423
Beyond proliferation—cell cycle control of neuronal survival and differentiation in the developing mammalian brain
E.B.E. Becker and A. Bonni
439
Cell cycle control by homeobox genes in development and disease
F. Del Bene and J. Wittbrodt
449
Volume 16 Numbers 4–5
August/October 2005 Table of Contents Biology of Hypoxia Guest Editor: Randall S. Johnson R.S. Johnson
461
COPing with hypoxia
P. Mikus and W. Zundel
462
Reactive oxygen species in the control of hypoxiainducible factor-mediated gene expression
T. Kietzmann and A. Görlach
474
Control of the hypoxic response through regulation of mRNA translation
B.G. Wouters, T. van den Beucken, M.G. Magagnin, M. Koritzinsky, D. Fels and C. Koumenis
487
The interaction between HIF-1 and AP-1 transcription factors in response to low oxygen
K.R. Laderoute
502
Hypoxia-dependent activation of HIF into a transcriptional regulator
J.L. Ruas and L. Poellinger
514
P.H. Maxwell
523
Introduction
Hypoxic Signalling
Hypoxic Functioning The HIF pathway in cancer
Volume Contents, Author & Keyword Index 2005
VII
Neuroprotection by hypoxic preconditioning: HIF-1 and erythropoietin protect from retinal degeneration
C. Grimm, D.M. Hermann, A. Bogdanova, S. Hotop, Ü. Kilic, A. Wenzel, E. Kilic and M. Gassmann
531
Hypoxia and HIF-1 in chondrogenesis
E. Schipani
539
The hypoxic testis and post-meiotic expression of PAS domain proteins
R.H. Wenger and D.M. Katschinski
547
Hypoxia-induced dedifferentiation of tumor cells – A mechanism behind heterogeneity and aggressiveness of solid tumors
H. Axelson, E. Fredlund, M. Ovenberger, G. Landberg and S. Påhlman
554
The VHL tumor suppressor in development and disease: Functional studies in mice by conditional gene targeting
V.H. Haase
564
Myogenesis and Muscle Disease Guest Editor: Michael A. Rudnicki
Molecular regulation of satellite cell function
C.E. Holterman and M.A. Rudnicki
575
MyoD and the transcriptional control of myogenesis
C.A. Berkes and S.J. Tapscott
585
Signaling to the chromatin during skeletal myogenesis: Novel targets for pharmacological modulation of gene expression
S.V. Forcales and P.L. Puri
596
The regulation of Notch signaling in muscle stem cell activation and postnatal myogenesis
D. Luo, V.M. Renault and T.A. Rando
612
Satellite cells, myoblasts and other occasional myogenic progenitors: Possible origin, phenotypic features and role in muscle regeneration
G. Cossu and S. Biressi
623
Circulating myogenic progenitors and muscle repair
M.A. Long, S.Y. Corbel and F.M.V. Rossi
632
Volume 16 Number 6
December 2005 Table of Contents Molecular Determination of the Neural Crest Guest Editor: Roberto Mayor
Molecular specification of the neural crest
R. Mayor
641
VIII
VOLUME CONTENTS 2005
Early steps in neural crest specification
M. Barembaum and M. Bronner-Fraser
642
Genetic network during neural crest induction: From cell specification to cell survival
B. Steventon, C. Carmona-Fontaine and R. Mayor
647
How to become neural crest: From segregation to delamination
A.V. Morales, J.A. Barbas and M.A. Nieto
655
Notch in the pathway: The roles of Notch signaling in neural crest development
R.A. Cornell and J.S. Eisen
663
Reiterated Wnt and BMP signals in neural crest development
D.W. Raible and J.W. Ragland
673
Specification of neural crest cell formation and migration in mouse embryos
P.A. Trainor
683
Sox proteins and neural crest development
C.-S. Hong and J.-P. Saint-Jeannet
694
Cardiac neural crest
J.Z. Stoller and J.A. Epstein
704
Volume Contents and Index to Volume 16, 2005
I
AUTHOR INDEX 2005 Axelson H, 554 Barbas JA, 655 Barembaum M, 642 Baum JS, 245 Becker EBE, 439 Bergmann A, 225 Berkes CA, 585 Biressi S, 623 Blenis J, 29 Bogdanova A, 531 Bonni A, 439 Bronner-Fraser M, 642 Burch JBE, 71 Cantor AB, 117 Carmona-Fontaine C, 647 Cashio P, 225 Cecconi F, 281 Chia W, 423 Clemens MJ, 13 Corbel SY, 632 Cornell RA, 663 Corvaro M, 281 Cossu G, 623 Crispino JD, 137 Cvetic C, 343 De Zio D, 281 de Jager SM, 385 Del Bene F, 449 de Moore CH, 49 Dewitte W, 385 Donovan SL, 407 Dyer MA, 407 Dynlacht BD, 311 Eisen JS, 663 Endicott JA, 369 Entchev EV, 175 Epstein JA, 704 Espel E, 59 Evans T, 95 Fay DS, 397 Fels D, 487 Ferraro E, 281 Forcales SV, 596 Fredlund E, 554 Fujimoto K, 271 Fung TK, 335 Gajewski KM, 107 Gassmann M, 531 Gautier J, 215 Gibson A, 83
Giunta L, 281 Gottifredi V, 355 Greenwood J, 215 Grimm C, 531 Görlach A, 474 Haase VH, 564 Hayashi H, 193 Heicklen-Klein A, 95 Henneberry AL, 155 Hermann DM, 531 Holterman CE, 575 Hong C-S, 694 Hotop S, 531 Howles PN, 183 Hui DY, 183 Hurle JM, 261 Idkowiak J, 149 Ikonen E, 151 Jefferson LS, 21 Johnson RS, 461 Karten B, 193 Katschinski DM, 547 Kietzmann T, 474 Kilic Ü, 531 Kilic E, 531 Kimball SR, 21 King GJ, 307 Koritzinsky M, 487 Koumenis C, 487 Kurzchalia TV, 175 Laderoute KR, 502 Landberg G, 554 Lee TV, 225 Levine EM, 383 Lissenden S, 49 Long MA, 632 Loose M, 83 Luo D, 612 Magagnin MG, 487 Mangahas PM, 295 Martin S, 163 Maughan S, 385 Maxwell PH, 523 Mayor R, 641, 647 McCall K, 213, 245 McReynolds LJ, 95 Meijer H, 49 Mikus P, 462 Morales AV, 655 Murray JAH, 385
Nakajima K, 271 Nakayama K, 323 Nakayama KI, 323 Nieto MA, 655 Orkin SH, 117 Ovenberger M, 554 Parton RG, 163 Patient R, 83 Peterkin T, 83 Påhlman S, 554 Pickering BM, 39 Poellinger L, 514 Poon RYC, 309, 335 Prives C, 355 Prokopenko SN, 423 Proud CG, 1, 3 Puri PL, 596 Ragland JW, 673 Raible DW, 673 Rando TA, 612 Renault VM, 612 Rossi FMV, 632 Ruas JL, 514 Rudnicki MA, 575 Saint-Jeannet J-P, 694 Sánchez I, 311 Schipani E, 539 Schulz RA, 69, 107 Scofield S, 385 Shimizu R, 129 Sorrentino RP, 107 St. George JP, 245 Steventon B, 647 Stoller JZ, 704 Sturley SL, 155 Tapscott SJ, 585 Tee AR, 29 Thummel CS, 237 Trainor PA, 683 van den Beucken T, 487 Vance JE, 193 Viebahn C, 149 Walter JC, 343 Weisheit G, 149 Welburn JPI, 369 Wenger RH, 547 Wenzel A, 531
X
Willis AE, 39 Wittbrodt J, 449 Wouters BG, 487
AUTHOR INDEX 2005
Yamamoto M, 129 Yaoita Y, 271 Yin VP, 237
Zhou Z, 295 Zundel W, 462 Zuzarte-Luis V, 261
KEYWORD INDEX 2005 Alzheimer’s disease, 193 Amino acid, 3 Amphibian, 271 Anaphase-promoting complex, 335, 439 Angiogenesis, 523 AP-1, 502 Apoptosis, 13, 215, 225, 245, 261, 271, 439, 531 Apoptosome, 281 Arabidopsis, 385 ATF4, 487 ATM/ATR, 355 Autophagy, 237 Axon growth, 439 BMP, 642, 647 BMPs, 261 Bone marrow, 632 Breast carcinoma, 554 C. elegans, 295 Caenorhabditis elegans, 175, 397 Cancer, 449, 523 Cardiac development, 704 Cardiac, 117 Cardiogenesis, 95 Caspases, 225, 261, 281 Caveolin, 163 CDC2, 439 CDK, 311, 385 ced, 295 Cell corpse, 295 Cell cycle control, 335 Cell cycle, 215, 311, 323, 343, 369, 397, 449, 49, 655 Cell division, 385 Cell fate determination, 423 Cell proliferation, 449 Cell stress, 13 Cell survival, 647, 655 Cerebellum, 407 Checkpoints, 215 Chick, 663 Chk1/Chk2, 355 Cholesterol transporter, 183 Cholesterol, 155, 163, 175, 193 CHOP, 487 Chromatin, 585, 596 Coactivators, 514 Complementation rescue, 129 Conditional knock out mice, 564 Congenital heart disease, 704 COP9 signalosome, 462
Cortex, 407 COX-2, 59 Craniofacial, 683 CSN, 462 CSN5, 462 Cyclin D, 407 Cyclin, 311, 335, 369, 385 Cyclin-dependent kinase, 423 Cyclin-dependent kinases, 335 Dauer formation, 175 Delta, 663 Deltex, 612, 663 Development and differentiation, 49 Development, 83, 215, 397, 585 Differentiation, 385, 554 DiGeorge syndrome, 704 DNA damage, 355 DNA degradation, 295 DNA replication, 343, 355 Dronc, 225 Drosophila heart development, 107 Drosophila, 225, 423 4E-BP1, 29 Ecdysone, 237 Ectoderm, 663 eIF2, 21 eIF4E, 487 eIF4F, 21 Embryonic cancer, 281 Endocardium, 83 Engulfment, 295 Enhancers, 71 Epithelial-mesenchymal transition (EMT), 655 Ergosterol, 155 Erythrocytes, 137 Faust, 95 F-box protein, 323 FGF, 642, 647 FOG, 117 Fusion, 632 GATA, 71, 117 GATA-1, 129, 137 GATA-2, 129 mGCN2, 21 Gene expression, 49, 585 Gene regulation, 237 Gene regulatory networks, 129 Genetic cascade, 647
Germline, 245 Glia, 193 Glycolysis, 547 Hemangioma, 564 Hematopoiesis, 95, 117, 137 Hemocyte lineage specification, 107 Hid, 225 HIF, 474, 523 HIF-1, 502, 514 HIF-1, 539, 554 HIF-2, 554 Homeodomain, 449 Hypoxia, 462, 474, 487, 523, 539, 554 Hypoxia/anoxia, 502 Hypoxia-inducible factor (HIF), 564 Hypoxia-inducible factor-1, 531 IAPs, 225 Induction, 683, 694 Inflammation, 59 Inhibitors, 369 Initiation factor, 3, 13 Initiation, 343 Internal ribosome entry, 39 Intracellular transport, 183 IRES, 39 Ischemia, 531 Jab1, 462 Kinase, 311, 369 Knockout, 281 Lateral inhibition, 663 Leaf development, 385 Leukemia, 137 Lipase, 183 Lipid body, 163 Megakaryocytes, 137 Mesoangioblasts, 623 Metamorphosis, 271 Migration, 683, 694 Molting, 175 Morphogenesis, 261 Mouse, 683 Muscle regeneration, 596, 623 Muscle repair, 632 Muscle satellite cells, 623 Myocardium, 83 Myogenesis, 585, 612 Myogenic regulatory factor, 575
XII
NADPH oxidase, 474 Neural crest cells, 655 Neural crest, 642, 647, 663, 683, 694 Neural precursor, 281 Neuroblast, 423 Neuroblastoma, 554 Neurodegeneration, 3, 155 Neuroepithelium, 673 Neurons, 193 Neurotrophic factors, 439 Niemann-Pick C disease, 193 Notch signal, 663 Notch, 612, 663, 704 Numb, 612 Oogenesis, 245 ORC, 343 Origins, 343 Oxygen sensing, 474 Oxygen, 547 P38 MAPK, 59 p38, 596 p53, 369 Pannier, 107 Pax-7, 575 PERK, 487 Phagocytosis, 295 Photoreceptor, 531 Plasticity, 632 Post chylomicron transport vesicle, 183 Programmed cell death, 215, 225, 245, 271, 295 Prolyl-4-hydroxylation, 547 Proneural, 663 Protein kinase, 3 Protein synthesis, 13 Protein–protein interactions, 83
KEYWORD INDEX 2005
Proteolysis, 323 pVHL, 514 Rapamycin, 29 Rb, 407 Reactive oxygen species, 474 Reaper, 225 Regulation, 163 Reiterated signals, 673 Renal cell cancer, 564 Retina, 407 Retinal ganglion cells, 531 Retinoic acid, 647 Review, 397 mRNA translation, 21 Root development, 385 S phase checkpoint, 355 S6K1, 29 Satellite cell, 575, 612 SCF complex, 323 Self-renewal, 575 Semaphorin, 704 Sensory organ precursor, 423 Serpent, 107 Signal transduction, 596 Signaling pathways, 673 Skeletal muscle, 575 Skeletal myoblasts, 623 Skeletal myogenesis, 623 Slug, 642 Sox, 694 SoxE, 642 Spermatogenesis, 245, 547 Spindle-assembly checkpoint, 335 Steroid hormones, 237 Sterols, 175 Stress, 3 Subcellular distribution, 514
Substrate, 311 Sympathetic nervous system, 554 Targeting, 163 Thyroid hormone, 271 TNF, 59 mTOR, 21, 29 Transactivation, 514 Transcription factors, 83, 655 Transcription, 117, 596 Transdifferentiation, 632 Transforming growth factor, 704 Transgenic reporter fish, 95 translation, 39 Translation, 49, 59, 487 Transport, 155 TSC, 29 Ubiquitin, 323 U-shaped, 107 5 Untranslated region, 39 3 UTR, 49 VEGF, Chondrocytes, 539 VHL, 462, 523, 539 Viral infection, 13 Virus, 3 Vlad tepes, 95 von Hippel–Lindau (VHL) tumor suppressor, 564 Wnt, 642, 647 Xenopus, 663 Yeast, 155 Zebrafish, 663