Nomenclature for factors of the HLA system, update May 2012

Nomenclature for factors of the HLA system, update May 2012

Human Immunology 73 (2012) 977–979 Contents lists available at SciVerse ScienceDirect www.ashi-hla.org journal homepage: www.elsevier.com/locate/hu...

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Human Immunology 73 (2012) 977–979

Contents lists available at SciVerse ScienceDirect

www.ashi-hla.org

journal homepage: www.elsevier.com/locate/humimm

Nomenclature for factors of the HLA system, update May 2012 Compiled by Steven G.E. Marsh for the WHO Nomenclature Committee for Factors of the HLA System The following sequences have been submitted to the Nomenclature Committee since the April 2012 nomenclature update and, following agreed policy, have been assigned official allele designations [1]. Full details of all sequences will be published in a forthcoming report. Below are listed the newly assigned sequences (Table 1) and confirmations of previously reported sequences (Table 2). The accession number of each sequence is given and these can be used to retrieve the sequence files from the EMBL, GenBank or DDBJ data libraries. Although accession numbers have been assigned by the data-libraries and most sequences are already available, there is still the possibility that an author may not yet have allowed the sequence to be released; in such a case you will have to contact the submitting author directly. Additional information pertaining to new sequences is often included in the publications describing these alleles; a listing of recent publications that describe new HLA sequences is given in Table 3. All new and confirmatory sequences should now be submitted directly to the WHO Nomenclature Committee for Factors of the HLA System via the IMGT/HLA Database using the sequence submission tool provided [2]. The IMGT/HLA Database may be accessed via the World Wide Web at: http://www.ebi.ac.uk/imgt/hla.

[2]

[3]

[4] [5] [6]

[7]

[8]

[9]

[10]

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References [1] Marsh SGE, Albert ED, Bodmer WF, Bontrop RE, Dupont B, Erlich HA, Fernandez-Vina M, Geraghty DE, Holdsworth R, Hurley CK, Lau M, Lee KW, Mach B, Maiers M, Mayr WR, Muller CR, Parham P, Petersdorf EW, Sasazuki T,

[12]

[13]

Strominger JL, Svejgaard A, Terasaki PI, Tiercy JM, Trowsdale J. Nomenclature for factors of the HLA system, 2010. Tissue Antigens 2010;75(4):291–455. Robinson J, Malik A, Parham P, Bodmer JG, Marsh SGE. IMGT/HLA database–a sequence database for the human major histocompatibility complex. Tissue Antigens 2000;55(3):280–7. Hong SS, Sung HY, Kang MS, Huh JY. HLA-A⁄02:328, a novel allele identified by sequence-based typing in cord blood from a Korean woman. Tissue Antigens 2012;79(4):308. Swelsen WT, Poell B, Hartog KS, Lardy NM. Characterization of a new allele: HLA-A⁄03:134. Tissue Antigens 2012;79(4):309–10. Sanchez-Gordo F, Balas A, Garcia-Sanchez F, Prat I, Vicario JL. Description of HLA-A⁄33:49 in a Spanish cord blood unit. Tissue Antigens 2012;80(1):65–6. Parkner AM, Halm-Heinrich I, Hahn J, Heim MU. Detection of a new HLA-B⁄15 allele, HLA-B⁄15:238, in a voluntary stem cell donor. Tissue Antigens 2012;80(1):66–7. Barbuti S, Fornaciari S, Mariotti ML, Curcio M, Scatena F. A novel HLAB⁄51:01:29 allele identified by sequence-based typing. Tissue Antigens 2012;79(4):310–1. Moraru M, Balas A, de Pablo R, Vicario JL, Vilches C. Allele-specific amplification of the complete HLA-C gene from genomic DNA - a novel Cw4 allele (C⁄04:71) with a Cw1 motif in the peptide-binding site. Tissue Antigens 2012;79(4):291–4. Testi M, Battarra M, Troiano M, Condello R, Andreani M. Characterization of the novel HLA-C⁄07:195 allele in an Italian hematopoietic stem cell volunteer donor, detected by sequence-based typing. Tissue Antigens 2012;80(1):67–8. Castelli EC, de Albuquerque RS, Veiga-Castelli LC, Felicio LP, Beachemin K, Faucher MC, Moreau P, Donadi EA, Roger M. Identification of two new HLA-G alleles, G⁄01:01:03:03 and G⁄01:01:21. Brazilian individuals. Tissue Antigens 2012;80(1):70–1. Zhang S, Wang J, Luo M, Li X, Chen Q. A novel allele: MICA⁄064N with a stop codon in exon 4. Tissue Antigens 2012;79(4):313–4. Zhu FM, Zhang W, He J, Lv HJ, Yan LX. A novel allele HLA-DRB1⁄11:119 was identified by polymerase chain reaction sequence-based typing in a Chinese individual. Tissue Antigens 2012;80(1):68–70. Zhang W, Wang W, Zhu FM, Lv HJ, Yan LX. Characterization of a novel allele, HLA-DQB1⁄05:03:05. Tissue Antigens 2012;79(4):311–2.

⇑ Address for correspondence: Professor Steven G.E. Marsh, Anthony Nolan Research Institute, Royal Free Hospital, Pond Street, London NW3 2QG, United Kingdom. Tel.: +44 20 7284-8321; fax: +44 20 7284 8331. E-mail address: [email protected] URLs: http://www.hla.alleles.org, http://www.anthonynolan.org/hig, http://www.ebi.ac.uk/imgt/hla 0198-8859/$36.00 - see front matter Ó 2012 American Society for Histocompatibility and Immunogenetics. Published by Elsevier Inc. All rights reserved. http://dx.doi.org/10.1016/j.humimm.2012.07.007

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Steven G.E. Marsh / Human Immunology 73 (2012) 977–979

Table 1 New sequences. HLA allele ⁄

A 02:01:79 A⁄02:01:80 A⁄02:06:13 A⁄02:40:02 A⁄02:371 A⁄02:372 A⁄02:373N A⁄11:124 A⁄11:125 A⁄11:126 A⁄11:127N A⁄24:204 A⁄26:01:25 A⁄29:39 A⁄29:40 A⁄29:41 A⁄31:65 A⁄31:66 A⁄66:17 A⁄68:93 B⁄08:93 B⁄13:58 B⁄15:01:29 B⁄15:248 B⁄15:249 B⁄15:250 B⁄15:251 B⁄15:252 B⁄15:253 B⁄35:204 B⁄35:205 B⁄35:206 B⁄39:01:01:03 B⁄40:208 B⁄40:209 B⁄40:210 B⁄40:211 B⁄40:212 B⁄44:02:25 B⁄44:03:16 B⁄44:126:02 B⁄44:153 B⁄44:154 B⁄46:32 B⁄49:22 B⁄51:61:02 B⁄51:134 B⁄51:135 B⁄51:136 B⁄52:01:12 B⁄52:30 B⁄53:28 B⁄56:36 B⁄57:58 B⁄58:37 C⁄02:59 C⁄04:01:01:05 C⁄04:119 C⁄06:83 C⁄07:01:27 C⁄07:02:34 C⁄07:245 C⁄08:63 C⁄16:01:08 DRB1⁄04:114 DRB1⁄09:01:09 DRB1⁄09:19 DRB1⁄11:129 DRB1⁄12:03:03 DRB1⁄13:26:02 DRB1⁄14:126 DRB1⁄14:127 DRB1⁄15:76 DRB5⁄02:06

Cell identification

Accession number

Submitting author

SZ-45 FRFLY19674 F03225 FRFGR30553 BY00925 LUMC-A96 62110720177 LUMC-A92 F02087 F03380 0100270 FRFLY19795 Xi‘an 55641 10945719 CTM-9097572 93063426 5331000359 F00015 014550504 BY00904 LUMC-B90 HG00003667 HG00003720 HG00003707 HG00003708 HG00003717 HG00003725 HG00003727 HG00003732 HG00003693 HG00003696 An203050 P4066 F02591 F03178 F03461 F03500 Xi‘an 56230 FRFVA39310 DE-FFM 151572 CBRA59119953797 HG00003679 HG00003681 HG00003706 81115632 BB0903012 HG00003733 HG00003734 HG00003736, HG00003737 HG00003699 HG00003698 HG00003703 HG00003668, HG00003669 HG00003726 HG00003704 014566087 CG040101 014581132 LUMC-C89 FRFG235 112561993 CBRA59119953797 An209953 103357220 Xi’an 56224 Shanxi007 7311122958 11QB000316 CHA11-760 F01108 LAPA036289 F01116 88018DMR160944 LUMC-B5n88

JN990986 HE806305 JQ979301 HE806304 JQ896287 HE804039 HE806315 HE804038 JQ979298 JQ979302 JX013637 HE806306 JX045663 JQ963275 JQ963274 JX020761 JN209959 JQ979295 HE806307 JQ039996 HE804040 JQ007634 JQ237625 JN119412 JN123815 JN123830 JN123823 JQ237626 JN406418 JN124222 JQ031231 HE804053 HM543712 JQ979299 JQ979300 JQ979303 JQ979304 JX036024 HE806314 HE793198 HE806309 JQ048672 JQ007631 JQ007649 JX050173 JX014319 JN119409 JQ007641 JN119385, JN119386 JQ007653 JQ237622 JQ048671 JN123808, JN123812 JN418825 JN123828 HE806310 JQ341055 HE806311 HE804042 FR716504 HE806312 HE806308 HE801913 HE806313 JX045664 JN093308 JX040451 JN384011 JX028302 JQ979296 HE774681 JQ979297 JQ965806 HE793380

Hong-Yan Zou, Shenzhen, China Dominique Masson, La Tronche, France Keming Du, Shanghai, China Dominique Masson, La Tronche, France Carolyn K Hurley, Washington DC, USA Jacqy DH Anholts, Leiden, The Netherlands Dominique Masson, La Tronche, France Jacqy DH Anholts, Leiden, The Netherlands Keming Du, Shanghai, China Jianhao Yang, Shanghai, China Chun-Ying Lin, Taipei, Taiwan Dominique Masson, La Tronche, France Mengli Liu, Xi’an, China Antonio Balas, Madrid, Spain Antonio Balas, Madrid, Spain Daniel Fuerst, Ulm, Germany Chuanfu Zhu, Jinan, China Keming Du, Shanghai, China Dominique Masson, La Tronche, France Carolyn K Hurley, Washington DC, USA Jacqy DH Anholts, Leiden, The Netherlands Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Francesca Poli, Milano, Italy Lixing Yan, Hangzhou, China Keming Du, Shanghai, China Keming Du, Shanghai, China Keming Du, Shanghai, China Keming Du, Shanghai, China Mengli Liu, Xi’an, China Dominique Masson, La Tronche, France Christian Seidl, Frankfurt am Main, Germany Dominique Masson, La Tronche, France Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Daniel Fuerst, Ulm, Germany YaoJung Yeh, Taipei, Taiwan Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Histogenetics, Ossining, USA Dominique Masson, La Tronche, France David Sayer, Perth, Australia Dominique Masson, La Tronche, France Jacqy DH Anholts, Leiden, The Netherlands Sylvie Tourne, Strasbourg, France Dominique Masson, La Tronche, France Dominique Masson, La Tronche, France Francesca Poli, Milano, Italy Dominique Masson, La Tronche, France Jun Qi, Xian, China Jiangtao Zuo, Taiyuan, China Feng Liu, Yueyang, China Janette Kwok, Pokfulam Road, Hong Kong Ji Young Huh, Sungnam-si, South Korea Keming Du, Shanghai, China Steven GE Marsh, London, United Kingdom Keming Du, Shanghai, China Maria Elisa Moraes, Rio de Janeiro, Brazil Jacqy DH Anholts, Leiden, The Netherlands

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Steven G.E. Marsh / Human Immunology 73 (2012) 977–979 Table 1 (continued) HLA allele

Cell identification

Accession number

Submitting author

DQB1⁄02:07 DQB1⁄03:41 DQB1⁄03:42 DQB1⁄06:52

LUMC-DQB91 LUMC-DQB97 YC040208 LUMC-DQB94

HE798690 HE798691 JX041850 HE798689

Jacqy DH Anholts, Leiden, The Netherlands Jacqy DH Anholts, Leiden, The Netherlands Yenhui Chang, St. Petersburg, USA Jacqy DH Anholts, Leiden, The Netherlands

Table 2 Confirmatory sequences. HLA Allele

Cell identification

Accession number

Submitting author

A⁄02:44 A⁄02:338 A⁄24:137 A⁄80:01 B⁄40:97 B⁄40:178 B⁄51:119 C⁄04:108 DRB1⁄04:99

MDA0000008, MDA0000009, MDA0000010 DE-FFM 168427 349176 CUI-86 D159844 LUMC-B93 LIGH92127 LUMC-C95 Shanxi008

JX046906, JX046907, JX046908 HE794979 HE800182 JX009131 HE681414 HE804041 JN039330 HE804043 JN093306

Kai Cao, Houston, USA Christian Seidl, Frankfurt am Main, Germany Edward KL Yang, Hualien, Taiwan Jorge Martinez-Laso, Madrid, Spain Edward KL Yang, Hualien, Taiwan Jacqy DH Anholts, Leiden, The Netherlands Maria da Graca Bicalho, Curitiba, Brazil Jacqy DH Anholts, Leiden, The Netherlands Fei Wang, Taiyuan, China

Table 3 Recently published sequences. HLA Allele ⁄

A 02:328 A⁄03:134 A⁄33:49 B⁄15:238 B⁄51:01:29 C⁄04:71 C⁄07:195 G⁄01:01:03:03 G⁄01:01:21 MICA⁄064N DRB1⁄11:119 DQB1⁄05:03:05

References [3] [4] [5] [6] [7] [8] [9] [10] [10] [11] [12] [13]