Geochemistry Articles – September 2012

Organic Geochemistry 54 (2013) e1–e29

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Organic Geochemistry journal homepage: www.elsevier.com/locate/orggeochem

Geochemistry Articles – September 2012 Analytical Chemistry

Improving the analytical performances of ICP-AES by using a high-temperature single-pass spray chamber and segmented-injections micro-sample introduction for the analysis of environmental samples Ardini, F., Grotti, M., Sanchez, R., Todoli, J.L., 2012. Journal of Analytical Atomic Spectrometry 27, 1400–1404. http://dx.doi.org/10.1039/C2JA30152K CO2 cryogenic modulation in comprehensive two dimensional gas chromatography influence of the stationary phase used for trapping Beldean-Galea, M.S., Thiebaut, D., Vial, J., Sassiat, P., Bouzige, M., Coman, M.-V., 20. Revista de Chimie 63, 754–758. http://www.revistadechimie.ro/Article_eng.asp?ID=3370 Solid-phase microextraction combined with comprehensive two-dimensional gas chromatography for fatty acid profiling of cell wall phospholipids Bogusz, S., Hantao, L.W., Braga, S.C.G.N., de Matos França, V.d.C.R., da Costa, M.F., Hamer, R.D., Ventura, D.F., Augusto, F., 2012. Journal of Separation Science 35, 2438–2444. http://dx.doi.org/10.1002/jssc.201200256 A simplified approach to direct SPE-MS Candish, E., Gooley, A., Wirth, H.-J., Dawes, P.A., Shellie, R.A., Hilder, E.F., 2012. Journal of Separation Science 35, 2399–2406. http://dx.doi.org/10.1002/jssc.201200466 Quantitative analysis of crude and stabilized bio-oils by comprehensive two-dimensional gas-chromatography Djokic, M.R., Van Geem, K.M., Dijkmans, T., Yildiz, G., Prins, W., 2012. Journal of Chromatography A 1257, 131–140. http://www.sciencedirect.com/science/article/pii/S0021967312010709?v=s5 Mass spectrometry detection in comprehensive liquid chromatography: Basic concepts, instrumental aspects, applications and trends Donato, P., Cacciola, F., Tranchida, P.Q., Dugo, P., Mondello, L., 2012. Mass Spectrometry Reviews 31, 523–559. http://dx.doi.org/10.1002/mas.20353 Rapid determination of polycyclic aromatic hydrocarbons (PAHs) in tea using two-dimensional gas chromatography coupled with time of flight mass spectrometry Drabova, L., Pulkrabova, J., Kalachova, K., Tomaniova, M., Kocourek, V., Hajslova, J., 2012. Talanta 100, 207–216. http://www.sciencedirect.com/science/article/pii/S0039914012006704?v=s5 Mass spectrometric elucidation of triacylglycerol content of Brevoortia tyrannus (menhaden) oil using non-aqueous reversed-phase liquid chromatography under ultra high pressure conditions Dugo, P., Beccaria, M., Fawzy, N., Donato, P., Cacciola, F., Mondello, L., 2012. Journal of Chromatography A 1259, 227–236. http://www.sciencedirect.com/science/article/pii/S0021967312004803 Effective characterization of petroleum C7+ fractions Eckert, E., Vanìk, T., Bìlohlav, Z., Zámostny´, P., 2012. Fuel 102, 545–553. http://www.sciencedirect.com/science/article/pii/S0016236112003481 Analysis of phospolipids and glycolipids by thin-layer chromatography–matrix-assisted laser desorption and ionization mass spectrometry Fuchs, B., 2012. Journal of Chromatography A 1259, 62–73. http://www.sciencedirect.com/science/article/pii/S0021967312004815 http://dx.doi.org/10.1016/j.orggeochem.2012.10.001

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Electrospray operational parameters in TOF-MS Glauner, T., Zavitsanos, A.P., 2012. Comprehensive Analytical Chemistry 58, 273–305. http://www.sciencedirect.com/science/article/pii/B9780444538109000031 Recent developments in liquid chromatography–mass spectrometry and related techniques Holèapek, M., Jirásko, R., Lísa, M., 2012. Journal of Chromatography A 1259, 3–15. http://www.sciencedirect.com/science/article/pii/S0021967312013064 High molecular weight non-polar hydrocarbons as pure model substances and in motor oil samples can be ionized without fragmentation by atmospheric pressure chemical ionization mass spectrometry Hourani, N., Kuhnert, N., 2012. Rapid Communications in Mass Spectrometry 26, 2365–2371. http://dx.doi.org/10.1002/rcm.6338 Electrochemistry coupled to (liquid chromatography/) mass spectrometry—Current state and future perspectives Jahn, S., Karst, U., 2012. Journal of Chromatography A 1259, 16–49. http://www.sciencedirect.com/science/article/pii/S0021967312007984 Thin-film microextraction offers another geometry for solid-phase microextraction Jiang, R., Pawliszyn, J., 2012. TrAC Trends in Analytical Chemistry 39, 245–253. http://www.sciencedirect.com/science/article/pii/S0165993612001999 Identification of oxygen-containing compounds in gasoline by two-dimensional gas chromatography with mass spectrometric detection Kanat’eva, A.Y., Dianov, M.E., Kurganov, A.A., 2012. Petroleum Chemistry (Neftekhimiya) 52, 356–361. http://dx.doi.org/10.1134/S0965544112050040 High mass resolution versus MS/MS Kaufmann, A., 2012. Comprehensive Analytical Chemistry 58, 169–215. http://www.sciencedirect.com/science/article/pii/B9780444538109000018 Petroleomics by ultrahigh-resolution time-of-flight mass spectrometry Klitzke, C.F., Corilo, Y.E., Siek, K., Binkley, J., Patrick, J., Eberlin, M.N., 2012. Energy & Fuels 26, 5787–5794. http://dx.doi.org/10.1021/ef300961c A method of calculating the second dimension hold-up time for comprehensive two-dimensional gas chromatography Koo, I., Zhao, Y., Zhang, J., Kim, S., Zhang, X., 2012. Journal of Chromatography A 1260, 193–199. http://www.sciencedirect.com/science/article/pii/S0021967312013027?v=s5 Characterization of acidic compounds in vacuum gas oils and their dewaxed oils by Fourier transform-ion cyclotron resonance mass spectrometry Li, X., Zhu, J., Wu, B., Mao, X., 2012. Energy & Fuels 26, 5646–5654. http://dx.doi.org/10.1021/ef300318t Sample preparation methods for subsequent determination of metals and non-metals in crude oil – a review Mello, P.A., Pereira, J.S.F., Mesko, M.F., Barin, J.S., Flores, E.M.M., 2012. Analytica Chimica Acta 746, 15–36. http://www.sciencedirect.com/science/article/pii/S0003267012011798?v=s5 Surfactant roles in modern sample preparation techniques: A review Moradi, M., Yamini, Y., 2012. Journal of Separation Science 35, 2319–2340. http://dx.doi.org/10.1002/jssc.201200368 Enantioseparation of chiral sulfonates by liquid chromatography and subcritical fluid chromatography Pell, R., Schuster, G., Ldmmerhofer, M., Lindner, W., 2012. Journal of Separation Science 35, 2521–2528. http://dx.doi.org/10.1002/jssc.201200448 Differentiation of complex lipid isomers by radical-directed dissociation mass spectrometry Pham, H.T., Ly, T., Trevitt, A.J., Mitchell, T.W., Blanksby, S.J., 2012. Analytical Chemistry 84, 7525–7532. http://dx.doi.org/10.1021/ac301652a Electrostatic-spray ionization mass spectrometry Qiao, L., Sartor, R., Gasilova, N., Lu, Y., Tobolkina, E., Liu, B., Girault, H.H., 2012. Analytical Chemistry 84, 7422–7430. http://dx.doi.org/10.1021/ac301332k Determination of 16 polycyclic aromatic hydrocarbons in seawater using molecularly imprinted solid-phase extraction coupled with gas chromatography-mass spectrometry Song, X., Li, J., Xu, S., Ying, R., Ma, J., Liao, C., Liu, D., Yu, J., Chen, L., 2012. Talanta 99, 75–82. http://www.sciencedirect.com/science/article/pii/S0039914012004006

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Mass spectral reference libraries: An ever-expanding resource for chemical identification Stein, S., 2012. Analytical Chemistry 84, 7274–7282. http://dx.doi.org/10.1021/ac301205z Quantitative assessment of the contribution of high resolution mass spectrometric analysis to the reliability of compound confirmation Stoev, G., Xuan, Y., Peycheva, M., Scigelova, M., 2012. Talanta 98, 19–27. http://www.sciencedirect.com/science/article/pii/S0039914012004936 Liquid chromatography–nuclear magnetic resonance coupling as alternative to liquid chromatography–mass spectrometry hyphenations: Curious option or powerful and complementary routine tool? Sturm, S., Seger, C., 2012. Journal of Chromatography A 1259, 50–61. http://www.sciencedirect.com/science/article/pii/S0021967312007340?v=s5 Soft-landing preparative mass spectrometry Verbeck, G., Hoffmann, W., Walton, B., 2012. Analyst 137, 4393–4407. http://dx.doi.org/10.1039/C2AN35550G Identification of the double-bond position in fatty acid methyl esters by liquid chromatography/atmospheric pressure chemical ionisation mass spectrometry Vrkoslav, V., Cvaèka, J., 2012. Journal of Chromatography A 1259, 244–250. http://www.sciencedirect.com/science/article/pii/S0021967312006474 Employment of tandem mass spectrometry for the accurate and specific identification of oligosaccharide structures Wu, S., Salcedo, J., Tang, N., Waddell, K., Grimm, R., German, J.B., Lebrilla, C.B., 2012. Analytical Chemistry 84, 7456–7462. http://dx.doi.org/10.1021/ac301398h Archaeological/Art Organic Chemistry Buddha from space—An ancient object of art made of a Chinga iron meteorite fragment Buchner, E., Schmieder, M., Kurat, G., Brandstdtter, F., Kramar, U., Ntaflos, T., Kröchert, J., 2012. Meteoritics & Planetary Science 47, 1491–1501. http://dx.doi.org/10.1111/j.1945-5100.2012.01409.x Ritual Black Drink consumption at Cahokia Crown, P.L., Emerson, T.E., Gu, J., Hurst, W.J., Pauketat, T.R., Ward, T., 2012. Proceedings of the National Academy of Sciences 109, 13944–13949. http://www.pnas.org/content/109/35/13944.abstract Analytical pyrolysis vs. classical wet chemical analysis to assess the decay of archaeological waterlogged wood £ucejko, J.J., Zborowska, M., Modugno, F., Colombini, M.P., Pr1dzyñski, W., 2012. Analytica Chimica Acta 745, 70–77. http://www.sciencedirect.com/science/article/pii/S0003267012011336 Amber sources and trade in the prehistory of the Iberian Peninsula Murillo-Barroso, M., Martinón-Torres, M., 2012. European Journal of Archaeology 15, 187–216. http://www.ingentaconnect.com/content/maney/eja/2012/00000015/00000002/art00002 Non-destructive crystal size determination in geological samples of archaeological use by means of infrared spectroscopy Olivares, M., Larrañaga, A., Irazola, M., Sarmiento, A., Murelaga, X., Etxebarria, N., 2012. Talanta 98, 172–177. http://www.sciencedirect.com/science/article/pii/S0039914012005334 The privileged burial of the Pava Pieve (Siena, 8th Century AD) Ricci, P., Mongelli, V., Vitiello, A., Campana, S., Sirignano, C., Rubino, M., Fornaciari, G., Lubritto, C., 2012. Rapid Communications in Mass Spectrometry 26, 2393–2398. http://dx.doi.org/10.1002/rcm.6302 Site-specific deamidation of glutamine: A new marker of bone collagen deterioration van Doorn, N.L., Wilson, J., Hollund, H., Soressi, M., Collins, M.J., 2012. Rapid Communications in Mass Spectrometry 26, 2319–2327. http://dx.doi.org/10.1002/rcm.6351 Astrobiology The Astrobiology in Secondary Classrooms (ASC) curriculum: Focusing upon diverse students and teachers Arino de la Rubia, L.S., 2012. Astrobiology 12, 892–899. http://dx.doi.org/10.1089/ast.2012.0841

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Chaotic exchange of solid material between planetary systems: Implications for lithopanspermia Belbruno, E., Moro-Martín, A., Malhotra, R., Savransky, D., 2012. Astrobiology 12, 754–774. http://dx.doi.org/10.1089/ast.2012.0825 Effects of simulated space radiation on immunoassay components for life-detection experiments in planetary exploration missions Derveni, M., Hands, A., Allen, M., Sims, M.R., Cullen, D.C., 2012. Astrobiology 12, 718–729. http://dx.doi.org/10.1089/ast.2011.0727 Carbonate precipitation under bulk acidic conditions as a potential biosignature for searching life on Mars Fernández-Remolar, D.C., Preston, L.J., Sánchez-Román, M., Izawa, M.R.M., Huang, L., Southam, G., Banerjee, N.R., Osinski, G.R., Flemming, R., Gómez-Ortíz, D., Prieto Ballesteros, O., Rodríguez, N., Amils, R., Darby Dyar, M., 2012. Earth and Planetary Science Letters 351–352, 13–26. http://www.sciencedirect.com/science/article/pii/S0012821X12003822 Long-term survival of microscopic animals under desiccation is not so long Fontaneto, D., Bunnefeld, N., Westberg, M., 2012. Astrobiology 12, 863–869. http://dx.doi.org/10.1089/ast.2012.0828 Thermal drilling in planetary ices: An analytic solution with application to planetary protection problems of radioisotope power sources Lorenz, R.D., 2012. Astrobiology 12, 799–802. http://dx.doi.org/10.1089/ast.2012.0816 The O/OREOS Mission: First science data from the Space Environment Viability of Organics (SEVO) payload Mattioda, A., Cook, A., Ehrenfreund, P., Quinn, R., Ricco, A.J., Squires, D., Bramall, N., Bryson, K., Chittenden, J., Minelli, G., Agasid, E., Allamandola, L., Beasley, C., Burton, R., Defouw, G., Diaz-Aguado, M., Fonda, M., Friedericks, C., Kitts, C., Landis, D., McIntyre, M., Neumann, M., Rasay, M., Ricks, R., Salama, F., Santos, O., Schooley, A., Yost, B., Young, A., 2012. Astrobiology 12, 841–853. http://dx.doi.org/10.1089/ast.2012.0861 Insights into the extremotolerance of Acinetobacter radioresistens 50v1, a Gram-negative bacterium isolated from the Mars Odyssey Spacecraft McCoy, K.B., Derecho, I., Wong, T., Tran, H.M., Huynh, T.D., La Duc, M.T., Venkateswaran, K., Mogul, R., 2012. Astrobiology 12, 854–862. http://dx.doi.org/10.1089/ast.2012.0835 Using a mini-Raman spectrometer to monitor the adaptive strategies of extremophile colonizers in arid deserts: Relationships between signal strength, adaptive strategies, solar radiation, and humidity Miralles, I., Jorge-Villar, S.E., Cantón, Y., Domingo, F., 2012. Astrobiology 12, 743–753. http://dx.doi.org/10.1089/ast.2011.0763 Mars Missions Morowitz, H., 2012. Astrobiology 12, 717–717. http://dx.doi.org/10.1089/ast.2012.8808 Rapid culture-independent microbial analysis aboard the International Space Station (ISS) stage two: Quantifying three microbial biomarkers Morris, H.C., Damon, M., Maule, J., Monaco, L.A., Wainwright, N., 2012. Astrobiology 12, 830–840. http://dx.doi.org/10.1089/ast.2012.0863 LIFE: Life Investigation for Enceladus A sample return mission concept in search for evidence of life Tsou, P., Brownlee, D.E., McKay, C.P., Anbar, A.D., Yano, H., Altwegg, K., Beegle, L.W., Dissly, R., Strange, N.J., Kanik, I., 2012. Astrobiology 12, 730–742. http://dx.doi.org/10.1089/ast.2011.0813 Astrobiological complexity with probabilistic cellular automata Vukotiæ, B., Æirkoviæ, M., 2012. Origins of Life and Evolution of Biospheres 42, 347–371. http://dx.doi.org/10.1007/s11084-012-9293-2 My life as an astrobiologist Walter, M., 2012. Astrobiology 12, 803–807. http://dx.doi.org/10.1089/ast.2012.0862 Biochemistry

Terpenoid synthase structures: A so far incomplete view of complex catalysis Gao, Y., Honzatko, R.B., Peters, R.J., 2012. Natural Product Reports 29, 1153–1175. http://dx.doi.org/10.1039/C2NP20059G

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A seventh bacterial chlorophyll driving a large light-harvesting antenna Harada, J., Mizoguchi, T., Tsukatani, Y., Noguchi, M., Tamiaki, H., 2012. Scientific Reports 2, Article No. 671. http://dx.doi.org/10.1038/srep00671 Control of archaellation in Sulfolobus acidocaldarius: Unravelling of the regulation of surface structure biosynthesis in Archaea begins Jarrell, K.F., 2012. Molecular Microbiology 86, 1–5. http://dx.doi.org/10.1111/j.1365-2958.2012.08191.x Energy conservation of anaerobic respiration Jin, Q., 2012. American Journal of Science 312, 573–628. http://www.ajsonline.org/content/312/6/573.abstract Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis Lie, T.J., Costa, K.C., Lupa, B., Korpole, S., Whitman, W.B., Leigh, J.A., 2012. Proceedings of the National Academy of Sciences 109, 15473–15478. http://www.pnas.org/content/109/38/15473.abstract Thermodynamics of formate-oxidizing metabolism and implications for H2 production Lim, J.K., Bae, S.S., Kim, T.W., Lee, J.-H., Lee, H.S., Kang, S.G., 2012. Applied and Environmental Microbiology 78, 7393–7397. http://aem.asm.org/content/78/20/7393.abstract Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea Lund, M.B., Smith, J.M., Francis, C.A., 2012. ISME Journal 6, 1966–1977. http://dx.doi.org/10.1038/ismej.2012.40 Diversity of 5S rRNA genes within individual prokaryotic genomes Pei, A., Li, H., Oberdorf, W.E., Alekseyenko, A.V., Parsons, T., Yang, L., Gerz, E.A., Lee, P., Xiang, C., Nossa, C.W., Pei, Z., 2012. FEMS Microbiology Letters 335, 11–18. http://dx.doi.org/10.1111/j.1574-6968.2012.02632.x Pyranopterin conformation defines the function of molybdenum and tungsten enzymes Rothery, R.A., Stein, B., Solomonson, M., Kirk, M.L., Weiner, J.H., 2012. Proceedings of the National Academy of Sciences 109, 14773–14778. http://www.pnas.org/content/109/37/14773.abstract Biosynthesis of a novel C30 carotenoid in Bacillus firmus isolates Steiger, S., Perez-Fons, L., Fraser, P.D., Sandmann, G., 2012. Journal of Applied Microbiology 113, 888–895. http://dx.doi.org/10.1111/j.1365-2672.2012.05377.x Ornithine lipids and their structural modifications: From A to E and beyond Vences-Guzmán, M.Á., Geiger, O., Sohlenkamp, C., 2012. FEMS Microbiology Letters 335, 1–10. http://dx.doi.org/10.1111/j.1574-6968.2012.02623.x Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla Wrighton, K.C., Thomas, B.C., Sharon, I., Miller, C.S., Castelle, C.J., VerBerkmoes, N.C., Wilkins, M.J., Hettich, R.L., Lipton, M.S., Williams, K.H., Long, P.E., Banfield, J.F., 2012. Science 337, 1661–1665. http://www.sciencemag.org/content/337/6102/1661.abstract Biodegradation Bacterial community dynamics during the preferential degradation of aromatic hydrocarbons by a microbial consortium Bacosa, H.P., Suto, K., Inoue, C., 2012. International Biodeterioration & Biodegradation 74, 109–115. http://www.sciencedirect.com/science/article/pii/S0964830512002053 Large carbon isotope fractionation during biodegradation of chloroform by Dehalobacter cultures Chan, C.C.H., Mundle, S.O.C., Eckert, T., Liang, X., Tang, S., Lacrampe-Couloume, G., Edwards, E.A., Sherwood Lollar, B., 2012. Environmental Science & Technology 46, 10154–10160. http://dx.doi.org/10.1021/es3010317 Removal of crude oil by microbial consortium isolated from oil-spilled area in the Korean western coast Cho, S.-H., Oh, K.-H., 2012. Bulletin of Environmental Contamination and Toxicology 89, 680–685. http://dx.doi.org/10.1007/s00128-012-0723-7 Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil de Menezes, A., Clipson, N., Doyle, E., 2012. Environmental Microbiology 14, 2577–2588. http://dx.doi.org/10.1111/j.1462-2920.2012.02781.x

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More functional genes and convergent overall functional patterns detected by geochip in phenanthrene-spiked soils Ding, G.-C., Heuer, H., He, Z., Xie, J., Zhou, J., Smalla, K., 2012. FEMS Microbiology Ecology 82, 148–156. http://dx.doi.org/10.1111/j.1574-6941.2012.01413.x Medium-chain-length polyhydroxyalkanoate production by newly isolated Pseudomonas sp. TN301 from a wide range of polyaromatic and monoaromatic hydrocarbons Narancic, T., Kenny, S.T., Djokic, L., Vasiljevic, B., O’Connor, K.E., Nikodinovic-Runic, J., 2012. Journal of Applied Microbiology 113, 508–520. http://dx.doi.org/10.1111/j.1365-2672.2012.05353.x Soil microbial degradation of vacuum residue Tabatabaee, M.S., Assadi, M.A., Heydarian, M., Sepahi, A.A., 2012. Petroleum Science and Technology 30, 2218–2226. http://dx.doi.org/10.1080/10916466.2010.511389 Biofilm lifestyle enhances diesel bioremediation and biosurfactant production in the Antarctic polyhydroxyalkanoate producer Pseudomonas extremaustralis Tribelli, P.M., Di Martino, C., López, N.I., Raiger Iustman, L.J., 2012. Biodegradation 23, 645–651. http://dx.doi.org/10.1007/s10532-012-9540-2 Biodegradation Pathways/Genomics Aerobic biodegradation of phenols: A comprehensive review Al-Khalid, T., El-Naas, M.H., 2011. Critical Reviews in Environmental Science and Technology 42, 1631–1690. http://dx.doi.org/10.1080/10643389.2011.569872 Proteogenomic elucidation of the initial steps in the benzene degradation pathway of a novel halophile, Arhodomonas sp. strain Rozel, isolated from a hypersaline environment Dalvi, S., Azetsu, S., Patrauchan, M.A., Aktas, D.F., Fathepure, B.Z., 2012. Applied and Environmental Microbiology 78, 7309–7316. http://aem.asm.org/content/78/20/7309.abstract Phenanthrene biodegradation by halophilic Martelella sp. AD-3 Feng, T.c., Cui, C.z., Dong, F., Feng, Y.y., Liu, Y.d., Yang, X.m., 2012. Journal of Applied Microbiology 113, 779–789. http://dx.doi.org/10.1111/j.1365-2672.2012.05386.x Complete genome sequence of the naphthalene-degrading Pseudomonas putida strain ND6 Li, S., Zhao, H., Li, Y., Niu, S., Cai, B., 2012. Journal of Bacteriology 194, 5154–5155. http://jb.asm.org/content/194/18/5154.abstract Biogeochemistry Surface area expansion of electrodes with grass-like nanostructures and gold nanoparticles to enhance electricity generation in microbial fuel cells Alatraktchi, F.A., Zhang, Y., Noori, J.S., Angelidaki, I., 2012. Bioresource Technology 123, 177–183. http://www.sciencedirect.com/science/article/pii/S0960852412010954 Biotransformation of heavy metals from soil in synthetic medium enriched with glucose and Shewanella sp. HN-41 at various pH Ayyasamy, P.M., Lee, S., 2012. Geomicrobiology Journal 29, 843–851. http://dx.doi.org/10.1080/01490451.2011.635758 Rates of sulfide mineral oxidation by acidophilic chemolithotrophic microbial communities from various sources Bulaev, A.G., Pivovarova, T.A., Kuznetsov, B.B., Kolganova, T.V., Kondrat’eva, T.F., 2012. Microbiology 81, 397–404. http://dx.doi.org/10.1134/S0026261712040030 Biogeochemical reduction processes in a hyper-alkaline leachate affected soil profile Burke, I.T., Mortimer, R.J.G., Palaniyandi, S., Whittleston, R.A., Lockwood, C.L., Ashley, D.J., Stewart, D.I., 2012. Geomicrobiology Journal 29, 769–779. http://dx.doi.org/10.1080/01490451.2011.619638 Sedimentological imprint on subseafloor microbial communities in western Mediterranean Sea Quaternary sediments Ciobanu, M.C., Rabineau, M., Droz, L., Révillon, S., Ghiglione, J.F., Dennielou, B., Jorry, S.J., Kallmeyer, J., Etoubleau, J., Pignet, P., Crassous, P., Vandenabeele-Trambouze, O., Laugier, J., Guégan, M., Godfroy, A., Alain, K., 2012. Biogeosciences 9, 3491–3512. http://www.biogeosciences.net/9/3491/2012/ Molecular characterization of endophytic bacteria from metal hyperaccumulator aquatic plant (Eichhornia crassipes) and its role in heavy metal removal El-Deeb, B., Gherbawy, Y., Hassan, S., 2012. Geomicrobiology Journal 29, 906–915. http://dx.doi.org/10.1080/01490451.2011.635764

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Intracellularly grown gold nanoislands as SERS substrates for monitoring chromate, sulfate and nitrate localization sites in remediating bacteria biofilms by Raman chemical imaging Ravindranath, S.P., Kadam, U.S., Thompson, D.K., Irudayaraj, J., 2012. Analytica Chimica Acta 745, 1–9. http://www.sciencedirect.com/science/article/pii/S0003267012011245 Geochemistry of deep sea sediments at cold seep sites in the Nankai Trough: Insights into the effect of anaerobic oxidation of methane Sato, H., Hayashi, K.-i., Ogawa, Y., Kawamura, K., 2012. Marine Geology 323–325, 47–55. http://www.sciencedirect.com/science/article/pii/S0025322712001648 Temperature characteristics of bacterial sulfate reduction in continental shelf and slope sediments Sawicka, J.E., Jørgensen, B.B., Brüchert, V., 2012. Biogeosciences 9, 3425–3435. http://www.biogeosciences.net/9/3425/2012/ Bacterioplankton groups involved in the uptake of phosphate and dissolved organic phosphorus in a mesocosm experiment with P-starved Mediterranean waters Sebastián, M., Pitta, P., González, J.M., Thingstad, T.F., Gasol, J.M., 2012. Environmental Microbiology 14, 2334–2347. http://dx.doi.org/10.1111/j.1462-2920.2012.02772.x Mixed bacterial consortium as an emerging tool to remove hazardous trace metals from coal Singh, P.K., Singh, A.L., Kumar, A., Singh, M.P., 2012. Fuel 102, 227–230. http://www.sciencedirect.com/science/article/pii/S0016236112004590 Long-range electron transport in Geobacter sulfurreducens biofilms is redox gradient-driven Snider, R.M., Strycharz-Glaven, S.M., Tsoi, S.D., Erickson, J.S., Tender, L.M., 2012. Proceedings of the National Academy of Sciences 109, 15467–15472. http://www.pnas.org/content/109/38/15467.abstract Combination of rolling vibration and serpentinite induces the formation of penetration-intermediates Somiya, Y., Higo, N., Yoshida, N., 2012. Geomicrobiology Journal 29, 820–829. http://dx.doi.org/10.1080/01490451.2011.635756 Cooperation of three denitrifying bacteria in nitrate removal of acidic nitrate- and uranium-contaminated groundwater Spain, A.M., Krumholz, L., 2012. Geomicrobiology Journal 29, 830–842. http://dx.doi.org/10.1080/01490451.2011.635757 Influence of terminal electron acceptor availability to the anodic oxidation on the electrogenic activity of microbial fuel cell (MFC) Srikanth, S., Venkata Mohan, S., 2012. Bioresource Technology 123, 480–487. http://www.sciencedirect.com/science/article/pii/S0960852412010966 Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter: A demonstration using a high sensitivity cultivation-based approach Watanabe, K., Komatsu, N., Kitamura, T., Ishii, Y., Park, H.-D., Miyata, R., Noda, N., Sekiguchi, Y., Satou, T., Watanabe, M., Yamamura, S., Imai, A., Hayashi, S., 2012. Environmental Microbiology 14, 2511–2525. http://dx.doi.org/10.1111/j.1462-2920.2012.02815.x Effect of microbial treatment on the prevention and removal of paraffin deposits on stainless steel surfaces Xiao, M., Zhang, Z.-Z., Lu, M., Luo, Y.-J., Qiao, W., Sun, S.-S., Zhong, W.-Z., Zhang, M., Li, W.-H., 2012. Bioresource Technology 124, 227–232. http://www.sciencedirect.com/science/article/pii/S0960852412011108?v=s5 Biomass/Biofuels Hydrothermal processing of algal biomass for the production of biofuels and chemicals Biller, P., Ross, A.B., 2012. Biofuels 3, 603–623. http://dx.doi.org/10.4155/bfs.12.42 Characterization of the lipid accumulation in a tropical freshwater microalgae Chlorococcum sp Harwati, T.U., Willke, T., Vorlop, K.D., 2012. Bioresource Technology 121, 54–60. http://www.sciencedirect.com/science/article/pii/S0960852412010127 Escherichia coli for biofuel production: Bridging the gap from promise to practice Huffer, S., Roche, C.M., Blanch, H.W., Clark, D.S., 2012. Trends in Biotechnology 30, 538–545. http://www.sciencedirect.com/science/article/pii/S0167779912001126 Butanol production from renewable biomass by Clostridia Jang, Y.-S., Malaviya, A., Cho, C., Lee, J., Lee, S.Y., 2012. Bioresource Technology 123, 653–663. http://www.sciencedirect.com/science/article/pii/S0960852412011583

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Solvent-extractable polycyclic aromatic hydrocarbons in biochar: Influence of pyrolysis temperature and feedstock Keiluweit, M., Kleber, M., Sparrow, M.A., Simoneit, B.R.T., Prahl, F.G., 2012. Environmental Science & Technology 46, 9333–9341. http://dx.doi.org/10.1021/es302125k Effect of thermal pretreatments on hydrocarbon recovery from Botryococcus braunii Magota, A., Saga, K., Okada, S., Atobe, S., Imou, K., 2012. Bioresource Technology 123, 195–198. http://www.sciencedirect.com/science/article/pii/S0960852412011492?v=s5 Evaluating the potential use of myxomycetes as a source of lipids for biodiesel production Tran, H.T.M., Stephenson, S.L., Chen, Z., Pollock, E.D., Goggin, F.L., 2012. Bioresource Technology 123, 386–389. http://www.sciencedirect.com/science/article/pii/S0960852412010905 Biodiesel synthesis by a one-step method in a genetically engineered Escherichia coli using rice straw hydrolysate and restaurant oil wastes as raw materials Wang, B., Lin, H., Zhan, J., Yang, Y., Zhou, Q., Zhao, Y., 2012. Journal of Applied Microbiology 113, 531–540. http://dx.doi.org/10.1111/j.1365-2672.2012.05357.x Chemical and bioassay characterisation of nitrogen availability in biochar produced from dairy manure and biosolids Wang, T., Camps Arbestain, M., Hedley, M., Bishop, P., 2012. Organic Geochemistry 51, 45–54. http://www.sciencedirect.com/science/article/pii/S0146638012001532 Isolation of a novel strain of Monoraphidium sp. and characterization of its potential application as biodiesel feedstock Yu, X., Zhao, P., He, C., Li, J., Tang, X., Zhou, J., Huang, Z., 2012. Bioresource Technology 121, 256–262. http://www.sciencedirect.com/science/article/pii/S0960852412010425 Carbon Cycle Evidence for methane production by saprotrophic fungi Lenhart, K., Bunge, M., Ratering, S., Neu, T.R., Schüttmann, I., Greule, M., Kammann, C., Schnell, S., Müller, C., Zorn, H., Keppler, F., 2012. Nature Communications 3, 1046. http://dx.doi.org/10.1038/ncomms2049 Impact of an 8.2-kyr-like event on methane emissions in northern peatlands Zürcher, S., Spahni, R., Joos, F., Steinacher, M., Fischer, H., 2012. Biogeosciences Discussions 9, 13243–13286. http://www.biogeosciences-discuss.net/9/13243/2012/ Carbon Sequestration Effect of permeability anisotropy on buoyancy-driven flow for CO2 sequestration in saline aquifers Cheng, P., Bestehorn, M., Firoozabadi, A., 2012. Water Resources Research 48, Citation No. W09539. http://dx.doi.org/10.1029/2012WR011939 Pore-lining phases and capillary breakthrough pressure of mudstone caprocks: Sealing efficiency of geologic CO2 storage sites Heath, J.E., Dewers, T.A., McPherson, B.J.O.L., Nemer, M.B., Kotula, P.G., 2012. International Journal of Greenhouse Gas Control 11, 204–220. http://www.sciencedirect.com/science/article/pii/S1750583612001867 Lithologic, mineralogical, and petrophysical characteristics of the Eau Claire Formation: Complexities of a carbon storage system seal Neufelder, R.J., Bowen, B.B., Lahann, R.W., Rupp, J.A., 2012. Environmental Geosciences 19, 81–104. http://eg.geoscienceworld.org/content/19/3/81.abstract Impact of top-surface morphology on CO2 storage capacity Nilsen, H.M., Syversveen, A.R., Lie, K.-A., Tveranger, J., Nordbotten, J.M., 2012. International Journal of Greenhouse Gas Control 11, 221–235. http://www.sciencedirect.com/science/article/pii/S1750583612001971 Evaluation through column leaching tests of metal release from contaminated estuarine sediment subject to CO2 leakages from carbon capture and storage sites Payán, M.C., Galan, B., Coz, A., Vandecasteele, C., Viguri, J.R., 2012. Environmental Pollution 171, 174–184. http://www.sciencedirect.com/science/article/pii/S0269749112003570 Comparative analysis of carbon dioxide storage resource assessment methodologies Popova, O.H., Small, M.J., McCoy, S.T., Thomas, A.C., Karimi, B., Goodman, A., Carter, K.M., 2012. Environmental Geosciences 19, 105–124. http://eg.geoscienceworld.org/content/19/3/105.abstract CO2 storage capacity assessment of deep saline aquifers in the Subei Basin, East China Qiao, X., Li, G., Li, M., Wang, Z., 2012. International Journal of Greenhouse Gas Control 11, 52–63. http://www.sciencedirect.com/science/article/pii/S1750583612001776

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An experimental study of CO2–brine–rock interaction at in situ pressure–temperature reservoir conditions Yu, Z., Liu, L., Yang, S., Li, S., Yang, Y., 2012. Chemical Geology 326–327, 88–101. http://www.sciencedirect.com/science/article/pii/S0009254112003361 Coal/Peat/Lignite Geochemistry

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Palaeontology: Slowed by sulphide Meyer, K., 2012. Nature Geoscience 5, 593–594. http://dx.doi.org/10.1038/ngeo1566 Ordovician ash geochemistry and the establishment of land plants Parnell, J., Foster, S., 2012. Geochemical Transactions 13, doi:10.1186/1467-4866-13-7; 7pp. http://www.geochemicaltransactions.com/content/13/1/7 Arthropods in amber from the Triassic Period Schmidt, A.R., Jancke, S., Lindquist, E.E., Ragazzi, E., Roghi, G., Nascimbene, P.C., Schmidt, K., Wappler, T., Grimaldi, D.A., 2012. Proceedings of the National Academy of Sciences 109, 14796–14801. http://www.pnas.org/content/109/37/14796.abstract Molecular analysis of the amphioxus frontal eye unravels the evolutionary origin of the retina and pigment cells of the vertebrate eye Vopalensky, P., Pergner, J., Liegertova, M., Benito-Gutierrez, E., Arendt, D., Kozmik, Z., 2012. Proceedings of the National Academy of Sciences 109, 15383–15388. http://www.pnas.org/content/109/38/15383.abstract Evolution: Origins of Life/Microbial Genomics

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A selective force favoring increased G+C content in bacterial genes Raghavan, R., Kelkar, Y.D., Ochman, H., 2012. Proceedings of the National Academy of Sciences 109, 14504–14507. http://www.pnas.org/content/109/36/14504.abstract Refining the genetic alphabet: A late-period selection pressure? Rios, A.C., Tor, Y., 2012. Astrobiology 12, 884–891. http://dx.doi.org/10.1089/ast.2011.0789 Reduction of nitrite and nitrate to ammonium on pyrite Singireddy, S., Gordon, A.D., Smirnov, A., Vance, M.A., Schoonen, M.A.A., Szilagyi, R.K., Strongin, D.R., 2012. Origins of Life and Evolution of Biospheres 42, 275–294. http://dx.doi.org/10.1007/s11084-012-9271-8 Oxygen and hydrogen peroxide in the early evolution of life on Earth: In silico comparative analysis of biochemical pathways Šlesak, I., Šlesak, H., Kruk, J., 2012. Astrobiology 12, 775–784. http://dx.doi.org/10.1089/ast.2011.0704 A comment on ‘‘Separation of chiral molecules: A way to homochirality’’ Tencer, M., Bielski, R., 2012. Origins of Life and Evolution of Biospheres 42, 373–374. http://dx.doi.org/10.1007/s11084-012-9272-7 Evolutionary trajectories explain the diversified evolution of isogamy and anisogamy in marine green algae Togashi, T., Bartelt, J.L., Yoshimura, J., Tainaka, K.-i., Cox, P.A., 2012. Proceedings of the National Academy of Sciences 109, 13692–13697. http://www.pnas.org/content/109/34/13692.abstract Betaproteobacterial symbionts of the ciliate Euplotes: Origin and tangled evolutionary path of an obligate microbial association Vannini, C., Ferrantini, F., Ristori, A., Verni, F., Petroni, G., 2012. Environmental Microbiology 14, 2553–2563. http://dx.doi.org/10.1111/j.1462-2920.2012.02760.x Enhanced photocatalytic performance of ZnS for reversible amination of a-oxo acids by hydrothermal treatment Wang, W., Li, Q., Liu, X., Yang, Y., Su, W., 2012. Origins of Life and Evolution of Biospheres 42, 263–273. http://dx.doi.org/10.1007/s11084-012-9275-4 Autocatalytic replication and homochirality in biopolymers: Is homochirality a requirement of life or a result of it? Wu, M., Walker, S.I., Higgs, P.G., 2012. Astrobiology 12, 818–829. http://dx.doi.org/10.1089/ast.2012.0819 Did mineral surface chemistry and toxicity contribute to evolution of microbial extracellular polymeric substances? Xu, J., Campbell, J.M., Zhang, N., Hickey, W.J., Sahai, N., 2012. Astrobiology 12, 785–798. http://dx.doi.org/10.1089/ast.2011.0776 Darwinian behavior in a cold, sporadically fed pool of ribonucleotides Yarus, M., 2012. Astrobiology 12, 870–883. http://dx.doi.org/10.1089/ast.2012.0860 Fluid Inclusions Methane and propane micro-inclusions in olivine in titanoclinohumite-bearing dunites from the Sanbagawa high-P metamorphic belt, Japan: Hydrocarbon activity in a subduction zone and Ti mobility Arai, S., Ishimaru, S., Mizukami, T., 2012. Earth and Planetary Science Letters 353–354, 1–11. http://www.sciencedirect.com/science/article/pii/S0012821X12004256 Geology Relating petroleum system and play development to basin evolution: Brazilian South Atlantic margin Beglinger, S.E., Doust, H., Cloetingh, S., 2012. Petroleum Geoscience 18, 315–336. http://pg.lyellcollection.org/content/18/3/315.abstract Giant magnetofossils and hyperthermal events Chang, L., Roberts, A.P., Williams, W., Fitz Gerald, J.D., Larrasoaña, J.C., Jovane, L., Muxworthy, A.R., 2012. Earth and Planetary Science Letters 351–352, 258–269. http://www.sciencedirect.com/science/article/pii/S0012821X12004062 Study of thermochemical exchange effect between organic nitrogen and inorganic oxygen in carbonate rocks Ding, K., Wang, H., Uo, Y., Yamg, H., Yu, Q., 2011. Acta Sedimentologica Sinica, 29, 1180–1189.

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Geoneutrinos and the radioactive power of the Earth Dye, S.T., 2012. Reviews of Geophysics 50, Citation No. RG3007. http://dx.doi.org/10.1029/2012RG000400 Granulites, CO2 and graphite Huizenga, J.M., Touret, J.L.R., 2012. Gondwana Research 22, 799–809. http://www.sciencedirect.com/science/article/pii/S1342937X12000937?v=s5 An (U-Th)/He age for the shallow-marine Wetumpka impact structure, Alabama, USA Wartho, J.-A., Van Soest, M.C., King Jr., D.T., Petruny, L.W., 2012. Meteoritics & Planetary Science 47, 1243–1255. http://dx.doi.org/10.1111/j.1945-5100.2012.01381.x Hydrates Seismic evidence for shallow gas-escape features associated with a retreating gas hydrate zone offshore west Svalbard Sarkar, S., Berndt, C., Minshull, T.A., Westbrook, G.K., Klaeschen, D., Masson, D.G., Chabert, A., Thatcher, K.E., 2012. Journal of Geophysical Research - Solid Earth. 117, Citation No. B09102. http://dx.doi.org/10.1029/2011JB009126 Hydrate decomposition and its material balance in a volumetric tilted hydrate-capped gas reservoir by method of depressurization Tabatabaie, S.H., Pooladi-Darvish, M., 2012. SPE Reservoir Evaluation & Engineering 15, 410–422. http://www.spe.org/ejournals/jsp/journalapp.jsp?pageType=Preview&jid=EREE&mid=SPE-137610-PA Numerical evidence of gas hydrate detection by means of electroseismics Zyserman, F.I., Gauzellino, P.M., Santos, J.E., 2012. Journal of Applied Geophysics 86, 98–108. http://www.sciencedirect.com/science/article/pii/S0926985112001450?v=s5 Isotope Geochemistry Evaluation of boron isotope ratio as a pH proxy in the deep sea coral Desmophyllum dianthus: Evidence of physiological pH adjustment Anagnostou, E., Huang, K.F., You, C.F., Sikes, E.L., Sherrell, R.M., 2012. Earth and Planetary Science Letters 349–350, 251–260. http://www.sciencedirect.com/science/article/pii/S0012821X12003652 Distinguishing wild ruminant lipids by gas chromatography/combustion/isotope ratio mass spectrometry Craig, O.E., Allen, R.B., Thompson, A., Stevens, R.E., Steele, V.J., Heron, C., 2012. Rapid Communications in Mass Spectrometry 26, 2359–2364. http://dx.doi.org/10.1002/rcm.6349 Characterization of diesel fuel by chemical separation combined with capillary gas chromatography (GC) isotope ratio mass spectrometry (IRMS) Harvey, S.D., Jarman, K.H., Moran, J.J., Sorensen, C.M., Wright, B.W., 2012. Talanta 99, 262–269. http://www.sciencedirect.com/science/article/pii/S0039914012004298 The flux of iron and iron isotopes from San Pedro Basin sediments John, S.G., Mendez, J., Moffett, J., Adkins, J., 2012. Geochimica et Cosmochimica Acta 93, 14–29. http://www.sciencedirect.com/science/article/pii/S0016703712003547 Sulfur, carbon, hydrogen, and oxygen isotope geochemistry of the Idaho cobalt belt Johnson, C.A., Bookstrom, A.A., Slack, J.F., 2012. Economic Geology 107, 1207–1221. http://economicgeology.org/content/107/6/1207.abstract Online stable isotope analysis of dissolved organic carbon size classes using size exclusion chromatography coupled to an isotope ratio mass spectrometer Malik, A., Scheibe, A., LokaBharathi, P.A., Gleixner, G., 2012. Environmental Science & Technology 46, 10123–10129. http://dx.doi.org/10.1021/es302467y A fit-for purpose procedure for lead isotopic ratio determination in crude oil, asphaltene and kerogen samples by MC-ICPMS Ortega, G.S., Pecheyran, C., Berail, S., Donard, O.F.X., 2012. Journal of Analytical Atomic Spectrometry 27, 1447–1456. http://dx.doi.org/10.1039/C2JA30143A Carbonate clumped isotope bond reordering and geospeedometry Passey, B.H., Henkes, G.A., 2012. Earth and Planetary Science Letters 351–352, 223–236. http://www.sciencedirect.com/science/article/pii/S0012821X12003883 Species-specific stable isotope analysis by the hyphenation of chromatographic techniques with MC-ICPMS Rodríguez-González, P., Epov, V.N., Pecheyran, C., Amouroux, D., Donard, O.F.X., 2012. Mass Spectrometry Reviews 31, 504–521. http://dx.doi.org/10.1002/mas.20352

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Geochemistry, and carbon, oxygen and strontium isotope composition of brachiopods from the Khuff Formation of Oman and Saudi Arabia Stephenson, M.H., Angiolini, L., Leng, M.J., Darbyshire, D.P.F., 2012. GeoArabia 17, 61–76. http://www.gulfpetrolink.net/publication/vol17.php Practical considerations in the determination of compound-specific amino acid d15N values in animal and plant tissues by gas chromatography-combustion-isotope ratio mass spectrometry, following derivatisation to their N-acetylisopropyl esters Styring, A.K., Kuhl, A., Knowles, T.D.J., Fraser, R.A., Bogaard, A., Evershed, R.P., 2012. Rapid Communications in Mass Spectrometry 26, 2328–2334. http://dx.doi.org/10.1002/rcm.6322 An isotopic (D14C, d13C, and d15N) investigation of the composition of particulate organic matter and zooplankton food sources in Lake Superior and across a size-gradient of aquatic systems Zigah, P.K., Minor, E.C., Werne, J.P., Leigh McCallister, S., 2012. Biogeosciences 9, 3663–3678. http://www.biogeosciences.net/9/3663/2012/ Microbiology/Extremophiles - Microbial Ecology The revised classification of Eukaryotes Adl, S.M., Simpson, A.G.B., Lane, C.E., Lukeš, J., Bass, D., Bowser, S.S., Brown, M.W., Burki, F., Dunthorn, M., Hampl, V., Heiss, A., Hoppenrath, M., Lara, E., le Gall, L., Lynn, D.H., McManus, H., Mitchell, E.A.D., Mozley-Stanridge, S.E., Parfrey, L.W., Pawlowski, J., Rueckert, S., Shadwick, L., Schoch, C.L., Smirnov, A., Spiegel, F.W., 2012. Journal of Eukaryotic Microbiology 59, 429–514. http://dx.doi.org/10.1111/j.1550-7408.2012.00644.x Interactions between diatoms and bacteria Amin, S.A., Parker, M.S., Armbrust, E.V., 2012. Microbiology and Molecular Biology Reviews 76, 667–684. http://mmbr.asm.org/content/76/3/667.abstract Resistance and resilience of microbial communities – temporal and spatial insurance against perturbations Baho, D.L., Peter, H., Tranvik, L.J., 2012. Environmental Microbiology 14, 2283–2292. http://dx.doi.org/10.1111/j.1462-2920.2012.02754.x Primary production and respiration of hypersaline microbial mats as a response for high and low CO2 availability Bento, L., Enrich-Prast, A., Nielsen, L.P., 2012. Biogeosciences Discussions 9, 12735–12755. http://www.biogeosciences-discuss.net/9/12735/2012/ Understanding microbial community diversity metrics derived from metagenomes: Performance evaluation using simulated data sets Bonilla-Rosso, G., Eguiarte, L.E., Romero, D., Travisano, M., Souza, V., 2012. FEMS Microbiology Ecology 82, 37–49. http://dx.doi.org/10.1111/j.1574-6941.2012.01405.x Microbial control of diatom bloom dynamics in the open ocean Boyd, P.W., Strzepek, R., Chiswell, S., Chang, H., DeBruyn, J.M., Ellwood, M., Keenan, S., King, A.L., Maas, E.W., Nodder, S., Sander, S.G., Sutton, P., Twining, B.S., Wilhelm, S.W., Hutchins, D.A., 2012. Geophysical Research Letters 39, Citation No. L18601. http://dx.doi.org/10.1029/2012GL053448 Changes in the species composition of a thermotolerant community of acidophilic chemolithotrophic microorganisms upon switching to the oxidation of a new energy substrate Bulaev, A.G., Pivovarova, T.A., Melamud, V.S., Bumazhkin, B.K., Patutina, E.O., Kolganova, T.V., Kuznetsov, B.B., Kondrat’eva, T.F., 2012. Microbiology 81, 391–396. http://dx.doi.org/10.1134/S0026261712040029 Hypolithic microbial communities: Between a rock and a hard place Chan, Y., Lacap, D.C., Lau, M.C.Y., Ha, K.Y., Warren-Rhodes, K.A., Cockell, C.S., Cowan, D.A., McKay, C.P., Pointing, S.B., 2012. Environmental Microbiology 14, 2272–2282. http://dx.doi.org/10.1111/j.1462-2920.2012.02821.x Vertical distribution of microbial communities in a perennially stratified Arctic lake with saline, anoxic bottom waters Comeau, A.M., Harding, T., Galand, P.E., Vincent, W.F., Lovejoy, C., 2012. Scientific Reports 2. http://dx.doi.org/10.1038/srep00604 Ultramicrobacteria: Formation of the concept and contribution of ultramicrobacteria to biology Duda, V.I., Suzina, N.E., Polivtseva, V.N., Boronin, A.M., 2012. Microbiology 81, 379–390. http://dx.doi.org/10.1134/S0026261712040054 Growth study and hydrocarbonoclastic potential of microorganisms isolated from aviation fuel spill site in Ibeno, Nigeria Etuk, C.U., John, R.C., Ekong, U.E., Akpan, M.M., 2012. Bulletin of Environmental Contamination and Toxicology 89, 727–732. http://dx.doi.org/10.1007/s00128-012-0796-3

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The active bacterial community in a pristine confined aquifer Flynn, T.M., Sanford, R.A., Santo Domingo, J.W., Ashbolt, N.J., Levine, A.D., Bethke, C.M., 2012. Water Resources Research 48, Citation No. W09510. http://dx.doi.org/10.1029/2011WR011568 Structuring of bacterioplankton communities by specific dissolved organic carbon compounds Gómez-Consarnau, L., Lindh, M.V., Gasol, J.M., Pinhassi, J., 2012. Environmental Microbiology 14, 2361–2378. http://dx.doi.org/10.1111/j.1462-2920.2012.02804.x Diversity of active aerobic methanotrophs along depth profiles of arctic and subarctic lake water column and sediments He, R., Wooller, M.J., Pohlman, J.W., Quensen, J., Tiedje, J.M., Leigh, M.B., 2012. ISME Journal 6, 1937–1948. http://dx.doi.org/10.1038/ismej.2012.34 Subseafloor basalts as fungal habitats Ivarsson, M., 2012. Biogeosciences 9, 3625–3635. http://www.biogeosciences.net/9/3625/2012/ An untapped bacterial cellulolytic community enriched from coastal marine sediment under anaerobic and thermophilic conditions Ji, S., Wang, S., Tan, Y., Chen, X., Schwarz, W., Li, F., 2012. FEMS Microbiology Letters 335, 39–46. http://dx.doi.org/10.1111/j.1574-6968.2012.02636.x Shrinking majority of the deep biosphere Jørgensen, B.B., 2012. Proceedings of the National Academy of Sciences 109, 15976–15977. http://www.pnas.org/content/109/40/15976.short Global distribution of microbial abundance and biomass in subseafloor sediment Kallmeyer, J., Pockalny, R., Adhikari, R.R., Smith, D.C., D’Hondt, S., 2012. Proceedings of the National Academy of Sciences 109, 16213–16216. http://www.pnas.org/content/109/40/16213.abstract Prokaryotic abundance and community composition in a freshwater iron-rich microbial mat at circumneutral pH Kato, S., Kikuchi, S., Kashiwabara, T., Takahashi, Y., Suzuki, K., Itoh, T., Ohkuma, M., Yamagishi, A., 2012. Geomicrobiology Journal 29, 896–905. http://dx.doi.org/10.1080/01490451.2011.635763 Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments Kubo, K., Lloyd, K.G., Biddle, J. F., Amann, R., Teske, A., Knittel, K., 2012. ISME Journal 6, 1949–1965. http://dx.doi.org/10.1038/ismej.2012.37 Dissolved organic carbon influences microbial community composition and diversity in managed aquifer recharge systems Li, D., Sharp, J.O., Saikaly, P.E., Ali, S., Alidina, M., Alarawi, M.S., Keller, S., Hoppe-Jones, C., Drewes, J.E., 2012. Applied and Environmental Microbiology 78, 6819–6828. http://aem.asm.org/content/78/19/6819.abstract Microbial community structure and activity linked to contrasting biogeochemical gradients in bog and fen environments of the Glacial Lake Agassiz Peatland Lin, X., Green, S., Tfaily, M.M., Prakash, O., Konstantinidis, K.T., Corbett, J.E., Chanton, J.P., Cooper, W.T., Kostka, J.E., 2012. Applied and Environmental Microbiology 78, 7023–7031. http://aem.asm.org/content/78/19/7023.abstract Analysis and characterization of cultivable extremophilic hydrolytic bacterial community in heavy-metal-contaminated soils from the Atacama Desert and their biotechnological potentials Moreno, M.L., Piubeli, F., Bonfá, M.R.L., García, M.T., Durrant, L.R., Mellado, E., 2012. Journal of Applied Microbiology 113, 550–559. http://dx.doi.org/10.1111/j.1365-2672.2012.05366.x Structure and function of assemblages of Bacteria and Archaea in model anaerobic aquifer columns: Can functional instability be practically beneficial? Nelson, D.K., LaPara, T.M., Novak, P.J., 2012. Environmental Science & Technology 46, 10137–10144. http://dx.doi.org/10.1021/es300652z Modifications of bacterial populations in anthracene contaminated soil Núñez, E.V., Valenzuela-Encinas, C., Alcántara-Hernández, R.J., Navarro-Noya, Y.E., Luna-Guido, M., Marsch, R., Dendooven, L., 2012. Applied Soil Ecology 61, 113–126. http://www.sciencedirect.com/science/article/pii/S0929139312001126 Methanogenic and sulphate-reducing microbial communities in deep groundwater of crystalline rock fractures in Olkiluoto, Finland Nyyssönen, M., Bomberg, M., Kapanen, A., Nousiainen, A., Pitkdnen, P., Itdvaara, M., 2012. Geomicrobiology Journal 29, 863–878. http://dx.doi.org/10.1080/01490451.2011.635759

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Standardisation of methods in soil microbiology: Progress and challenges Philippot, L., Ritz, K., Pandard, P., Hallin, S., Martin-Laurent, F., 2012. FEMS Microbiology Ecology 82, 1–10. http://dx.doi.org/10.1111/j.1574-6941.2012.01436.x Temporal variability in the diversity and composition of stream bacterioplankton communities Portillo, M.C., Anderson, S.P., Fierer, N., 2012. Environmental Microbiology 14, 2417–2428. http://dx.doi.org/10.1111/j.1462-2920.2012.02785.x Algal biogeography: Metagenomics shows distribution of a picoplanktonic pelagophyte Raven, John A., 2012. Current Biology 22, R682-R683. http://www.sciencedirect.com/science/article/pii/S0960982212008214 Water–sediment niche differentiation in ancient marine lineages of Exiguobacterium endemic to the Cuatro Cienegas Basin Rebollar, E.A., Avitia, M., Eguiarte, L.E., González-González, A., Mora, L., Bonilla-Rosso, G., Souza, V., 2012. Environmental Microbiology 14, 2323–2333. http://dx.doi.org/10.1111/j.1462-2920.2012.02784.x Culturing captures members of the soil rare biosphere Shade, A., Hogan, C.S., Klimowicz, A.K., Linske, M., McManus, P.S., Handelsman, J., 2012. Environmental Microbiology 14, 2247–2252. http://dx.doi.org/10.1111/j.1462-2920.2012.02817.x The ecology of viruses that infect eukaryotic algae Short, S.M., 2012. Environmental Microbiology 14, 2253–2271. http://dx.doi.org/10.1111/j.1462-2920.2012.02706.x Ferrovibrio denitrificans gen. nov., sp. nov., a novel neutrophilic facultative anaerobic Fe(II)-oxidizing bacterium Sorokina, A.Y., Chernousova, E.Y., Dubinina, G.A., 2012. FEMS Microbiology Letters 335, 19–25. http://dx.doi.org/10.1111/j.1574-6968.2012.02631.x Physiology and diversity of ammonia-oxidizing Archaea Stahl, D.A., de la Torre, J.R., 2012. Annual Review of Microbiology 66, 83–101. http://www.annualreviews.org/doi/abs/10.1146/annurev-micro-092611-150128 Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga Thompson, A.W., Foster, R.A., Krupke, A., Carter, B.J., Musat, N., Vaulot, D., Kuypers, M.M.M., Zehr, J.P., 2012. Science 337, 1546–1550. http://www.sciencemag.org/content/337/6101/1546.abstract Microbial oceanography of anoxic oxygen minimum zones Ulloa, O., Canfield, D.E., DeLong, E.F., Letelier, R.M., Stewart, F.J., 2012. Proceedings of the National Academy of Sciences 109, 15996–16003. http://www.pnas.org/content/109/40/15996.abstract Anaerobic ammonium-oxidizing bacteria: Unique microorganisms with exceptional properties van Niftrik, L., Jetten, M.S.M., 2012. Microbiology and Molecular Biology Reviews 76, 585–596. http://mmbr.asm.org/content/76/3/585.abstract Global distribution of a wild alga revealed by targeted metagenomics Worden, A.Z., Janouskovec, J., McRose, D., Engman, A., Welsh, R.M., Malfatti, S., Tringe, S.G., Keeling, P.J., 2012. Current Biology 22, R675–R677. http://www.sciencedirect.com/science/article/pii/S0960982212008792 Molecular detection of novel anammox bacterial clusters in the sediments of the shallow freshwater Lake Taihu Wu, Y., Xiang, Y., Wang, J., Wu, Q.L., 2012. Geomicrobiology Journal 29, 852–859. http://dx.doi.org/10.1080/01490451.2011.635760 Paleoclimatology/Palaeoceanography Abrupt change in atmospheric CO2 during the last ice age Ahn, J., Brook, E.J., Schmittner, A., Kreutz, K., 2012. Geophysical Research Letters 39, Citation No. L18711. http://dx.doi.org/10.1029/2012GL053018 Environmental controls on B/Ca in calcite tests of the tropical planktic foraminifer species Globigerinoides ruber and Globigerinoides sacculifer Allen, K.A., Hönisch, B., Eggins, S.M., Rosenthal, Y., 2012. Earth and Planetary Science Letters 351–352, 270–280. http://www.sciencedirect.com/science/article/pii/S0012821X12003639 A mid-Holocene thermal maximum at the end of the African Humid Period Berke, M.A., Johnson, T.C., Werne, J.P., Schouten, S., Sinninghe Damsté, J.S., 2012. Earth and Planetary Science Letters 351–352, 95–104. http://www.sciencedirect.com/science/article/pii/S0012821X12003676

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