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Geochemistry Articles - September 2007
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Organic Geochemistry Organic Geochemistry 39 (2008) e1–e21 www.elsevier.com/locate/orggeochem
GEOCHEMISTRY ARTICLES – September 2007 Analytical Chemistry Non-proximate detection of small and large molecules by desorption electrospray ionization and desorption atmospheric pressure chemical ionization mass spectrometry: Instrumentation and applications in forensics, chemistry, and biology Cotte-Rodriguez, I., Mulligan, C.C., Cooks, R.G., 2007. Analytical Chemistry 79, 7069–7077. Remote mass spectrometric sampling of electrospray and desorption electrospray-generated ions using an air ejector Dixon, R.B., Bereman, M.S., Muddiman, D.C., Hawkridge, A.M., 2007. Journal of the American Society for Mass Spectrometry 18, 1844–1847. Structural analysis of monoterpene glycosides extracted from Paeonia lactiflora Pall. using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry and high-performance liquid chromatography/electrospray ionization tandem mass spectrometry Dong, H., Liu, Z., Song, F., Yu, Z., Li, H., Liu, S., 2007. Rapid Communications in Mass Spectrometry 21, 3193–3199. Classification of weathered petroleum oils by multi-way analysis of gas chromatography–mass spectrometry data using PARAFAC2 parallel factor analysis Ebrahimi, D., Li, J., Hibbert, D.B., 2007. Journal of Chromatography A 1166, 163–170. Molecular features of organic matter in diagnostic horizons from andosols as seen by analytical pyrolysis Gonza´lez-Pe´rez, J.A., Arbelo, C.D., Gonza´lez-Vila, F.J., Rodrı´guez, A.R., Almendros, G., Armas, C.M., Polvillo, O., 2007. Journal of Analytical and Applied Pyrolysis 80, 369–382. Positive matrix factorization (PMF) analysis of molecular marker measurements to quantify the sources of organic aerosols Jaeckels, J.M., Bae, M.-S., Schauer, J.J., 2007. Environmental Science & Technology 41, 5763– 5769. Multidimensional gas chromatographic determination of naphthenes, paraffins, olefins, and aromatics in reformed gasolines Lo Coco, F., Gasparini, G., Lanuzza, F., 2007. Journal of Separation Science 30, 2305–2310. A practical guide to nano-LC troubleshooting Noga, M., Sucharski, F., Suder, P., Silberring, J., 2007. Journal of Separation Science 30, 2179–2189. doi: 10.1016/j.orggeochem.2007.12.006
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Atmospheric pressure photoionization proton transfer for complex organic mixtures investigated by Fourier transform ion cyclotron resonance mass spectrometry Purcell, J.M., Hendrickson, C.L., Rodgers, R.P., Marshall, A.G., 2007. Journal of the American Society for Mass Spectrometry 18, 1682–1689. Sulfur speciation in petroleum: Atmospheric pressure photoionization or chemical derivatization and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry Purcell, J.M., Juyal, P., Kim, D.-G., Rodgers, R.P., Hendrickson, C.L., Marshall, A.G., 2007. Energy & Fuels 25, 2869–2874. Algorithm for processing raw mass spectrometric data to identify and quantitate complex lipid molecular species in mixtures by data-dependent scanning and fragment ion database searching Song, H., Hsu, F.-F., Ladenson, J., Turk, J., 2007. Journal of the American Society for Mass Spectrometry 18, 1848–1858. Comprehensive two-dimensional gas chromatography for the separation of fatty acids in milk Vlaeminck, B., Harynuk, J., Fievez, V., Marriott, P., 2007. European Journal of Lipid Science and Technology 109, 757–766. Trace analysis of impurities in bulk gases by gas chromatography-pulsed discharge helium ionization detection with "heart-cutting" technique Weijun, Y., 2007. Journal of Chromatography A 1167, 225–230. Analysis of polynuclear aromatic hydrocarbons in heavy products derived from coal and petroleum by high performance liquid chromatography Zhang, C., Zhang, X., Yang, J., Liu, Z., 2007. Journal of Chromatography A 1167, 171–177. Trilinear decomposition method applied to removal of three-dimensional background drift in comprehensive twodimensional separation data Zhang, Y., Wu, H.-L., Xia, A.L., Hu, L.-H., Zou, H.-F., Yu, R.-Q., 2007. Journal of Chromatography A 1167, 178–183.
Archaeological/Art Organic Chemistry Patterns of damage in genomic DNA sequences from a Neandertal Briggs, A.W., Stenzel, U., Johnson, P.L.F., Green, R.E., Kelso, J., Pru¨fer, K., Meyer, M., Krause, J., Ronan, M.T., Lachmann, M., Pa¨a¨bo, S., 2007. Proceedings of the National Academy of Sciences USA 104, 14616– 14621. Fingernails and diet: Stable isotope signatures of a marine hunting community from modern Uummannaq, North Greenland Buchardt, B., Bunch, V., Helin, P., 2007. Chemical Geology 244, 316–329. Advantages of using microbial technology over traditional chemical technology in removal of black crusts from stone surfaces of historical monuments Cappitelli, F., Toniolo, L., Sansonetti, A., Gulotta, D., Ranalli, G., Zanardini, E., Sorlini, C., 2007. Applied and Environmental Microbiology 73, 5671–5675. Application of analytical pyrolysis for the characterisation of old inks Chiavari, G., Montalbani, S., Prati, S., Keheyan, Y., Baroni, S., 2007. Journal of Analytical and Applied Pyrolysis 80, 400–405.
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Fourier transform infrared spectroscopy as a suitable technique in the study of the materials used in waterproofing of archaeological amphorae Font, J., Salvado, N., Buti, S., Enrich, J., 2007. Analytica Chimica Acta 598, 119–127. Quids and aprons: Ancient DNA from artifacts from the American Southwest LeBlanc, S.A., Kreisman, L.S.C., Kemp, B.M., Smiley, F.E., Dhody, A.N., Benjamin, T., 2007. Journal of Field Archaeology 32, 161–175. Compound-specific stable carbon isotopic detection of pig product processing in British Late Neolithic pottery Mukherjee, A.J., Berstan, R., Copley, M.S., Gibson, A.M., 2007. Antiquity 81, 743.
Astrobiology Subcritical water extraction of amino acids from Atacama Desert soils Amashukeli, X., Pelletier, C.C., Kirby, J.P., Grunthaner, F.J., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S16. A concept for NASA’s Mars 2016 Astrobiology Field Laboratory Beegle, L.W., Wilson, M.G., Abilleira, F., Jordan, J.F., Wilson, G.R., 2007. Astrobiology 7, 545–577. Life in the Atacama: Searching for life with rovers (science overview) Cabrol, N.A., Wettergreen, D., Warren-Rhodes, K., Grin, E.A., Moersch, J., Diaz, G.C., Cockell, C.S., Coppin, P., Demergasso, C., Dohm, J.M., Ernst, L., Fisher, G., Glasgow, J., Hardgrove, C., Hock, A.N., Jonak, D., Marinangeli, L., Minkley, E., Ori, G.G., Piatek, J., Pudenz, E., Smith, T., Stubbs, K., Thomas, G., Thompson, D., Waggoner, A., Wagner, M., Weinstein, S., Wyatt, M., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S02. Relative humidity patterns and fog water precipitation in the Atacama Desert and biological implications Ca´ceres, L., Go´mez-Silva, B., Garro´, X., Rodrı´guez, V., Monardes, V., McKay, C.P., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S14. Why the probability of finding highly-organized life (as it exists on Earth) on another planet in our galaxy is very low Chilingar, G.V., 2007. Energy Sources, Part A: Recovery, Utilization, and Environmental Effects 29, 1259– 1260. Origin of informational polymers and the search for non-Terran life: Protection of the polymeric state of DNA by phosphate minerals Ciciriello, F., Costanzo, G., Crestini, C., Saladino, R., Di Mauro, E., 2007. Astrobiology 7, 616– 630. Superoxide radical assays and applications in Mars-like Atacama soils Georgiou, C.D., Papapostolou, I., Sun, H., McKay, C.P., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S13. Extreme environment analogue studies Part I Grasby, S., Morris-Smith, P., 2007. Astrobiology 7, 644. Biogeochemistry of hypersaline springs supporting a mid-continent marine ecosystem: An analogue for Martian springs? Grasby, S.E., Londry, K.L., 2007. Astrobiology 7, 662–683.
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Geomarkers versus biomarkers: Paleoenvironmental and astrobiological significance Martinez Frias, J., La´zaro, E., Esteve-Nu´n˜ez, A., 2007. Ambio 36, 425–426. Searching for life on Mars: Selection of molecular targets for ESA’s Aurora ExoMars mission Parnell, J., Cullen, D., Sims, M.R., Bowden, S., Cockell, C.S., Court, R., Ehrenfreund, P., Gaubert, F., Grant, W., Parro, V., Rohmer, M., Sephton, M., Stan-Lotter, H., Steele, A., Toporski, J., Vago, J., 2007. Astrobiology 7, 578–604. Organic amine biomarker detection in the Yungay region of the Atacama Desert with the Urey instrument Skelley, A.M., Aubrey, A.D., Willis, P.A., Amashukeli, X., Ehrenfreund, P., Bada, J.L., Grunthaner, F.J., Mathies, R.A., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S11. Porphyrin as an ideal biomarker in the search for extraterrestrial life Suo, Z., Avci, R., Schweitzer, M.H., Deliorman, M., 2007. Astrobiology 7, 605–615. Comparing different methods for assessing ground truth of rover data analysis for the 2005 season of the life in the Atacama Project Thomas, G.W., Ukstins Peate, I., Nakamoto, J., Pudenz, E., Glasgow, J., Bretthauer, J., Cabrol, N., Wettergreen, D., Grin, E., Coppin, P., Dohm, J.M., Piatek, J.L., Warren-Rhodes, K., Hock, A.N., Weinstein, S., Fisher, G., Chong Diaz, G., Cockell, C., Marinangeli, L., Minkley, N., Moersch, J., Ori, G.G., Smith, T., Stubb, K., Wagner, M., Waggoner, A.S., 2007. Journal of Geophysical Research Biogeosciences Citation No. G04S09. Searching for microbial life remotely: Satellite-to-rover habitat mapping in the Atacama Desert, Chile Warren-Rhodes, K., Weinstein, S., Dohm, J., Piatek, J., Minkley, E., Hock, A., Cockell, C., Pane, D., Ernst, L.A., Fisher, G., Emani, S., Waggoner, A.S., Cabrol, N.A., Wettergreen, D.S., Apostolopoulos, D., Coppin, P., Grin, E., Diaz, C., Moersch, J., Oril, G.G., Smith, T., Stubbs, K., Thomas, G., Wagner, M., Wyatt, M., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S05. Surface-enhanced Raman signatures of pigmentation of cyanobacteria from within geological samples in a spectroscopic-microfluidic flow cell Wilson, R., Monaghan, P., Bowden, S.A., Parnell, J., Cooper, J.M., 2007. Analytical Chemistry 79, 7036– 7041.
Biochemistry Ultrahigh bioproductivity from algae Gordon, J., Polle, J., 2007. Applied Microbiology and Biotechnology 76, 969–975. Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes Hotopp, J.C.D., Clark, M.E., Oliveira, D.C.S.G., Foster, J.M., Fischer, P., Torres, M.C.M., Giebel, J.D., Kumar, N., Ishmael, N., Wang, S., Ingram, J., Nene, R.V., Shepard, J., Tomkins, J., Richards, S., Spiro, D.J., Ghedin, E., Slatko, B.E., Tettelin, H., Werren, J.H., 2007. Science 317, 1753–1756. Extracellular polymeric substances (EPS) from cyanobacterial mats: Characterisation and isolation method optimisation Klock, J.-H., Wieland, A., Seifert, R., Michaelis, W., 2007. Marine Biology 152, 1077–1085. Origins of flagellar gene operons and secondary flagellar systems Liu, R., Ochman, H., 2007. Journal of Bacteriology 189, 7098–7104.
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Carotenoid analysis of halophilic archaea by resonance Raman spectroscopy Marshall, C.P., Leuko, S., Coyle, C.M., Walter, M.R., Burns, B.P., Neilan, B.A., 2007. Astrobiology 7, 631–643. Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph Rashby, S.E., Sessions, A.L., Summons, R.E., Newman, D.K., 2007. Proceedings of the National Academy of Sciences USA 104, 15099–15104. Biogenetic diversity of cyanobacterial metabolites Van Wagoner, R.M., Drummond, A.K., Wright, J.L.C., 2007. Advances in Applied Microbiology 61, 89–217. Structure and function of archaeal RNA polymerases Werner, F., 2007. Molecular Microbiology 65, 1395–1404.
Biodegradation Anaerobic phenanthrene mineralization by a carboxylating sulfate-reducing bacterial enrichment Davidova, I.A., Gieg, L.M., Duncan, K.E., Suflita, J.M., 2007. ISME J 1, 436–442. Anaerobic biodegradation of methyl tert-butyl ether (MTBE) and related fuel oxygenates Ha¨ggblom, M.M., Youngster, L.K.G., Somsamak, P., Richnow, H.H., 2007. Advances in Applied Microbiology 62, 1–20. Degradative capacities and bioaugmentation potential of an anaerobic benzene-degrading bacterium Strain DN11 Kasai, Y., Kodama, Y., Takahata, Y., Hoaki, T., Watanabe, K., 2007. Environmental Science & Technology 41, 6222–6227. Persistence and biodegradation of kerosene in high-arctic intertidal sediment Roberg, S., Stormo, S.K., Landfald, B., 2007. Marine Environmental Research 64, 417–428. Bacterial metabolism of long-chain n-alkanes Wentzel, A., Ellingsen, T., Kotlar, H.-K., Zotchev, S., Throne-Holst, M., 2007. Applied Microbiology and Biotechnology 76, 1209–1221. Biodeterioration of crude oil and oil derived products: A review Yemashova, N., Murygina, V., Zhukov, D., Zakharyantz, A., Gladchenko, M., Appanna, V., Kalyuzhnyi, S., 2007. Reviews in Environmental Science and Biotechnology 6, 315–337. Biogeochemistry Oxidation of hydrogen sulphide in sour gas by Chlorobium limicola Ball, A.S., Nedwell, D.B., Perkins, R.G., 2007. Enzyme and Microbial Technology 41, 702–705. Controlled biomineralization by and applications of magnetotactic bacteria Bazylinski, D.A., Schubbe, S., 2007. Advances in Applied Microbiology 62, 21–62. Biogenic mineral production by a novel arsenic-metabolizing thermophilic bacterium from the Alvord Basin, Oregon Ledbetter, R.N., Connon, S.A., Neal, A.L., Dohnalkova, A., Magnuson, T.S., 2007. Applied and Environmental Microbiology 73, 5928–5936.
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Dolomite formation in the dynamic deep biosphere: Results from the Peru Margin Meister, P., McKenzie, J.A., Vasconcelos, C., Bernasconi, S., Frank, M., Gutjahr, M., Schrag, D.P., 2007. Sedimentology 54, 1007–1032. Changes in microbial community composition and geochemistry during uranium and technetium bioimmobilization Michalsen, M.M., Peacock, A.D., Spain, A.M., Smithgal, A.N., White, D.C., Sanchez-Rosario, Y., Krumholz, L.R., Istok, J.D., 2007. Applied and Environmental Microbiology 73, 5885–5896. Microbial nanowires: Is the subsurface hardwired? Ntarlagiannis, D., Atekwana, A.E., Hill, E.A., Gorby, Y., 2007. Geophysical Research Letters 34, Citation No. L17305. Defining biominerals and organominerals: Direct and indirect indicators of life Perry, R.S., McLoughlin, N., Lynne, B.Y., Sephton, M.A., Oliver, J.D., Perry, C.C., Campbell, K., Engel, M.H., Farmer, J.D., Brasier, M.D., Staley, J.T., 2007. Sedimentary Geology 201, 157–179. New ways to break an old bond: The bacterial carbon–phosphorus hydrolases and their role in biogeochemical phosphorus cycling Quinn, J.P., Kulakova, A.N., Cooley, N.A., McGrath, J.W., 2007. Environmental Microbiology 9, 2392–2400. Control of ferrous iron oxidation within circumneutral microbial iron mats by cellular activity and autocatalysis Rentz, J.A., Kraiya, C., Luther III, G.W., Emerson, D., 2007. Environmental Science & Technology 41, 6084– 6089. A rare earth element signature of bacteria in natural waters? Takahashi, Y., Hirata, T., Shimizu, H., Ozaki, T., Fortin, D., 2007. Chemical Geology 244, 569–583. A stable isotope study of microbial dolomite formation in the Coorong Region, South Australia Wacey, D., Wright, D.T., Boyce, A.J., 2007. Chemical Geology 244, 155–176. Oxygen isotope biogeochemistry of pore water sulfate in the deep biosphere: Dominance of isotope exchange reactions with ambient water during microbial sulfate reduction (ODP Site 1130) Wortmann, U.G., Chernyavsky, B., Bernasconi, S.M., Brunner, B., Bottcher, M.E., Swart, P.K., 2007. Geochimica et Cosmochimica Acta 71, 4221–4232.
Carbon Cycle/Sequestration CO2 answers are elusive as CO2 Brown, D., 2007. AAPG Explorer 28, 14, 16, 18. Significance of pelagic aerobic methane oxidation in the methane and carbon budget of a tropical reservoir Gue´rin, F.A., Gwenae¨l, 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G03006. Predictive modelling of C dynamics in the long-term fertilization experiment at Bad Lauchsta¨dt with the Rothamsted carbon model Ludwig, B., Schulz, E., Rethemeyer, J., Merbach, I., Flessa, H., 2007. European Journal of Soil Science 58, 1155–1163. Temperature and soil moisture effects on dissolved organic matter release from a moorland Podzol O horizon under field and controlled laboratory conditions Stutter, M.I., Lumsdon, D.G., Cooper, R.J., 2007. European Journal of Soil Science 58, 1007–1016.
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Coal/Peat/Lignite Geochemistry Investigation on the release characteristics of light hydrocarbon during pulverized coal pyrolysis Fan, J., Zhang, Z., Jin, J., Zhang, J., 2007. Energy & Fuels 21, 2805–2808. Trace element chemistry of coal bed natural gas produced water in the Powder River Basin, Wyoming Jackson, R.E., Reddy, K.J., 2007. Environmental Science & Technology 41, 5953–5959. Origin and properties of Oltu gemstone coal Karayigit, A.I., 2007. Energy Sources, Part A: Recovery, Utilization, and Environmental Effects 29, 1279–1284. Cosmochemistry The origin and evolution of chondrites recorded in the elemental and isotopic compositions of their macromolecular organic matter Alexander, C.M.O.D., Fogel, M., Yabuta, H., Cody, G.D., 2007. Geochimica et Cosmochimica Acta 71, 4380–4403. On the fate of carbonates and anhydrite in impact processes – evidence from the Chicxulub event Deutsch, A., Langenhorst, F., 2007. GFF 129, 155–160.
Environmental Geochemistry Sorption of PAHs to colloid dispersions of humic substances in water Arias-Este´vez, M., Ferna´ndez-Ga´ndara, D., Garcı´a-Falco´n, M., Garcı´a-Rı´o, L., Mejuto, J., Simal-Ga´ndara, J., 2007. Bulletin of Environmental Contamination and Toxicology 79, 251–254. Beach tar accumulation, transport mechanisms, and sources of variability at Coal Oil Point, California Del Sontro, T.S., Leifer, I., Luyendyk, B.P., Broitman, B.R., 2007. Marine Pollution Bulletin 54, 1461– 1471. High-resolution records of polycyclic aromatic hydrocarbons in the sediments of Lake Liangzi in central China during the last 100 yr Donyinah, S.K., Qi, S., Fei, Q., 2007. Environmental Geosciences 14, 149–157. The sedimentary fluxes of polycyclic aromatic hydrocarbons in the Yangtze River Estuary coastal sea for the past century Guo, Z., Lin, T., Zhang, G., Zheng, M., Zhang, Z., Hao, Y., Fang, M., 2007. Science of the Total Environment 386, 33–41. Predicting bioavailability of sediment polycyclic aromatic hydrocarbons to Hyalella azteca using equilibrium partitioning, supercritical fluid extraction, and pore water concentrations Hawthorne, S.B., Azzolina, N.A., Neuhauser, E.F., Kreitinger, J.P., 2007. Environmental Science & Technology 41, 6297–6304. In situ bioremediation Jørgensen, K.S., 2007. Advances in Applied Microbiology 61, 285–305. Enhanced diffusion of polycyclic aromatic hydrocarbons in artificial and natural aqueous solutions Mayer, P., Fernqvist, M.M., Christensen, P.S., Karlson, U., Trapp, S., 2007. Environmental Science & Technology 41, 6148–6155.
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An assessment of the biodegradation of petroleum hydrocarbons in contaminated soil using non-indigenous, commercial microbes Mohammed, D., Ramsubhag, A., Beckles, D., 2007. Water, Air, & Soil Pollution 182, 349–356. Seasonal variation of particulate lipophilic organic compounds at nonurban sites in Europe Oliveira, T.S., Pio, C.A., Alves, C.A., Silvestre, A.J.D., Evtyugina, M., Afonso, J.V., Fialho, P., Legrand, M., Puxbaum, H., Gelencse´r, A., 2007. Journal of Geophysical Research Atmospheres 112, Citation No. D23S09. Environmental monitoring of hydrocarbons: A chemical sensor perspective Pejcic, B., Eadington, P., Ross, A., 2007. Environmental Science & Technology 41, 6333–6342. Methodical approach for the use of GC-TOF MS for screening and confirmation of organic pollutants in environmental water Portole´s, T., Pitarch, E., Lo´pez, F.J., Sancho, J.V., Herna´ndez, F., 2007. Journal of Mass Spectrometry 42, 1175–1185. Geochemical heterogeneity and isotope geochemistry of natural attenuation processes in a gasoline-contaminated aquifer at the Hnevice site, Czech Republic Topinkova, B., Nesetril, K., Datel, J., Nol, O., Hosl, P., 2007. Hydrogeology Journal 15, 961–976.
Evolution/Paleontology/Palynology Strong coupling of predation intensity and diversity in the Phanerozoic fossil record Huntley, J.W., Kowalewski, M., 2007. Proceedings of the National Academy of Sciences USA 104, 15006– 15010. Radiation of Meso-Neoproterozoic and Early Cambrian protists inferred from the microfossil record of China Leiming, Y., Xunlai, Y., 2007. Palaeogeography, Palaeoclimatology, Palaeoecology 254, 350–361. Early Cambrian metazoan fossil record of South China: Generic diversity and radiation patterns Li, G., Steiner, M., Zhu, X., Yang, A., Wang, H., Erdtmann, B.D., 2007. Palaeogeography, Palaeoclimatology, Palaeoecology 254, 229–249. Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylum Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G.F., Chater, K.F., van Sinderen, D., 2007. Microbiology and Molecular Biology Reviews 71, 495–548. Eramosa Lagersta¨tte – Exceptionally preserved soft-bodied biotas with shallow-marine shelly and bioturbating organisms (Silurian, Ontario, Canada) von Bitter, P.H., Purnell, M.A., Tetreault, D.K., Stott, C.A., 2007. Geology 35, 879–882. Precambrian–Cambrian trace fossils from the Yangtze Platform (South China) and the early evolution of bilaterian lifestyles Weber, B., Steiner, M., Zhu, M.Y., 2007. Palaeogeography, Palaeoclimatology, Palaeoecology 254, 328–349. Exceptionally preserved Late Ordovician biotas from Manitoba, Canada Young, G.A., Rudkin, D.M., Dobrzanski, E.P., Robson, S.P., Nowlan, G.S., 2007. Geology 35, 883–886.
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Evolution: Origins of Life/Microbial Genomics Getting specificity from simplicity in putative proteins from the prebiotic Earth Lo´pez de la Osa, J., Bateman, D.A., Ho, S., Gonza´lez, C., Chakrabartty, A., Laurents, D.V., 2007. Proceedings of the National Academy of Sciences USA 104, 14941–14946.
Fluid Inclusions Fluid-inclusion evidence of petroleum migration through a buried metamorphic dome in the Pannonian Basin, Hungary Schubert, F., Diamond, L.W., To´th, T.M., 2007. Chemical Geology 244, 357–381.
Hydrates Appearance and preservation of natural gas hydrate from Hydrate Ridge sampled during ODP Leg 204 drilling Bohrmann, G., Kuhs, W.F., Klapp, S.A., Techmer, K.S., Klein, H., Murshed, M.M., Abegg, F., 2007. Marine Geology 244, 1–14. Fractionation of crude oil acids by HPLC and characterization of their properties and effects on gas hydrate surfaces Borgund, A.E., Erstad, K., Barth, T., 2007. Energy & Fuels 25, 2816–2826. A comparative Raman spectroscopic study of natural gas hydrates collected at different geological sites Chazallon, B., Focsa, C., Charlou, J.-L., Bourry, C., Donval, J.-P., 2007. Chemical Geology 244, 175–185. Gas hydrate, fluid flow and free gas: Formation of the bottom-simulating reflector Haacke, R.R., Westbrook, G.K., Hyndman, R.D., 2007. Earth and Planetary Science Letters 261, 407–420. An accurate model to predict the thermodynamic stability of methane hydrate and methane solubility in marine environments Sun, R., Duan, Z., 2007. Chemical Geology 244, 248–262.
Isotope Geochemistry Dietary niche partitioning among fossil bovids in late Miocene C3 habitats: Consilience of functional morphology and stable isotope analysis Bibi, F., 2007. Palaeogeography, Palaeoclimatology, Palaeoecology 253, 529–538. Sea-level forcing of carbon isotope excursions in epeiric seas: Implications for chemostratigraphy Fanton, K.C., Holmden, C., 2007. Canadian Journal of Earth Sciences 44, 807–818. Stable isotope fractionation during bacterial sulfate reduction is controlled by reoxidation of intermediates Mangalo, M., Meckenstock, R.U., Stichler, W., Einsiedl, F., 2007. Geochimica et Cosmochimica Acta 71, 4161–4171. A gas-chromatograph, continuous flow-isotope ratio mass-spectrometry method for d13C and dD measurement of complex fluid inclusion volatiles: Examples from the Khibina alkaline igneous complex, northwest Russia and the South Wales coalfields Potter, J., Longstaffe, F.J., 2007. Chemical Geology 244, 186–201.
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Cadmium isotope fractionation in seawater – A signature of biological activity Ripperger, S., Rehkamper, M., Porcelli, D., Halliday, A.N., 2007. Earth and Planetary Science Letters 261, 670–684. Carbon isotope effects in the open-system Fischer–Tropsch synthesis Taran, Y.A., Kliger, G.A., Sevastianov, V.S., 2007. Geochimica et Cosmochimica Acta 71, 4474–4487. ˚ molecular sieves to measure carbon isotope ratios in lipid biomarkers Utility of 5 A Tolosa, I., Ogrinc, N., 2007. Journal of Chromatography A 1165, 172–181. Stable carbon isotope ratios of methyl-branched fatty acids are different to those of straight-chain fatty acids in dairy products Vetter, W., Gaul, S., Thurnhofer, S., Mayer, K., 2007. Analytical and Bioanalytical Chemistry 389, 597– 604. Foliar d15N patterns along successional gradients at plant community and species levels Wang, L., Shaner, P.-J.L., Macko, S., 2007. Geophysical Research Letters 34, Citation No. L16403.
Microbiology/Extremophiles – Microbial Ecology Microbial structuring of marine ecosystems Azam, F., Malfatti, F., 2007. Nature Reviews Microbiology 5, 782–791. Bacterial diversity in hyperarid Atacama Desert soils Connon, S.A., Lester, E.D., Shafaat, H.S., Obenhuber, D.C., Ponce, A., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S17. Mix and match: How climate selects phytoplankton Falkowski, P.G., Oliver, M.J., 2007. Nature Reviews Microbiology 5, 813–819. The importance of culturing bacterioplankton in the ‘omics’ age Giovannoni, S., Stingl, U., 2007. Nature Reviews Microbiology 5, 820–826. Understanding microbially active biogeochemical environments Gleeson, D., McDermott, F., Clipson, N., 2007. Advances in Applied Microbiology 62, 81–104. Ancient bacteria show evidence of DNA repair Johnson, S.S., Hebsgaard, M.B., Christensen, T.R., Mastepanov, M., Nielsen, R., Munch, K., Brand, T., Gilbert, M.T.P., Zuber, M.T., Bunce, M., Ronn, R., Gilichinsky, D., Froese, D., Willerslev, E., 2007. Proceedings of the National Academy of Sciences USA 104, 14401–14405. Feast and famine – Microbial life in the deep-sea bed Jørgensen, B.B., Boetius, A., 2007. Nature Reviews Microbiology 5, 770–781. Microbial oceanography: Paradigms, processes and promise Karl, D.M., 2007. Nature Reviews Microbiology 5, 759–769. Microbial community structure in major habitats above 6000 m on Mount Everest Liu, Y., Yao, T., Kang, S., Jiao, N., Zeng, Y., Huang, S., Luo, T., 2007. Chinese Science Bulletin 52, 2350– 2357.
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Carbon in tundra soils in the Lake Labaz region of Arctic Siberia Gundelwein, A., Muller-Lupp, T., Sommerkorn, M., Haupt, E.T.K., Pfeiffer, E.M., Wiechmann, H., 2007. European Journal of Soil Science 58, 1164–1174. Comparison of quantification methods to measure fire-derived (black/elemental) carbon in soils and sediments using reference materials from soil, water, sediment and the atmosphere Hammes, K., Schmidt, M.W.I., Smernik, R.J., Currie, L.A., Ball, W.P., Nguyen, T.H., Louchouarn, P., ¨ ., Elmquist, M., Cornelissen, G., Skjemstad, J.O., Masiello, C.A., Song, J., Peng, Houel, S., Gustafsson, O P.a., Mitra, S., Dunn, J.C., Hatcher, P.G., Hockaday, W.C., Smith, D.M., Hartkopf-Fro¨der, C., Bo¨hmer, A., Lu¨er, B., Huebert, B.J., Amelung, W., Brodowski, S., Huang, L., Zhang, W., Gschwend, P.M., Flores-Cervantes, D.X., Largeau, C., Rouzaud, J.-N., Rumpel, C., Guggenberger, G., Kaiser, K., Rodionov, A., Gonzalez-Vila, F.J., Gonzalez-Perez, J.A., de la Rosa, J.M., Manning, D.A.C., Lo´pez-Cape´l, E., Ding, L., 2007. Global Biogeochemical Cycles 21, Citation No. GB3016. Fractionation of lignin during leaching and sorption and implications for organic matter "freshness" Hernes, P.J., Robinson, A.C., Aufdenkampe, A.K., 2007. Geophysical Research Letters 34, Citation No. L17401. Analysis of polynuclear aromatic and aliphatic components in soil humic acids using ruthenium tetroxide oxidation Ikeya, K., Ishida, Y., Ohtani, H., Yamamoto, S., Watanabe, A., 2007. European Journal of Soil Science 58, 1050–1061. Topographic influences on wildfire consumption of soil organic carbon in interior Alaska: Implications for black carbon accumulation Kane, E.S., E.S. Kasischke, D.W. Valentine, M.R. Turetsky, McGuire, A.D., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G03017. Effects of molecular weight of natural organic matter on cadmium mobility in soil environments and its carbon isotope characteristics Mahara, Y., Kubota, T., Wakayama, R., Nakano-Ohta, T., Nakamura, T., 2007. Science of The Total Environment 387, 220–227. Determination of the fate of 13C labelled maize and wheat exudates in an agricultural soil during a short-term incubation Marx, M., Buegger, F., Gattinger, A., Zsolnay, A., Munch, J.C., 2007. European Journal of Soil Science 58, 1175–1185. MIOR: An individual-based model for simulating the spatial patterns of soil organic matter microbial decomposition Masse, D., Cambier, C., Brauman, A., Sall, S., Assigbetse, K., Chotte, J.L., 2007. European Journal of Soil Science 58, 1127–1135. Soil carbon saturation: Concept, evidence and evaluation Stewart, C., Paustian, K., Conant, R., Plante, A., Six, J., 2007. Biogeochemistry 86, 19–31. Assessment of degradation and generation of humus in a coffee soil affected by weed cover by means of a stable carbon isotopic ratio Watanabe, A., Takada, H., Sarno, Afandi, Adachi, T., Oki, Y., Senge, M., 2007. European Journal of Soil Science 58, 1042–1049.
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Expanded compilations of references with abstracts in Microsoft Word and ISI EndNote formats are available at: http://www.eaog.org/other/ref_update.html. Compiled by Clifford C. Walters Available online 31 January 2008
Organic Geochemistry Organic Geochemistry 39 (2008) e1–e21 www.elsevier.com/locate/orggeochem
GEOCHEMISTRY ARTICLES – September 2007 Analytical Chemistry Non-proximate detection of small and large molecules by desorption electrospray ionization and desorption atmospheric pressure chemical ionization mass spectrometry: Instrumentation and applications in forensics, chemistry, and biology Cotte-Rodriguez, I., Mulligan, C.C., Cooks, R.G., 2007. Analytical Chemistry 79, 7069–7077. Remote mass spectrometric sampling of electrospray and desorption electrospray-generated ions using an air ejector Dixon, R.B., Bereman, M.S., Muddiman, D.C., Hawkridge, A.M., 2007. Journal of the American Society for Mass Spectrometry 18, 1844–1847. Structural analysis of monoterpene glycosides extracted from Paeonia lactiflora Pall. using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry and high-performance liquid chromatography/electrospray ionization tandem mass spectrometry Dong, H., Liu, Z., Song, F., Yu, Z., Li, H., Liu, S., 2007. Rapid Communications in Mass Spectrometry 21, 3193–3199. Classification of weathered petroleum oils by multi-way analysis of gas chromatography–mass spectrometry data using PARAFAC2 parallel factor analysis Ebrahimi, D., Li, J., Hibbert, D.B., 2007. Journal of Chromatography A 1166, 163–170. Molecular features of organic matter in diagnostic horizons from andosols as seen by analytical pyrolysis Gonza´lez-Pe´rez, J.A., Arbelo, C.D., Gonza´lez-Vila, F.J., Rodrı´guez, A.R., Almendros, G., Armas, C.M., Polvillo, O., 2007. Journal of Analytical and Applied Pyrolysis 80, 369–382. Positive matrix factorization (PMF) analysis of molecular marker measurements to quantify the sources of organic aerosols Jaeckels, J.M., Bae, M.-S., Schauer, J.J., 2007. Environmental Science & Technology 41, 5763– 5769. Multidimensional gas chromatographic determination of naphthenes, paraffins, olefins, and aromatics in reformed gasolines Lo Coco, F., Gasparini, G., Lanuzza, F., 2007. Journal of Separation Science 30, 2305–2310. A practical guide to nano-LC troubleshooting Noga, M., Sucharski, F., Suder, P., Silberring, J., 2007. Journal of Separation Science 30, 2179–2189. doi: 10.1016/j.orggeochem.2007.12.006
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Atmospheric pressure photoionization proton transfer for complex organic mixtures investigated by Fourier transform ion cyclotron resonance mass spectrometry Purcell, J.M., Hendrickson, C.L., Rodgers, R.P., Marshall, A.G., 2007. Journal of the American Society for Mass Spectrometry 18, 1682–1689. Sulfur speciation in petroleum: Atmospheric pressure photoionization or chemical derivatization and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry Purcell, J.M., Juyal, P., Kim, D.-G., Rodgers, R.P., Hendrickson, C.L., Marshall, A.G., 2007. Energy & Fuels 25, 2869–2874. Algorithm for processing raw mass spectrometric data to identify and quantitate complex lipid molecular species in mixtures by data-dependent scanning and fragment ion database searching Song, H., Hsu, F.-F., Ladenson, J., Turk, J., 2007. Journal of the American Society for Mass Spectrometry 18, 1848–1858. Comprehensive two-dimensional gas chromatography for the separation of fatty acids in milk Vlaeminck, B., Harynuk, J., Fievez, V., Marriott, P., 2007. European Journal of Lipid Science and Technology 109, 757–766. Trace analysis of impurities in bulk gases by gas chromatography-pulsed discharge helium ionization detection with "heart-cutting" technique Weijun, Y., 2007. Journal of Chromatography A 1167, 225–230. Analysis of polynuclear aromatic hydrocarbons in heavy products derived from coal and petroleum by high performance liquid chromatography Zhang, C., Zhang, X., Yang, J., Liu, Z., 2007. Journal of Chromatography A 1167, 171–177. Trilinear decomposition method applied to removal of three-dimensional background drift in comprehensive twodimensional separation data Zhang, Y., Wu, H.-L., Xia, A.L., Hu, L.-H., Zou, H.-F., Yu, R.-Q., 2007. Journal of Chromatography A 1167, 178–183.
Archaeological/Art Organic Chemistry Patterns of damage in genomic DNA sequences from a Neandertal Briggs, A.W., Stenzel, U., Johnson, P.L.F., Green, R.E., Kelso, J., Pru¨fer, K., Meyer, M., Krause, J., Ronan, M.T., Lachmann, M., Pa¨a¨bo, S., 2007. Proceedings of the National Academy of Sciences USA 104, 14616– 14621. Fingernails and diet: Stable isotope signatures of a marine hunting community from modern Uummannaq, North Greenland Buchardt, B., Bunch, V., Helin, P., 2007. Chemical Geology 244, 316–329. Advantages of using microbial technology over traditional chemical technology in removal of black crusts from stone surfaces of historical monuments Cappitelli, F., Toniolo, L., Sansonetti, A., Gulotta, D., Ranalli, G., Zanardini, E., Sorlini, C., 2007. Applied and Environmental Microbiology 73, 5671–5675. Application of analytical pyrolysis for the characterisation of old inks Chiavari, G., Montalbani, S., Prati, S., Keheyan, Y., Baroni, S., 2007. Journal of Analytical and Applied Pyrolysis 80, 400–405.
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Fourier transform infrared spectroscopy as a suitable technique in the study of the materials used in waterproofing of archaeological amphorae Font, J., Salvado, N., Buti, S., Enrich, J., 2007. Analytica Chimica Acta 598, 119–127. Quids and aprons: Ancient DNA from artifacts from the American Southwest LeBlanc, S.A., Kreisman, L.S.C., Kemp, B.M., Smiley, F.E., Dhody, A.N., Benjamin, T., 2007. Journal of Field Archaeology 32, 161–175. Compound-specific stable carbon isotopic detection of pig product processing in British Late Neolithic pottery Mukherjee, A.J., Berstan, R., Copley, M.S., Gibson, A.M., 2007. Antiquity 81, 743.
Astrobiology Subcritical water extraction of amino acids from Atacama Desert soils Amashukeli, X., Pelletier, C.C., Kirby, J.P., Grunthaner, F.J., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S16. A concept for NASA’s Mars 2016 Astrobiology Field Laboratory Beegle, L.W., Wilson, M.G., Abilleira, F., Jordan, J.F., Wilson, G.R., 2007. Astrobiology 7, 545–577. Life in the Atacama: Searching for life with rovers (science overview) Cabrol, N.A., Wettergreen, D., Warren-Rhodes, K., Grin, E.A., Moersch, J., Diaz, G.C., Cockell, C.S., Coppin, P., Demergasso, C., Dohm, J.M., Ernst, L., Fisher, G., Glasgow, J., Hardgrove, C., Hock, A.N., Jonak, D., Marinangeli, L., Minkley, E., Ori, G.G., Piatek, J., Pudenz, E., Smith, T., Stubbs, K., Thomas, G., Thompson, D., Waggoner, A., Wagner, M., Weinstein, S., Wyatt, M., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S02. Relative humidity patterns and fog water precipitation in the Atacama Desert and biological implications Ca´ceres, L., Go´mez-Silva, B., Garro´, X., Rodrı´guez, V., Monardes, V., McKay, C.P., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S14. Why the probability of finding highly-organized life (as it exists on Earth) on another planet in our galaxy is very low Chilingar, G.V., 2007. Energy Sources, Part A: Recovery, Utilization, and Environmental Effects 29, 1259– 1260. Origin of informational polymers and the search for non-Terran life: Protection of the polymeric state of DNA by phosphate minerals Ciciriello, F., Costanzo, G., Crestini, C., Saladino, R., Di Mauro, E., 2007. Astrobiology 7, 616– 630. Superoxide radical assays and applications in Mars-like Atacama soils Georgiou, C.D., Papapostolou, I., Sun, H., McKay, C.P., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S13. Extreme environment analogue studies Part I Grasby, S., Morris-Smith, P., 2007. Astrobiology 7, 644. Biogeochemistry of hypersaline springs supporting a mid-continent marine ecosystem: An analogue for Martian springs? Grasby, S.E., Londry, K.L., 2007. Astrobiology 7, 662–683.
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Geomarkers versus biomarkers: Paleoenvironmental and astrobiological significance Martinez Frias, J., La´zaro, E., Esteve-Nu´n˜ez, A., 2007. Ambio 36, 425–426. Searching for life on Mars: Selection of molecular targets for ESA’s Aurora ExoMars mission Parnell, J., Cullen, D., Sims, M.R., Bowden, S., Cockell, C.S., Court, R., Ehrenfreund, P., Gaubert, F., Grant, W., Parro, V., Rohmer, M., Sephton, M., Stan-Lotter, H., Steele, A., Toporski, J., Vago, J., 2007. Astrobiology 7, 578–604. Organic amine biomarker detection in the Yungay region of the Atacama Desert with the Urey instrument Skelley, A.M., Aubrey, A.D., Willis, P.A., Amashukeli, X., Ehrenfreund, P., Bada, J.L., Grunthaner, F.J., Mathies, R.A., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S11. Porphyrin as an ideal biomarker in the search for extraterrestrial life Suo, Z., Avci, R., Schweitzer, M.H., Deliorman, M., 2007. Astrobiology 7, 605–615. Comparing different methods for assessing ground truth of rover data analysis for the 2005 season of the life in the Atacama Project Thomas, G.W., Ukstins Peate, I., Nakamoto, J., Pudenz, E., Glasgow, J., Bretthauer, J., Cabrol, N., Wettergreen, D., Grin, E., Coppin, P., Dohm, J.M., Piatek, J.L., Warren-Rhodes, K., Hock, A.N., Weinstein, S., Fisher, G., Chong Diaz, G., Cockell, C., Marinangeli, L., Minkley, N., Moersch, J., Ori, G.G., Smith, T., Stubb, K., Wagner, M., Waggoner, A.S., 2007. Journal of Geophysical Research Biogeosciences Citation No. G04S09. Searching for microbial life remotely: Satellite-to-rover habitat mapping in the Atacama Desert, Chile Warren-Rhodes, K., Weinstein, S., Dohm, J., Piatek, J., Minkley, E., Hock, A., Cockell, C., Pane, D., Ernst, L.A., Fisher, G., Emani, S., Waggoner, A.S., Cabrol, N.A., Wettergreen, D.S., Apostolopoulos, D., Coppin, P., Grin, E., Diaz, C., Moersch, J., Oril, G.G., Smith, T., Stubbs, K., Thomas, G., Wagner, M., Wyatt, M., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G04S05. Surface-enhanced Raman signatures of pigmentation of cyanobacteria from within geological samples in a spectroscopic-microfluidic flow cell Wilson, R., Monaghan, P., Bowden, S.A., Parnell, J., Cooper, J.M., 2007. Analytical Chemistry 79, 7036– 7041.
Biochemistry Ultrahigh bioproductivity from algae Gordon, J., Polle, J., 2007. Applied Microbiology and Biotechnology 76, 969–975. Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes Hotopp, J.C.D., Clark, M.E., Oliveira, D.C.S.G., Foster, J.M., Fischer, P., Torres, M.C.M., Giebel, J.D., Kumar, N., Ishmael, N., Wang, S., Ingram, J., Nene, R.V., Shepard, J., Tomkins, J., Richards, S., Spiro, D.J., Ghedin, E., Slatko, B.E., Tettelin, H., Werren, J.H., 2007. Science 317, 1753–1756. Extracellular polymeric substances (EPS) from cyanobacterial mats: Characterisation and isolation method optimisation Klock, J.-H., Wieland, A., Seifert, R., Michaelis, W., 2007. Marine Biology 152, 1077–1085. Origins of flagellar gene operons and secondary flagellar systems Liu, R., Ochman, H., 2007. Journal of Bacteriology 189, 7098–7104.
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Carotenoid analysis of halophilic archaea by resonance Raman spectroscopy Marshall, C.P., Leuko, S., Coyle, C.M., Walter, M.R., Burns, B.P., Neilan, B.A., 2007. Astrobiology 7, 631–643. Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph Rashby, S.E., Sessions, A.L., Summons, R.E., Newman, D.K., 2007. Proceedings of the National Academy of Sciences USA 104, 15099–15104. Biogenetic diversity of cyanobacterial metabolites Van Wagoner, R.M., Drummond, A.K., Wright, J.L.C., 2007. Advances in Applied Microbiology 61, 89–217. Structure and function of archaeal RNA polymerases Werner, F., 2007. Molecular Microbiology 65, 1395–1404.
Biodegradation Anaerobic phenanthrene mineralization by a carboxylating sulfate-reducing bacterial enrichment Davidova, I.A., Gieg, L.M., Duncan, K.E., Suflita, J.M., 2007. ISME J 1, 436–442. Anaerobic biodegradation of methyl tert-butyl ether (MTBE) and related fuel oxygenates Ha¨ggblom, M.M., Youngster, L.K.G., Somsamak, P., Richnow, H.H., 2007. Advances in Applied Microbiology 62, 1–20. Degradative capacities and bioaugmentation potential of an anaerobic benzene-degrading bacterium Strain DN11 Kasai, Y., Kodama, Y., Takahata, Y., Hoaki, T., Watanabe, K., 2007. Environmental Science & Technology 41, 6222–6227. Persistence and biodegradation of kerosene in high-arctic intertidal sediment Roberg, S., Stormo, S.K., Landfald, B., 2007. Marine Environmental Research 64, 417–428. Bacterial metabolism of long-chain n-alkanes Wentzel, A., Ellingsen, T., Kotlar, H.-K., Zotchev, S., Throne-Holst, M., 2007. Applied Microbiology and Biotechnology 76, 1209–1221. Biodeterioration of crude oil and oil derived products: A review Yemashova, N., Murygina, V., Zhukov, D., Zakharyantz, A., Gladchenko, M., Appanna, V., Kalyuzhnyi, S., 2007. Reviews in Environmental Science and Biotechnology 6, 315–337. Biogeochemistry Oxidation of hydrogen sulphide in sour gas by Chlorobium limicola Ball, A.S., Nedwell, D.B., Perkins, R.G., 2007. Enzyme and Microbial Technology 41, 702–705. Controlled biomineralization by and applications of magnetotactic bacteria Bazylinski, D.A., Schubbe, S., 2007. Advances in Applied Microbiology 62, 21–62. Biogenic mineral production by a novel arsenic-metabolizing thermophilic bacterium from the Alvord Basin, Oregon Ledbetter, R.N., Connon, S.A., Neal, A.L., Dohnalkova, A., Magnuson, T.S., 2007. Applied and Environmental Microbiology 73, 5928–5936.
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Dolomite formation in the dynamic deep biosphere: Results from the Peru Margin Meister, P., McKenzie, J.A., Vasconcelos, C., Bernasconi, S., Frank, M., Gutjahr, M., Schrag, D.P., 2007. Sedimentology 54, 1007–1032. Changes in microbial community composition and geochemistry during uranium and technetium bioimmobilization Michalsen, M.M., Peacock, A.D., Spain, A.M., Smithgal, A.N., White, D.C., Sanchez-Rosario, Y., Krumholz, L.R., Istok, J.D., 2007. Applied and Environmental Microbiology 73, 5885–5896. Microbial nanowires: Is the subsurface hardwired? Ntarlagiannis, D., Atekwana, A.E., Hill, E.A., Gorby, Y., 2007. Geophysical Research Letters 34, Citation No. L17305. Defining biominerals and organominerals: Direct and indirect indicators of life Perry, R.S., McLoughlin, N., Lynne, B.Y., Sephton, M.A., Oliver, J.D., Perry, C.C., Campbell, K., Engel, M.H., Farmer, J.D., Brasier, M.D., Staley, J.T., 2007. Sedimentary Geology 201, 157–179. New ways to break an old bond: The bacterial carbon–phosphorus hydrolases and their role in biogeochemical phosphorus cycling Quinn, J.P., Kulakova, A.N., Cooley, N.A., McGrath, J.W., 2007. Environmental Microbiology 9, 2392–2400. Control of ferrous iron oxidation within circumneutral microbial iron mats by cellular activity and autocatalysis Rentz, J.A., Kraiya, C., Luther III, G.W., Emerson, D., 2007. Environmental Science & Technology 41, 6084– 6089. A rare earth element signature of bacteria in natural waters? Takahashi, Y., Hirata, T., Shimizu, H., Ozaki, T., Fortin, D., 2007. Chemical Geology 244, 569–583. A stable isotope study of microbial dolomite formation in the Coorong Region, South Australia Wacey, D., Wright, D.T., Boyce, A.J., 2007. Chemical Geology 244, 155–176. Oxygen isotope biogeochemistry of pore water sulfate in the deep biosphere: Dominance of isotope exchange reactions with ambient water during microbial sulfate reduction (ODP Site 1130) Wortmann, U.G., Chernyavsky, B., Bernasconi, S.M., Brunner, B., Bottcher, M.E., Swart, P.K., 2007. Geochimica et Cosmochimica Acta 71, 4221–4232.
Carbon Cycle/Sequestration CO2 answers are elusive as CO2 Brown, D., 2007. AAPG Explorer 28, 14, 16, 18. Significance of pelagic aerobic methane oxidation in the methane and carbon budget of a tropical reservoir Gue´rin, F.A., Gwenae¨l, 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G03006. Predictive modelling of C dynamics in the long-term fertilization experiment at Bad Lauchsta¨dt with the Rothamsted carbon model Ludwig, B., Schulz, E., Rethemeyer, J., Merbach, I., Flessa, H., 2007. European Journal of Soil Science 58, 1155–1163. Temperature and soil moisture effects on dissolved organic matter release from a moorland Podzol O horizon under field and controlled laboratory conditions Stutter, M.I., Lumsdon, D.G., Cooper, R.J., 2007. European Journal of Soil Science 58, 1007–1016.
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Coal/Peat/Lignite Geochemistry Investigation on the release characteristics of light hydrocarbon during pulverized coal pyrolysis Fan, J., Zhang, Z., Jin, J., Zhang, J., 2007. Energy & Fuels 21, 2805–2808. Trace element chemistry of coal bed natural gas produced water in the Powder River Basin, Wyoming Jackson, R.E., Reddy, K.J., 2007. Environmental Science & Technology 41, 5953–5959. Origin and properties of Oltu gemstone coal Karayigit, A.I., 2007. Energy Sources, Part A: Recovery, Utilization, and Environmental Effects 29, 1279–1284. Cosmochemistry The origin and evolution of chondrites recorded in the elemental and isotopic compositions of their macromolecular organic matter Alexander, C.M.O.D., Fogel, M., Yabuta, H., Cody, G.D., 2007. Geochimica et Cosmochimica Acta 71, 4380–4403. On the fate of carbonates and anhydrite in impact processes – evidence from the Chicxulub event Deutsch, A., Langenhorst, F., 2007. GFF 129, 155–160.
Environmental Geochemistry Sorption of PAHs to colloid dispersions of humic substances in water Arias-Este´vez, M., Ferna´ndez-Ga´ndara, D., Garcı´a-Falco´n, M., Garcı´a-Rı´o, L., Mejuto, J., Simal-Ga´ndara, J., 2007. Bulletin of Environmental Contamination and Toxicology 79, 251–254. Beach tar accumulation, transport mechanisms, and sources of variability at Coal Oil Point, California Del Sontro, T.S., Leifer, I., Luyendyk, B.P., Broitman, B.R., 2007. Marine Pollution Bulletin 54, 1461– 1471. High-resolution records of polycyclic aromatic hydrocarbons in the sediments of Lake Liangzi in central China during the last 100 yr Donyinah, S.K., Qi, S., Fei, Q., 2007. Environmental Geosciences 14, 149–157. The sedimentary fluxes of polycyclic aromatic hydrocarbons in the Yangtze River Estuary coastal sea for the past century Guo, Z., Lin, T., Zhang, G., Zheng, M., Zhang, Z., Hao, Y., Fang, M., 2007. Science of the Total Environment 386, 33–41. Predicting bioavailability of sediment polycyclic aromatic hydrocarbons to Hyalella azteca using equilibrium partitioning, supercritical fluid extraction, and pore water concentrations Hawthorne, S.B., Azzolina, N.A., Neuhauser, E.F., Kreitinger, J.P., 2007. Environmental Science & Technology 41, 6297–6304. In situ bioremediation Jørgensen, K.S., 2007. Advances in Applied Microbiology 61, 285–305. Enhanced diffusion of polycyclic aromatic hydrocarbons in artificial and natural aqueous solutions Mayer, P., Fernqvist, M.M., Christensen, P.S., Karlson, U., Trapp, S., 2007. Environmental Science & Technology 41, 6148–6155.
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An assessment of the biodegradation of petroleum hydrocarbons in contaminated soil using non-indigenous, commercial microbes Mohammed, D., Ramsubhag, A., Beckles, D., 2007. Water, Air, & Soil Pollution 182, 349–356. Seasonal variation of particulate lipophilic organic compounds at nonurban sites in Europe Oliveira, T.S., Pio, C.A., Alves, C.A., Silvestre, A.J.D., Evtyugina, M., Afonso, J.V., Fialho, P., Legrand, M., Puxbaum, H., Gelencse´r, A., 2007. Journal of Geophysical Research Atmospheres 112, Citation No. D23S09. Environmental monitoring of hydrocarbons: A chemical sensor perspective Pejcic, B., Eadington, P., Ross, A., 2007. Environmental Science & Technology 41, 6333–6342. Methodical approach for the use of GC-TOF MS for screening and confirmation of organic pollutants in environmental water Portole´s, T., Pitarch, E., Lo´pez, F.J., Sancho, J.V., Herna´ndez, F., 2007. Journal of Mass Spectrometry 42, 1175–1185. Geochemical heterogeneity and isotope geochemistry of natural attenuation processes in a gasoline-contaminated aquifer at the Hnevice site, Czech Republic Topinkova, B., Nesetril, K., Datel, J., Nol, O., Hosl, P., 2007. Hydrogeology Journal 15, 961–976.
Evolution/Paleontology/Palynology Strong coupling of predation intensity and diversity in the Phanerozoic fossil record Huntley, J.W., Kowalewski, M., 2007. Proceedings of the National Academy of Sciences USA 104, 15006– 15010. Radiation of Meso-Neoproterozoic and Early Cambrian protists inferred from the microfossil record of China Leiming, Y., Xunlai, Y., 2007. Palaeogeography, Palaeoclimatology, Palaeoecology 254, 350–361. Early Cambrian metazoan fossil record of South China: Generic diversity and radiation patterns Li, G., Steiner, M., Zhu, X., Yang, A., Wang, H., Erdtmann, B.D., 2007. Palaeogeography, Palaeoclimatology, Palaeoecology 254, 229–249. Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylum Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G.F., Chater, K.F., van Sinderen, D., 2007. Microbiology and Molecular Biology Reviews 71, 495–548. Eramosa Lagersta¨tte – Exceptionally preserved soft-bodied biotas with shallow-marine shelly and bioturbating organisms (Silurian, Ontario, Canada) von Bitter, P.H., Purnell, M.A., Tetreault, D.K., Stott, C.A., 2007. Geology 35, 879–882. Precambrian–Cambrian trace fossils from the Yangtze Platform (South China) and the early evolution of bilaterian lifestyles Weber, B., Steiner, M., Zhu, M.Y., 2007. Palaeogeography, Palaeoclimatology, Palaeoecology 254, 328–349. Exceptionally preserved Late Ordovician biotas from Manitoba, Canada Young, G.A., Rudkin, D.M., Dobrzanski, E.P., Robson, S.P., Nowlan, G.S., 2007. Geology 35, 883–886.
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Evolution: Origins of Life/Microbial Genomics Getting specificity from simplicity in putative proteins from the prebiotic Earth Lo´pez de la Osa, J., Bateman, D.A., Ho, S., Gonza´lez, C., Chakrabartty, A., Laurents, D.V., 2007. Proceedings of the National Academy of Sciences USA 104, 14941–14946.
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Composition and size distribution of coherent nanostructures in Athabasca bitumen and Maya crude oil Zhao, B., Shaw, J.M., 2007. Energy & Fuels 25, 2795–2804. Recent Sediments/Hydrosphere Formation of sulfur and nitrogen cross-linked macromolecules under aqueous conditions Amrani, A., Turner, J.W., Ma, Q., Tang, Y., Hatcher, P.G., 2007. Geochimica et Cosmochimica Acta 71, 4141–4160. Temporal variability in terrestrially-derived sources of particulate organic carbon in the lower Mississippi River and its upper tributaries Bianchi, T.S., Wysocki, L.A., Stewart, M., Filley, T.R., McKee, B.A., 2007. Geochimica et Cosmochimica Acta 71, 4425–4437. Organic-rich sediments in brine-filled Shaban and Kebrit deeps, northern Red Sea Botz, R., Schmidt, M., Wehner, H., Hufnagel, H., Stoffers, P., 2007. Chemical Geology 244, 520–553. Depth distributions of alkalinity, TCO2 and d13CTCO2 at SEATS time-series site in the northern South China Sea Chou, W.C., Sheu, D.D., Lee, B.S., Tseng, C.M., Chen, C.T.A., Wang, S.L., Wong, G.T.F., 2007. Deep Sea Research Part II: Topical Studies in Oceanography 54, 1469–1485. Depositional conditions and organic matter distribution in the Bornholm Basin, Baltic Sea Christoffersen, P., Christiansen, C., Jensen, J., Leipe, T., Hille, S., 2007. Geo-Marine Letters 27, 325–338. Lake Kivu’s methane gas: Natural risk, or source of energy and political security? Doevenspeck, M., 2007. Afrika Spectrum 42, 95–110. Carbon and nutrient mixed layer dynamics in the Norwegian Sea Findlay, H.S., Tyrrell, T., Bellerby, R.G.J., Merico, A., Skjelvan, I., 2007. Biogeosciences Discussions 4, 3229–3265. Biomarker and stable isotope characterization of coastal pond-derived organic matter, McMurdo Dry Valleys, Antarctica Hage, M.M., Uhle, M.E., Macko, S., 2007. Astrobiology 7, 645–661. Biogeochemical controls on distributions and fluxes of dissolved and particulate organic carbon in the northern South China Sea Hung, J.J., Wang, S.M., Chen, Y.L., 2007. Deep Sea Research Part II: Topical Studies in Oceanography 54, 1486–1503. Seasonal controls on the exchange of carbon and water in an Amazonian rain forest Hutyra, L.R., Munger, J.W., Saleska, S.R., Gottlieb, E., Daube, B.C., Dunn, A.L., Amaral, D.F., de Camargo, P.B., Wofsy, S.C., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G03008. On the treatment of particulate organic matter sinking in large-scale models of marine biogeochemical cycles Kriest, I., Oschlies, A., 2007. Biogeosciences Discussions 4, 3005–3040. Carbon isotopic composition of suspended and sinking particulate organic matter in the northern South China Sea – From production to deposition Liu, K.-K., Kao, S.-J., Hu, H.-C., Chou, W.-C., Hung, G.-W., Tseng, C.-M., 2007. Deep Sea Research Part II: Topical Studies in Oceanography 54, 1504–1527.
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Linking lithology and land use to sources of dissolved and particulate organic matter in headwaters of a temperate, passive-margin river system Longworth, B.E., Petsch, S.T., Raymond, P.A., Bauer, J.E., 2007. Geochimica et Cosmochimica Acta 71, 4233–4250. Aging of marine organic matter during cross-shelf lateral transport in the Benguela upwelling system revealed by compound-specific radiocarbon dating Mollenhauer, G., Inthorn, M., Vogt, T., Zabel, M., Sinninghe Damste´, J.S., Eglinton, T.I., 2007. Geochemistry Geophysics Geosystems 8, Citation No. Q09004. Primary productivity response to Heinrich events in the North Atlantic Ocean and Norwegian Sea Nave, S., Labeyrie, L., Gherardi, J., Caillon, N., Cortijo, E., Kissel, C., Abrantes, F., 2007. Paleoceanography 22, Citation No. PA3216. Advanced TMAH and TMAAc thermochemolysis–pyrolysis techniques for molecular characterization of size-separated fractions from aquatic dissolved organic matter Peuravuori, J., Pihlaja, K., 2007. Analytical and Bioanalytical Chemistry 389, 475–491. Distribution of inorganic and organic nutrients in the South Pacific Ocean – evidence for long-term accumulation of organic matter in nitrogen-depleted waters Raimbault, P., Garcia, N., Cerutti, F., 2007. Biogeosciences Discussions 4, 3041–3087. Carbon and oxygen dynamics of shallow aquatic systems: Process vectors and bacterial productivity Torgersen, T., Branco, B., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G03016. Marine organic matter: Biomarkers, isotopes and DNA Volkman, J.K (Ed.), 2006. The Handbook of Environmental Chemistry Vol. 2: Reactions and Processes, Part 2N, Springer, 374 pp. Stable isotope analysis reveals lower-order river dissolved inorganic carbon pools are highly dynamic Waldron, S., Scott, E.M., Soulsby, C., 2007. Environmental Science & Technology 41, 6156–6162. The flux of carbon from rivers: The case for flux from England and Wales Worrall, F., Guilbert, T., Besien, T., 2007. Biogeochemistry 86, 63–75. Seepage-Remote Detection Deep seeps tip off oil hunters Durham, L.S., 2007. AAPG Explorer 28, 20, 22. Soil Geochemistry Relative stability of soil carbon revealed by shifts in d15N and C:N ratio Conen, F., Zimmermann, M., Leifeld, J., Seth, B., Alewell, C., 2007. Biogeosciences Discussions 4, 2915– 2928. Scale-dependent relationships between soil organic carbon and urease activity Corstanje, R., Schulin, R., Lark, R.M., 2007. European Journal of Soil Science 58, 1087–1095. Short-term controls on the age of microbial carbon sources in boreal forest soils Czimczik, C.I., Trumbore, S.E., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G03001.
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Carbon in tundra soils in the Lake Labaz region of Arctic Siberia Gundelwein, A., Muller-Lupp, T., Sommerkorn, M., Haupt, E.T.K., Pfeiffer, E.M., Wiechmann, H., 2007. European Journal of Soil Science 58, 1164–1174. Comparison of quantification methods to measure fire-derived (black/elemental) carbon in soils and sediments using reference materials from soil, water, sediment and the atmosphere Hammes, K., Schmidt, M.W.I., Smernik, R.J., Currie, L.A., Ball, W.P., Nguyen, T.H., Louchouarn, P., ¨ ., Elmquist, M., Cornelissen, G., Skjemstad, J.O., Masiello, C.A., Song, J., Peng, Houel, S., Gustafsson, O P.a., Mitra, S., Dunn, J.C., Hatcher, P.G., Hockaday, W.C., Smith, D.M., Hartkopf-Fro¨der, C., Bo¨hmer, A., Lu¨er, B., Huebert, B.J., Amelung, W., Brodowski, S., Huang, L., Zhang, W., Gschwend, P.M., Flores-Cervantes, D.X., Largeau, C., Rouzaud, J.-N., Rumpel, C., Guggenberger, G., Kaiser, K., Rodionov, A., Gonzalez-Vila, F.J., Gonzalez-Perez, J.A., de la Rosa, J.M., Manning, D.A.C., Lo´pez-Cape´l, E., Ding, L., 2007. Global Biogeochemical Cycles 21, Citation No. GB3016. Fractionation of lignin during leaching and sorption and implications for organic matter "freshness" Hernes, P.J., Robinson, A.C., Aufdenkampe, A.K., 2007. Geophysical Research Letters 34, Citation No. L17401. Analysis of polynuclear aromatic and aliphatic components in soil humic acids using ruthenium tetroxide oxidation Ikeya, K., Ishida, Y., Ohtani, H., Yamamoto, S., Watanabe, A., 2007. European Journal of Soil Science 58, 1050–1061. Topographic influences on wildfire consumption of soil organic carbon in interior Alaska: Implications for black carbon accumulation Kane, E.S., E.S. Kasischke, D.W. Valentine, M.R. Turetsky, McGuire, A.D., 2007. Journal of Geophysical Research Biogeosciences 112, Citation No. G03017. Effects of molecular weight of natural organic matter on cadmium mobility in soil environments and its carbon isotope characteristics Mahara, Y., Kubota, T., Wakayama, R., Nakano-Ohta, T., Nakamura, T., 2007. Science of The Total Environment 387, 220–227. Determination of the fate of 13C labelled maize and wheat exudates in an agricultural soil during a short-term incubation Marx, M., Buegger, F., Gattinger, A., Zsolnay, A., Munch, J.C., 2007. European Journal of Soil Science 58, 1175–1185. MIOR: An individual-based model for simulating the spatial patterns of soil organic matter microbial decomposition Masse, D., Cambier, C., Brauman, A., Sall, S., Assigbetse, K., Chotte, J.L., 2007. European Journal of Soil Science 58, 1127–1135. Soil carbon saturation: Concept, evidence and evaluation Stewart, C., Paustian, K., Conant, R., Plante, A., Six, J., 2007. Biogeochemistry 86, 19–31. Assessment of degradation and generation of humus in a coffee soil affected by weed cover by means of a stable carbon isotopic ratio Watanabe, A., Takada, H., Sarno, Afandi, Adachi, T., Oki, Y., Senge, M., 2007. European Journal of Soil Science 58, 1042–1049.
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Expanded compilations of references with abstracts in Microsoft Word and ISI EndNote formats are available at: http://www.eaog.org/other/ref_update.html. Compiled by Clifford C. Walters Available online 31 January 2008